Detail information of BGIOSGA033912_circ_g.4


General Information
CircRNA Name BGIOSGA033912_circ_g.4
ID in PlantcircBase osi_circ_003162
Alias 11:15327777|15337125
Organism Oryza sativa ssp. indica
Position chr11: 15327777-15337125  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA033912
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA033912_circ_g.1 BGIOSGA033912_circ_g.2 BGIOSGA033912_circ_g.3 BGIOSGA033912_circ_g.5
Support reads NA
Tissues leaf
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered BGIOSGA033912-TA:21
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATCGAGGACTCCCAACTCAACTCCTAATAAACTAAAAACATCAGCAAATTTGCTCCAATTTAT
TATGCTGACTTCCTCCCACCTGAATCTCATCAAATGctgtagcaatctgacgccatgtccccgg
acctcatgagggaaatccttcctgataaaatgaagcgacgccctcaccaacgcatcgacatacc
cttcatcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021