Detail information of BGIOSGA033912_circ_g.1


General Information
CircRNA Name BGIOSGA033912_circ_g.1
ID in PlantcircBase osi_circ_003161
Alias 11:15322432|15325850
Organism Oryza sativa ssp. indica
Position chr11: 15322432-15325850  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ie-circRNA
Identification method find_circ
Parent gene BGIOSGA033912
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA033912_circ_g.2 BGIOSGA033912_circ_g.3 BGIOSGA033912_circ_g.4 BGIOSGA033912_circ_g.5
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered BGIOSGA033912-TA:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATCGGGAACTCCCAACTCAACTCCTAATAAACTAAAAACATGAGCAAATTTGCTTCAATTTAT
GATGCTAACTTCCTCCCACCTGAATCTCATCAAATGctcaaaacacccaaccattgtatccact
tcttgcatcatctcaaaataaactggaagatatcttcaaattcatcttcaaactgcataaaaca
aaaaatat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCAAAACACCCAACCATTGTATCCACTTCTTGCATCATCTCAAAATAAACTGGAAGATATCTT
CAAATTCATCTTCAAACTGCATAAAACAAAAAATATGTTTTAATAGATGATAAAATCCAAAAAT
CATGGTTCCACTAAATTGTAGTTGAGATCATCGAAAACAAGGAAATATGAGAACATACCTCCCA
ATTCCATGTACAAATCTTGCCCTTGTGCGCCTGCTGCAATTTAATACATTTTCTGAAGAAAAAT
ATCATTTGTCACAGGACAAAATAAAAAGTCAAAAACTCTTGTACCCATGAAATACATATAATAG
AGGAAAACACAGCAAGTAGAATCTGCATGAGTATCTGAGCAAGCATGGTACATACCCAATCTCT
CGGATATCCTGTAGCCATTGTCTCATCTCAATTTCTTGGAAACCTTCCTCCTCATCGATCCCAA
GTCTTTTAGCTTTTGCAAACTTTTTTGATAGATCATAAGTAATATCTCGATTCCAGAGGGCATG
TACACATTGAAGGAACTGAAAGACAATAATTTCAAGTCAACAGATATACAAATAATTCACAAGA
TTCAAAAGTAACTAGAAATAAAGCAAGAATTCAACATCATTATGTATATAATCTTATGATAATG
TGAACTTTTATGTGGAGATATACCCTTAGGAGCAATGGAAGGATCAACCCTAAGAGACTACCTG
AGTATTTATCAGGCATTTGGATTGCATGAGACTCTTCTGCTCTCCTTTTGAGCTGCCCTTCCCA
TGTCTTCGCCACATCATGAACATTCTTCACAAACTGTCTATTAGAAAATAGACGTGTGAGGCAC
CATGCATAATGTGTGTATTTGCTTTCCCACTCTGGCTGGGTTCAAATTTTGCTAAGAGGACTGA
GTATACAAGAACTTCCTTGTATCGCTGAATCCTAAAAGAGAAAAGAATATGATGCAAGTAATTA
TTTCTACTACATGAAGCCTACTACGGTTGCACATAGTAGCTCCACCCAATTAATGTTAGATAAT
AACAAATTACATGATGACACATCTAGACCAGGATGACGCAGTAAGGAATGCTTCAGATATAATA
TTATGCTCAGCAAGGAGTAGACAGCCCAAGTGGTGGAAAGAGTTTGCTCGTCTAGCTCCATCAT
TACCCTGAAACATAATAGAACAATAGAATACATATACAACATAGTAGTGTGCATCTTTAAAAGC
ATGTGCATCTAATACCTAGTGAAAATGATTGCTACTCTAGAAAGAGTTGAAGGGTAAACACTTT
CATTAACATGTAGTATCATCGCCCATTAGAGTGAAAACTTATGTGCTACATGATGGGATTAGTG
CCATACGGAGAGTGCTGCAAGCCTCCAACAATAGCACTTCTGGGTTAACAACTTTTTTCACATG
AAGAAAGGACAAAAGAGAAAGTCGAGTACTCGAGTGCTATCCGCATGTGAACCTGACCCCATGG
AAGAGACAGGGAACAATACAGAGGCTGGGGTGTTACAATAAATGAAATACCTAATTACCATGGA
AAATCAAAACGAAACTTAGCAAATTGTGACACTTCTTATGGAAGGTATAGTTTTATATGGGAAA
TTCGAACTGTTAGAATCTGCTGTGTTCTTCATGAGCTGATTTAGAACACCAAACAGCAAATAAA
TATATTATTGGATTAGATGGCAACGCAGTTACTACCATTCTTGGGTCTGCGGCATCCAGCATGT
TATCTCTACTATCATTGTCATGCCCATCATTCCCCAATAACTATCATAATACTCATCAGTATCA
AACATGTCAATTGCCATGAACCTCCAGTAGATATAGAATGAAGATTTAGTTGCTAGATAGGGAT
AATATGAGATAAAAATATATATGCAAACCATGATAAATATTCCTACCAGGAGATCTAATTCACA
ATCAGGAGAACTCATTACGACTGCAGTGCTACGTTTGTTTTTGCTGCTGCTGCTGCTTCCACTG
CTCAGTCTCTTCTGCACACTAGTTTTCTGGAATATTGTACCAGAGCTATTGCTGTAGCGGCTGG
AACTACTACTACTTGTATCCTTTGGATTCGCAGAGATACTCAATGCACCCTGTAAAGCTGGCAC
ATAATGAAATGTGGTATGTGGACAGAATAGATAATCCTGCATGAGGAAAAACTCTCTGTTATCA
CATTAGAGGATTAAACAATAAAAAATTGAGAACTTCAATGCACTTCAAAGTATCTTGTGAATGT
TTAGTACTAATATTTAAATGACTCACTGCAAAATCATGATCTGCAACGGCAATAGCAACAGGTC
TTTTCCTGGAGAAACATGAACAGGCACAAGCTAGTGATAAAAAGGCAGAAGTGGAGACAAAATG
AACATATGTACTGTACCTCTGCAATATATGTTTGAAAAACTGCGATGCGTGTACACAGAAATCA
TTGCAAGAAAGTAGGCATCCACATCTGCAAAATAAAGCAAAACAATAGTTAGCATTGAATATTG
ACTATGTAACACCCTGTTTCAACTTTGTTGATAGCATACCCCTTAATTAGACCATGCATCCCCA
GATCAATAACATGAGCCCACCTTGCATATGCATTGGCTGCATCTAGGACAGCTTTTACTACAGA
TGCATGTTCCTCAGCTACTTCCACCTGACGCTTTTCTCACCCAAAGCAGCTCCAATGTGTTTCT
CAAGCAACTACAATTGGACAATTAACGGAGTGCAGTAAAAATCAAATCCATGTTTCCATAAAAC
AGTAAACCACCAAGACTACTGATGAATAGCCAAGAAAAAACTCACAGAGGAAATGAATGGCAAA
ATCTGCTGAAGGAACTCAGATAAGGAAAGCGGTTCGCCTTTATCACCGATTAAAACCAACGGTG
TCAATTTACCTGTTAGTTGAACTACTACCCATAAAAGAATTATGATTCTTACCTCCAGAATGTG
AAACATGAGCAATTCGATTATCAGAAATTGACTTCAGAATAAAGCAAACTAATTCGGTCTAACA
ATTCACACGACAAAACAAAATAATATTAGTCACACAAATGTCAGTACAAATAGGTCAAAGTGGT
GGTTAAAATAGACAAACTTACCTCAGTAGCACCCTTTGCTGATAGACACACAAGGCATGGGATT
AGGTCATGCAAGAGAGAAATTCCATGGCTCCAAACCACCTGCTACATTAAATTGTTATTGAGAA
ATAGTATGAATTTTCAACATAATACATAAGAAATGAATCGGTACCAACGCAAACAATAAAATAA
GATTAAATCATAACCTCTGCAACTAAATCAGCTGCTGCATTCTTCCAAACCAGATCATCGGGAA
CTCCCAACTCAACTCCTAATAAACTAAAAACATGAGCAAATTTGCTTCAATTTATGATGCTAAC
TTCCTCCCACCTGAATCTCATCAAATG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021