Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | AT1G17690_circ_g.2 |
ID in PlantcircBase | ath_circ_003128 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 6083286-6086319 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | AT1G17690 |
Parent gene annotation |
Putative uncharacterized protein At1g17690 |
Parent gene strand | - |
Alternative splicing | AT1G17690_circ_g.1 AT1G17690_circ_g.3 AT1G17690_circ_g.4 AT1G17690_circ_g.5 AT1G17690_circ_g.6 AT1G17690_circ_g.7 AT1G17690_circ_g.8 AT1G17690_circ_g.9 AT1G17690_circ_g.10 AT1G17690_circ_g.11 AT1G17690_circ_g.12 AT1G17690_circ_g.13 AT1G17690_circ_g.14 AT1G17690_circ_g.15 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G17690.1:15 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.117580328 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
6085625-6083288(-) |
Potential amino acid sequence |
MLGIKHTRKSIRLYGDFYSSDIIVASPLKLHMAIGAAEENKERDVDYLSSIEVLVIDHADIISM QNWSFLATVVDYLNRLPTKQHGTNVMRIRPLYLDGHARFYRQSIILSSYLTPEMNSLFGRHCLN YKGKMKMACEYKGVLEKVLLPVRQIYERFDAASITQVDDARLEYFTKKIFPKIKDSVQGGVMIF IHSYFEFVRLRNFLNTQNTSFCLLGDYAKNADISRAREQFFVGSRKIMLYTERAYFYKRYKIRG IKNLILYSLPERKEFYPELNHIFKTRDLVKKNESKIAKHRETSEEEILSDDGFLDQGFTRPKVL ILLPLRSIAFRVVKRLIQLTPESQRVNVEHLDRFNDEFGCEEDTDDCDGEKTTSKNGNSIKQKS SKPSDWQALFGANNNDDEFMLGIKHTRKSIRLYGDFYSSDIIVASPLKLHMAIGAAEENKERDV DYLSSIEVLVIDHADIISMQNWSFLATVVDYLNRLPTKQHGTNVMRIRPLYLDGHARFYRQSII LSSYLTPEMNSLFGRHCLNYKGKMKMACEYKGVLEKVLLPVRQIYERFDAASITQVDDARLEYF TKKIFPKIKDSVQGGVMIFIHSYFEFVRLRNFLNTQNTSFCLLGDYAKNADISRAREQFFVGSR KIMLYTERAYFYKRYKIRGIKNLILYSLPERKEFYPELNHIFKTRDLVKKNESKIAKHRETSEE EILSDDGFLDQGFTRPKVLILLPLRSIAFRVVKRLIQLTPESQRVNVEHLDRFNDEFGCEEDTD DCDGEKTTSKNGNSIKQKSSKPSDWQALFGANNNDDEFMLGIKHTRKSIRLYGDFYSSDIIVAS PLKLHMAIGAAEENKERDVDYLSSIEVLVIDHADIISMQNWSFLATVVDYLNRLPTKQHGTNVM RIRPLYLDGHARFYRQSIILSSYLTPEMNSLFGRHCLNYKGKMKMACEYKGVLEKVLLPVRQIY ERFDAASITQVDDARLEYFTKKIFPKIKDSVQGGVMIFIHSYFEFVRLRNFLNTQNTSFCLLGD YAKNADISRAREQFFVGSRKIMLYTERAYFYKRYKIRGIKNLILYSLPERKEFYPELNHIFKTR DLVKKNESKIAKHRETSEEEILSDDGFLDQGFTRPKVLILLPLRSIAFRVVKRLIQLTPESQRV NVEHLDRFNDEFGCEEDTDDCDGEKTTSKNGNSIKQKSSKPSDWQALFGANNNDDEFMLGIKHT RKSIRLYGDFYSSDIIVASPLKLHMAIGAAEENKERDVDYLSSIEVLVIDHADIISMQNWSFLA TVVDYLNRLPTKQHGTNVMRIRPLYLDGHARFYRQSIILSSYLTPEMNSLFGRHCLNYKGKMKM ACEYKGVLEKVLLPVRQIYERFDAASITQVDDARLEYFTKKIFPKIKDSVQGGVMIFIHSYFEF VRLRNFLNTQNTSFCLLGDYAKNADISRAREQFFVGSRKIMLYTERAYFYKRYKIRGIKNLILY SLPERKEFYPE(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Chu et al., 2017 |