Detail information of AT2G28620_circ_g.17


General Information
CircRNA Name AT2G28620_circ_g.17
ID in PlantcircBase ath_circ_015421
Alias NA
Organism Arabidpsis thaliana
Position chr2: 12268037-12269521  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT2G28620
Parent gene annotation P-loop containing nucleoside triphosphate hydrolases superfamily
protein
Parent gene strand -
Alternative splicing AT2G28620_circ_g.1 AT2G28620_circ_g.2 AT2G28620_circ_g.3 AT2G28620_circ_g.4 AT2G28620_circ_g.5 AT2G28620_circ_g.6 AT2G28620_circ_g.7 AT2G28620_circ_g.8 AT2G28620_circ_g.9 AT2G28620_circ_g.10 AT2G28620_circ_g.11 AT2G28620_circ_g.12 AT2G28620_circ_g.13 AT2G28620_circ_g.14 AT2G28620_circ_g.15 AT2G28620_circ_g.16 AT2G28620_circ_g.18 AT2G28620_circ_g.19 AT2G28620_circ_g.20
Support reads 1
Tissues aerial
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G28620.3:6
AT2G28620.1:6
AT2G28620.2:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGCAAAGATGGTGCAGTTATACCCATCAAGAACCTCAAAGACAATTGGAGAAACTGCTTGATG
ATACAGATCCTTTTGCTGGGATGTTGGGCCAAAAACctttttctcagcttcttcttgagtatac
ctctcctttggaatataaattccatttttctccctagcagcatagacctctgatacagtcaaga
acagacag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTTTCTCAGCTTCTTCTTGAGTATACCTCTCCTTTGGAATATAAATTCCATTTTTCTCCCTA
GCAGCATAGACCTCTGATACAGTCAAGAACAGACAGTTAACCCAAGAGATTCACATATAAGTAT
TTAATAAGCAAAGGAGATCATCAATATGTAACAAATATATACCTTGCTTCAGACGTTCAATTTC
AGAATACAAATCTTTCATAATAGCTGATTTCATCATCTTCTGGTTAACCTGAATGCAGAAGGTG
TGTTAATACAACTAAACTGGCAGAAATAATAGAGCAGCATATGTTTGACAGACCTCTGGTTTAT
TTTTGATGTGTTTCGCACGGTGTGCATAATCAAGTGTGCTGAGTGTTTCTTCCAGGCAATGAAC
AGAGGGTGAAACTGTAGCAATTACACATGTTTTTGTTTTTCCTCCCAAAGAGTCTCTCAATAAT
CTTGTCAACTTGCTTTCTCTGAAATTTAAATGTGTATAATCACATGGTTAGAAACATTAGATCT
TGTCTCAAAACTTCCCGAGAGAGAGATATTGAAGGCAGAATCTTTCTGTTACCTATATGGAATG
TGACCAGAGTGTTCAACCAAAGCATTTATGACACGTCCAAGTGTGAGCAAACTTTTGTTGATCT
CACCAGCTTCCCTGGCTCTACCCTGCAAAATAGTGACTCTTATATTGTTTAGTAAATCATCAAG
GTAAGACACTATTATTCTGTCAATAAAAAATCATGGTTCCTGACTGTTTTAGGTACCTCTCGAG
CACCAGACCGTGAAATATTCTCTGAACCAGCAAGATCAACTAGATTCAGCTTTCCACTTTTGAC
AATCTCTTCCCCTTCTGGAGTACATTCCTTAATATGGATTGTAACCGAAAATATTGAATGAGAT
CTACTACTTTGTTTGTTGAGAAGAGTCTCTGCTGTGCGTCTCTTAGCTGAACCTTTCTCCAAGA
CTTTGTAAATTTCATCAGCAGTAGACACAATCTCTTCTTCCAATCCGCGGACAAAAACACCACC
TTTGCCATCTTCCATAAGAGCCAGAGGTTTCTTTGATTTATCATCAGCGAATTTTGTTTCTTCC
GGAGCTAAAAGGTCTGTCAGTTCTTCATTGTAGAGCTCAAGAAATGAAACTTTCAAACTGTATT
CAGCAGCACTTTGTGCTTCCAGTATATCAAATATCTGTTTAACTGCTCTAGGGATAACACCTGC
ATCACTCGGAATTTCACCATTCTGGCAACAAAAGAAATATGTTCCATCAAATGAGGATTCAGTT
ACCATCAGTAAAGAAACTTCAAATGATGTTCTTGGAATAGTTAGCGTACCTTTTTTCTTGCTCC
TCCTTCCATTGTGTATGTCTTACCAGTTCCTGTTTGCCCATATGCAAAGATGGTGCAGTTATAC
CCATCAAGAACCTCAAAGACAATTGGAGAAACTGCTTGATGATACAGATCCTTTTGCTGGGATG
TTGGGCCAAAAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.28173403
Functional Information
Coding potential Y
Potential coding position 12269390-12268039(-)
Potential amino acid sequence MEGGARKKNGEIPSDAGVIPRAVKQIFDILEAQSAAEYSLKVSFLELYNEELTDLLAPEETKFA
DDKSKKPLALMEDGKGGVFVRGLEEEIVSTADEIYKVLEKGSAKRRTAETLLNKQSSRSHSIFS
VTIHIKECTPEGEEIVKSGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVE
HSGHIPYRESKLTRLLRDSLGGKTKTCVIATVSPSVHCLEETLSTLDYAHRAKHIKNKPEVNQK
MMKSAIMKDLYSEIERLKQEVYAAREKNGIYIPKERYTQEEAEKKVFGPTSQQKDLYHQAVSPI
VFEVLDGYNCTIFAYGQTGTGKTYTMEGGARKKNGEIPSDAGVIPRAVKQIFDILEAQSAAEYS
LKVSFLELYNEELTDLLAPEETKFADDKSKKPLALMEDGKGGVFVRGLEEEIVSTADEIYKVLE
KGSAKRRTAETLLNKQSSRSHSIFSVTIHIKECTPEGEEIVKSGKLNLVDLAGSENISRSGARE
GRAREAGEINKSLLTLGRVINALVEHSGHIPYRESKLTRLLRDSLGGKTKTCVIATVSPSVHCL
EETLSTLDYAHRAKHIKNKPEVNQKMMKSAIMKDLYSEIERLKQEVYAAREKNGIYIPKERYTQ
EEAEKKVFGPTSQQKDLYHQAVSPIVFEVLDGYNCTIFAYGQTGTGKTYTMEGGARKKNGEIPS
DAGVIPRAVKQIFDILEAQSAAEYSLKVSFLELYNEELTDLLAPEETKFADDKSKKPLALMEDG
KGGVFVRGLEEEIVSTADEIYKVLEKGSAKRRTAETLLNKQSSRSHSIFSVTIHIKECTPEGEE
IVKSGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHSGHIPYRESKLTR
LLRDSLGGKTKTCVIATVSPSVHCLEETLSTLDYAHRAKHIKNKPEVNQKMMKSAIMKDLYSEI
ERLKQEVYAAREKNGIYIPKERYTQEEAEKKVFGPTSQQKDLYHQAVSPIVFEVLDGYNCTIFA
YGQTGTGKTYTMEGGARKKNGEIPSDAGVIPRAVKQIFDILEAQSAAEYSLKVSFLELYNEELT
DLLAPEETKFADDKSKKPLALMEDGKGGVFVRGLEEEIVSTADEIYKVLEKGSAKRRTAETLLN
KQSSRSHSIFSVTIHIKECTPEGEEIVKSGKLNLVDLAGSENISRSGAREGRAREAGEINKSLL
TLGRVINALVEHSGHIPYRESKLTRLLRDSLGGKTKTCVIATVSPSVHCLEETLSTLDYAHRAK
HIKNKPEVNQKMMKSAIMKDLYSEIERLKQEVYAAREKNGIYIPKERYTQEEAEKK(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017