Detail information of AT1G17690_circ_g.2


General Information
CircRNA Name AT1G17690_circ_g.2
ID in PlantcircBase ath_circ_003128
Alias NA
Organism Arabidpsis thaliana
Position chr1: 6083286-6086319  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT1G17690
Parent gene annotation Putative uncharacterized protein At1g17690
Parent gene strand -
Alternative splicing AT1G17690_circ_g.1 AT1G17690_circ_g.3 AT1G17690_circ_g.4 AT1G17690_circ_g.5 AT1G17690_circ_g.6 AT1G17690_circ_g.7 AT1G17690_circ_g.8 AT1G17690_circ_g.9 AT1G17690_circ_g.10 AT1G17690_circ_g.11 AT1G17690_circ_g.12 AT1G17690_circ_g.13 AT1G17690_circ_g.14 AT1G17690_circ_g.15
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT1G17690.1:15
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATCATCAGAAAGAATTTCTTCTTCGGAGGTCTCTCGATGCTTGGCGATTTTACTTTCATTCTT
CTTCACTAGATCTCTAGTTTTAAAGATGTGATTCAActcagggtaaaactccttccgctccgga
agagaatataagattaagttctttataccacggatctgaaaccgagaaagcaacatcatcatac
atcagcca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCAGGGTAAAACTCCTTCCGCTCCGGAAGAGAATATAAGATTAAGTTCTTTATACCACGGATC
TGAAACCGAGAAAGCAACATCATCATACATCAGCCAAATTGGTCAGAACAGTACAGAACCTACT
AAAAGATCAAAGATGAATTTAAGAAGAAGAAAAAACCTTGTATCTCTTATAAAAGTATGCTCTC
TCAGTGTAAAGCATGATCTTTCGGCTCCCTACAAAAAACTGTTCTCTTGCTCGGGATATATCTG
CATTTTTTGCATAACTGAAAAACAGAAGTCAATTAACTATATCCGGTAAAGGAAATCCAGATAA
CACAGAGAAGCAGCAACTTCAAAACAGGAAGAAAATGATCTTACTCTCCAAGAAGACAGAAAGA
GGTATTCTGCGTATTCAAAAAGTTTCTAAGCCTGACGAACTCGAAGTAAGAATGGATAAAGATC
ATTACTCCTCCCTACAAGCATGATTGGAATACGAACAATCAAGCTCCCAAATTTACGTGATAAC
AATAAGGTCTTTGTTCTGCCCAACTTTGTTATTGTCCAGTATGTTATGGCAACTTAGAAGTATG
GTCAACAAAACAGTTTAGACTTTGAATGACTTCGAATGATGGGAGTACCTGAACAGAATCTTTA
ATCTTTGGGAAAATCTGTAATGAAAAGAAGAACGGAATCAGTAACTATTTTATTTAGCACCTAA
AAAGTGTAATATGTGCAATGACTTATGACCCTACTTTCAATGGTATACGAACAAAGATATGCAA
CAATGCAATTTATTCATGAAAATCTAATTACTGCAAAACCATAGCATCAAAAAAAAAAAAAAAA
TGACCTTTTTGGTAAAATATTCAAGACGTGCATCGTCCACTTGGGTTATGGAGGCTGCATCAAA
TCTTTCATAAATCTGCAACACAGACAGAGAGATAAGATGTCTAAAACTTTTCTTGTGTAAAAAA
GATAAGCTTTCATACCTGACGGACAGGGAGCAACACTTTCTCAAGAACACCCTTGTATTCACAC
GCCATCTTCATCTGCATAGATTCAACCAAAAGTGTTACGGTACAAATTTAACATCAAACTAGAT
ATGAAAGACAAGTTAACTTTAAATTTACAATCTTGGTATGGGGAACACGCATAATAGATCAATC
ATATAATCCCCTCAATACACTAGTAACAAAAAAGACGCCCGAAATCCATTTACTATAAATGGAT
AATGTGCTGCATTATGAATGCTCACCTTTCCCTTATAGTTCAAGCAGTGGCGACCGAATAGAGA
ATTCATCTCTGAAACGAAATATTATCTGGGTTAGTACAAGTTTGGAAACTCCACCATAAATAAG
GATTATGGAAATATAGGAAAAACGAAGATCAAAAGGAATTAAACCATAGGTGATAACAAATGGA
CAGATCAATACCCGGAGTTAAATAAGAACTTAGAATTATTGACTGGCGATAAAACCTTGCATGT
CCATCCAGATACCTAAACATAAGAACTTTTCTTAGAAATTCTGGCATAGATGGGCTGTTGGACA
GATAAACATATTAGAGAAAAGAACTTAAAAGTCAGAACTACGTACAACGGCCGAATTCGCATGA
CATTGGTTCCATGTTGTTTTGTTGGCAATCTATTTAAGTAGTCAACGACTGTAGCAAGGAACGA
CCAATTCTGAAACATTATAATAGAACATATAAGAAATGGAGTCATAAATCTATCTTTGAAAATT
CTATAAGCTCATCCCACAACCTACCTGCATAGATATTATGTCTGCATGATCGATAACCAAAACC
TATCCACATGTACATGAAAAACAATATTAGTAACTAAAATAAGAAGATGCAGAATACAACCTCA
AATATTTGAAAATACATGCAGTAATAAACCAGGTTTAAGAGATAAAGCAATAATAGACTAAAGT
AACTGAACATTATTGGCATCAACCATCAGCTATCTATTAAATATATCTTCTGCAAGCAATGATA
AAAGAAGTACCTCTATGGAAGAAAGATAATCAACATCCCGTTCCTTGTTTTCTTCTGCTGCACC
AATGGCCTAACAAGAGCGAAGTTGATTAGAGATCAAATCAAGAAGATTTGCATAACTAAATCAT
CTTATGAAAGGATAGACAAGGCTGCCTACCATATGTAACTTGAGAGGGGAAGCAACTATAATGT
CTGAGGAATAAAAATCACCATATAGCCTAATACTCTTCCTGAAATTGACAAGAGGATTCAAGTC
TCAGCACAACGACCAAATTAGATACCAACCGAAAGCATGCACTTCAAATCTAAAGAGTATGTAG
GCTTATATATACCTTGTATGTTTAATGCCTAACATAAACTCATCATCGTTGTTATTCGCACCAA
AAAGGGCTTGCCAGTCAGAAGGTTTTGAAGACTTTTGTTTGATTGAGTTTCCATTTTTCGATGT
AGTCTTTTCACCATCACAGTCATCAGTATCCTCTTCACATCCAAACTCATCATTAAACCGGTCA
AGGTGTTCTACATTAACCTGAAACCAATGAAGGATATTGAAGATGGCATAGGCAACTCAAGGCA
TTAGCAACATAGACAATATCAATGCAGAAAATTCTTTCAACATCACTAACAATCAAACTAGAGA
ATTTTCTCATCCACGAGATGTAGAGTAGAGGCAACACAGTCACAAAGCATTTTCCAATTGAAAA
ATTGATGAACGAATTTCATAAATTTATATACCCTTTGAGATTCCGGAGTTAGTTGTATGAGCCT
CTTAACAACGCGAAAGGCAATGCTCCTCAATGGTAATAGAATCAGGACCTGGAATTACAATACA
CGTAAGACCGACTGTCAAACTCAAATGCGAGCAACAACATATTTAAACACATAAAATATTTGCA
GAAGAAAAGCAGAAGGGGTCACCTTTGGACGAGTAAATCCTTGGTCCAGAAATCCATCATCAGA
AAGAATTTCTTCTTCGGAGGTCTCTCGATGCTTGGCGATTTTACTTTCATTCTTCTTCACTAGA
TCTCTAGTTTTAAAGATGTGATTCAA
Conservation Information
Conserved circRNAs NA
PMCS 0.117580328
Functional Information
Coding potential Y
Potential coding position 6085625-6083288(-)
Potential amino acid sequence MLGIKHTRKSIRLYGDFYSSDIIVASPLKLHMAIGAAEENKERDVDYLSSIEVLVIDHADIISM
QNWSFLATVVDYLNRLPTKQHGTNVMRIRPLYLDGHARFYRQSIILSSYLTPEMNSLFGRHCLN
YKGKMKMACEYKGVLEKVLLPVRQIYERFDAASITQVDDARLEYFTKKIFPKIKDSVQGGVMIF
IHSYFEFVRLRNFLNTQNTSFCLLGDYAKNADISRAREQFFVGSRKIMLYTERAYFYKRYKIRG
IKNLILYSLPERKEFYPELNHIFKTRDLVKKNESKIAKHRETSEEEILSDDGFLDQGFTRPKVL
ILLPLRSIAFRVVKRLIQLTPESQRVNVEHLDRFNDEFGCEEDTDDCDGEKTTSKNGNSIKQKS
SKPSDWQALFGANNNDDEFMLGIKHTRKSIRLYGDFYSSDIIVASPLKLHMAIGAAEENKERDV
DYLSSIEVLVIDHADIISMQNWSFLATVVDYLNRLPTKQHGTNVMRIRPLYLDGHARFYRQSII
LSSYLTPEMNSLFGRHCLNYKGKMKMACEYKGVLEKVLLPVRQIYERFDAASITQVDDARLEYF
TKKIFPKIKDSVQGGVMIFIHSYFEFVRLRNFLNTQNTSFCLLGDYAKNADISRAREQFFVGSR
KIMLYTERAYFYKRYKIRGIKNLILYSLPERKEFYPELNHIFKTRDLVKKNESKIAKHRETSEE
EILSDDGFLDQGFTRPKVLILLPLRSIAFRVVKRLIQLTPESQRVNVEHLDRFNDEFGCEEDTD
DCDGEKTTSKNGNSIKQKSSKPSDWQALFGANNNDDEFMLGIKHTRKSIRLYGDFYSSDIIVAS
PLKLHMAIGAAEENKERDVDYLSSIEVLVIDHADIISMQNWSFLATVVDYLNRLPTKQHGTNVM
RIRPLYLDGHARFYRQSIILSSYLTPEMNSLFGRHCLNYKGKMKMACEYKGVLEKVLLPVRQIY
ERFDAASITQVDDARLEYFTKKIFPKIKDSVQGGVMIFIHSYFEFVRLRNFLNTQNTSFCLLGD
YAKNADISRAREQFFVGSRKIMLYTERAYFYKRYKIRGIKNLILYSLPERKEFYPELNHIFKTR
DLVKKNESKIAKHRETSEEEILSDDGFLDQGFTRPKVLILLPLRSIAFRVVKRLIQLTPESQRV
NVEHLDRFNDEFGCEEDTDDCDGEKTTSKNGNSIKQKSSKPSDWQALFGANNNDDEFMLGIKHT
RKSIRLYGDFYSSDIIVASPLKLHMAIGAAEENKERDVDYLSSIEVLVIDHADIISMQNWSFLA
TVVDYLNRLPTKQHGTNVMRIRPLYLDGHARFYRQSIILSSYLTPEMNSLFGRHCLNYKGKMKM
ACEYKGVLEKVLLPVRQIYERFDAASITQVDDARLEYFTKKIFPKIKDSVQGGVMIFIHSYFEF
VRLRNFLNTQNTSFCLLGDYAKNADISRAREQFFVGSRKIMLYTERAYFYKRYKIRGIKNLILY
SLPERKEFYPE(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017