Detail information of BGIOSGA016849_circ_g.1


General Information
CircRNA Name BGIOSGA016849_circ_g.1
ID in PlantcircBase osi_circ_014601
Alias Chr04:27615947_27619907(MH63RS2), Chr04:27628063_27632023(ZS97RS2), Chr04:27615947_27619907(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 25804635-25808596  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ie-circRNA
Identification method CIRI2, CIRI2, CIRI2
Parent gene BGIOSGA016849
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016849_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-TA
Number of exons covered BGIOSGA016849-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCGACTCCAAAGAATTAAGAAGCAAGAAGACAATTCAAGGTCAGAAAATCATGCTTACCTGTC
ATTGGCACCATATATGATATTTGTAGAAATTTTCATcatcatacagtgcacatatctctaactt
ttgcatcccaaaacatattctgttgatcacaactagtatgtccttcaatgaacatgatccctgt
accgccaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATCATACAGTGCACATATCTCTAACTTTTGCATCCCAAAACATATTCTGTTGATCACAACTAG
TATGTCCTTCAATGAACATGATCCCTGTACCGCCAAAATGAGGAGCAAAAAGAACAAATTTTAC
TACACTTCCAGCAACAAAAGAACCCAAGATTTATGAATGCTCAGAGGATAAGAATAATTTCTCT
GCTAACAAAACTTACCTTCACCCACGTTGACATCAATTTCCTGTACAACAGTTCAAAAAAAACA
AATGATTGATTTCCTAGATAGCAAGCACAGCAGAAGACAATTCAAAAAAGGAACACAAAACAAA
ATATAAGGAACAAATATTTCATTTACTGACCATTGCTGTCATCCCACAATCCAAGCAGCTCCAA
GGCCCTTGCTCCCAGAATCAACACATGCAAGAGCAACAAAAGCCAAAACAAAGTTGCTAAAAAG
TACACATATAACCCAGTCAATATCACACAGAGAACAATAGACCAAAAAAATGAAAATGTCATGT
GGACACATCTAAAAATTATAGATAAGAATATCTTGCACATCTGAAATTAGAGACAAAAATTCCT
CAACAGTTGCTATCTCAGATAACTTGTGAGATAACGGGCACCACACTAAACCTAAAAATTCCAT
GCTAAGCAATGGAAGTAAACTAGAGACAGTATGTCAAGCTTCTATCAAGGAAGAAGCCTCAGGT
CAATCTATATTCTACCAAGAGAAATAGAGATAACAGAAAAAAAAACAGTACAAAACTAGGCCTA
CATTACTAACTAGCAAAAAAAAAAATATATCAGGCACATATCTAAGAAAATAAAGATGCCTAGG
GTTCCCCAAACTACAAGTCTCTGATAAAACCAATATCAATAATTAACAATCTAACTACCAATAG
TCAGTTACAGTGCGAAATAATAAAAATTACAACTGTAACTAAGGTATATTTCCACTGTAAGTGG
TGTGAGTTGCACTGTAAGTGTGTTTTAGGACTGCATGAAACCTAAAATATTGACTTCATCTGTT
AAATCAAAGATTCAAAACTGAAAATACAATTTGAAAACTAAACTAAATCCCCAGATGAAAGAAG
TGGGCATCAAATACCATAACTAAATCAAAAAAGATACAAGGTTTAAGATCAGCCATTCAAATGC
CTCAAGAGATATATTTTTTGTGGGTAATTTCCTAATAGAAAACATATATTGAAGCTGACATCCA
CATAAATGCAACCAATAAAAAAACATGGAGCTATACATCCATAAATTTTTCTGCAAGAAAAAGT
TTGACGATCATAGAATTTACCTGGCTAGTTCTCCTTTTCTGTTTTAATGAAAGGAATAAGTAGA
CACATAAGAGTTATGTCCCGGGCAGCACTTGTTAAGCAAAAACAAAGCAGAATCTATGCAAGAC
AAAGAAAGAAAGTTAATGTTGGTTGCATACATTAACAGACAACATAAATGAAGCGGCCTCACAC
TTGCAATGGCACAAGAAGGCAAGCTAATTTCAGTAAAAACATCTAATTAATTCAAAAATGGATG
ATAACCCTACACTGCATTGACTGGAAAAAAAATCTACAACATAAGGGGAAGCAATACAAACTCA
CTATTGTTTTTATGAAACTAAAAGTACACATATTCTAACTTATGCATGCACAACTGACAAAAAA
GAGTCCCTAGGGTTCCCAAACTACAAGTGTCCTAGTTTTCACACAAATCAGTAATATACCCAAG
GTCAATCAATTACAAAATCTAACTACCAACAGTCAGTTACAGTGAGAGATAACAGAAATTACAA
CTGTAACTTAGGTATATTTCCACTGTAACTGGACTGTAAATGGTGACGAGTTGTACTGTAAGTA
TGTTTTAAGTTAGAATTACTGTAATTTCAGACTGCATGAAATCCAAAAATATTTAAGTTAGGTA
GTCAGATTACCTAGAACATATAAAACTAACATGCTTTTTAAATATTTCTATTACATGCACCAAC
CATACTTGATTTAAATTACATGCAGGGGCTGATAGAACAAAGTCTCAAGTAACAGGAAATACAA
CTGAAGAATTAAGAAGAAAGAAGACAGTTGAAGGTTAGAAAATCATGCTTACCTATTATTGTGC
ATCATATCTGATCTTCATAGAAAATTTCATCTAGCACAAATTTATGTATGTAAAAAATTAGTCA
TGAAGCATGACAAAAATTACAGTGATAATTAACCAAAAAATTAGAACTGTATATTCAGTTACAG
TGAGAAATAACAAAAATTACAACTGTAACTGCAGTGCATATGGACTGTAACTGGACTATGACTG
GAATCATGCATAACTTTGTCCAAAAATCCAATACTCATGCAACAACATCAACATTATTCCCTAC
TATAACATGATCTAAATCATATTATAAATTACCTAAATGATGGCCTATCTTCAACCAGAAAATC
ATGTCTACTATCAATGAAATTGAGAACTGAAATACTATTTCAAAACTTAACAAAATTACATAAG
ATTAGAACAGTCAGTTATAATTGCAAATGTAACTGAGGTATAGTTCCACTGTAACTTCACTGAG
TTGTACTGTAATTATGTTTTAAGTTAGAATTATTGTAATTACATTTTGTAATGCTTTTATTTAC
ATTTTGCAGGAACAATCTCAGCTGTAGAATCAACTAAGGACATCAAGTTGGACACCAAGAAAAA
AGAACCACTACAGATGAAAAGTACATAAACAACTATAAATAGATACTATATTGTTCCCAATTAA
CTCAAAATAGAAATCAAACTATTTTGACCTATTGAACAAATTATATTAATGAACCTTTCATACT
TACCAAACATAACACTGTAGTTTCTCATGAAAACTTCAATTTTCTCCAGTTGCAGGTCATGAAG
AAGTACAAGATGAAAAAAGAAGAAGCCAAGAATCAGATAAGAGCAATATTATGGCAAAACATAT
TAAAGAAACCAAAAGTCAGACCACTGAAGTTGTTCCAGGTCAGAATGGCATTGTTATTACTATA
TTCATGCAAATCTTTCAAGATACTATTGAAACATTGTAATTATAGTGGACTAGCATTCTAAACT
TTGTATACAACTAAAGTTGAACTATAACAGACCTAATTTTGACTACATCTGAGTGATAAAAACT
GCAAAGAATCTAATGACATAATTACAAAATTATGTCACTAAACTATATGCAGATTTTCCTATTC
AAACGAAATCAAAATTAAGTACTTATATAAACACAAAACATGCACAAACACATACTTGTATTGA
ATTTCTATTTCAGTACTAATGCAAGAACATCAGTATTAGTTCCTATTGTAGCTTCTATCAGAAA
TTCAGTACTCATGCAATAATATCAGCATTACTTCGTATTGTAACATGTTCTAAAAATATTAATA
TAACCTAACACATGCAGGGGCTGATAGAACAAAGGCTGAAGTAACAAGGAATTCACAATCAGAG
AGATGTGGAAGTGACAGAATTGACTCTGAAGAATTAAGAAGAAACAATACAGTTGAAGGTTAGA
AAAAACATGCTTACCTATTATTATGCACCATATCTGATCTTTGTTGAAAATTTCATCTAGTACA
AATTATATAAGGCAAAAATTAGAGGTGAAGCATGATAAATAAAAATAATCTAACTACCTTAATT
CAGTTACAGTTAGAAATAACAAAAGTTACAGCTGTAACTACAGTGCATATGGACTGTAACTGGA
ATCATGCTTAACTTTCTCCTAAAATTCAATAGCATCAGCATTATTCCATATTGTAACATGTTAT
AAAATGACCCAAAACATGCAGGATGTCATAGATTGCAGGCTCAAGTTACAGGGAATACACAATC
AAAGACATGTGTAAGTGACATAATCGACTCCAAAGAATTAAGAAGCAAGAAGACAATTCAAGGT
CAGAAAATCATGCTTACCTGTCATTGGCACCATATATGATATTTGTAGAAATTTTCAT
Conservation Information
Conserved circRNAs osa_circ_024703
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021