Detail information of BGIOSGA035740_circ_ig.2


General Information
CircRNA Name BGIOSGA035740_circ_ig.2
ID in PlantcircBase osi_circ_009224
Alias Chr11:32666533_32671016(MH63RS2), Chr11:31269871_31274352(ZS97RS2), Chr11:32666533_32671016(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr11: 22868700-22873183  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRI2, CIRI2, find_circ, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA035740_circ_ig.1 BGIOSGA035740_circ_ig.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCGGAGTAGGCACAAAGCTAAATTTATTATGCCAATTCGTCTGTCGGTCAAAAATTTGAGGAC
ACCTGACCGTTACTTTGTTGATCAATATCTATACAGgtactacgaggcaagaagcacagagata
gttgaggcaggggaacctttgggagtgtgctgatatgccactaattgcttaacacaccgagaag
cttctcgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTACTACGAGGCAAGAAGCACAGAGATAGTTGAGGCAGGGGAACCTTTGGGAGTGTGCTGATAT
GCCACTAATTGCTTAACACACCGAGAAGCTTCTCGGCATTTGCCAAATTTGGCTTCCCAAGACA
GGTGCTCGCGGCTAACTATCATCTATTGAAACACTTGAGTTATTTTTGTATTTCTCTACATGTT
TAATAATAGAGCCATTTGATTCCTACTGTTATCGATAACCTCCGCTACCTTTTCATATCCAACA
AACCATATAAATGTTTCTTCTTTACATCTTCTGTAAACGATGTGCTTACTTCATGATAGTTTAG
TTATTAGGCGTTCATTTGCTTTGACTATTCCCAGCTAAGTCTAACAAACGGGCTACTAGCATGA
AAAGATCAGGTCATCATGCAGCACTCCTTCATGATGTGCACTCTGTTCTGTTTATTTTGTTGCA
AGAATCTAACTTTAGAACCAACCATCTTTTCCATCAACAACAGCTGGCTATTACAATGTTATAT
GGGAATAATCTATCCCAAAGGCCCTGAGGTTTCTAGGATGCACAACACATTGTTTGAAGCTTGA
TTTGGTAATTCAAATTTGATAGTATAAGTAGTCTTATGTTTTATGTAAGATACATACACTAGGT
TATGTTTTCTTGTTAGGCCAAAGGGATAATGGTCATGTACCATGCAAATATATCTGCTCCCAAT
ATGTTCTGTTCTCTTTTCTAGAGGACTAGTCTGTTTTCTTTGTCTATTTCATCAATGGAAGCTC
ATCTTTTCTGTAGGTCATGGGCATCTATTTCCATAGGCATGGAAGTAAAAATGTTACTTATGAA
GACTTTTGTGCACACATGTGTGGTGCAGGTAGGCCTCTTAACCTCCTATTTCTTTTTGAAAGAC
AGTAACGAGTATCATGTCTTTATTTATTTGGCCTTTTTGTGAATCAACCATAGTATCATGTCTT
TATTTACTTGGCCTTCTTGTGAATCTACCAGTGCATGGGTTTTTTCCATGTATAGTTTTTCCGT
GTATATTTAGTTCTGCTGTCATGTTTAAATATCTCACTATCTAGGTTAAGATTTTGCCGGAAAG
TATGGCAGTAAACTAAATGTTAAAAGTCAGTCCAATATGTTTTGCCAAAGGTGTAAAGCAAGGC
CATGAACCAAACATACATATTATACTTGGCTTATGTACTATTATTACAGCAGAAATGCATCAAT
TTCTGTTAGCACACTGAAATTATGCGCCAAAATTTCTTTTTCTGTTAGTCCTATTTTCTCCTGA
TGTTACAGCTAAGGTCATTTCACAGCACCTTGTGACATCTTAATATGGAGTTAGTTAATATTTG
TAGTTGTGAATTATGTAGATATTAATACATACTATACCCCTTCAAGTCTCCTGTTAAGCTTTGC
CTAATCTGTCTTAAGTTCCCCCTTTCTCCGCTTTCACTGATCCGCTCTTACATCTTGATTAACA
TGTATTGCATTTAGCAATACCCTCTCAAACTAACATGTAAAAGGAGTATCACCTAACAACACCT
CATAGCATAAGCCCCTACCCATTTAAACCACATCGTGTTTTCTTTGCACCCATTCTTAATCGAT
AGTTCTTTCTTTTCCCCGAGGTGGTAAAAGAAGTGTGTTTGCACCCTTCTTAATCAGTAGCTCT
CTCTTTCCCTGAGGTGGTGAAATATACGCTCCTGCATTGGTGAACCTCAAATAGAGGTACTTCA
TGTAGAAGAATCAATGAGAAAGTATTTTCTCATTTGTAAGTATGTCATAGAAAACAGTTGGCTT
AATGATAAAAATACTTTCTGGTGCTTGTTGGCTTTGAAGAGAAACACTGAGAATCAACAAAGTA
TTTTTACTCGTTATAAAAACTGCCATACTGAAAGTATTTTCTCTGTCAGTATGGCAGTTCTCTT
AACGAGTGAAAACACACTTTCTGGTGCTTGTTGGCTTTCAAGAGAAACACCAGAAGCTAATAAT
ACGTTTAAGTACCCACATTGGAAGCATGATACTCTGTCATAGCATACCCGAACAGATATTTTCG
TTTTTTTCCATAGCATATCTTGCTGTATTTATAGAAAAGGTGGACCATTAAAATCACTACAACA
TACCATAAGTACCATGTTTAAACAATGAACTCAGCCACTTAAAAATCCAACATCGTTCTTCATG
ATTCTGTGCATTTTTCTTTGATGTTTTCAAACTGCCTTGAGAGGCTATGCACCTAATTTTTTTA
TCTAATACTTTTGTTAGGTTGAACTTTAGTCAGGAAAGGTCTTGGATTCCATCGCAGCTCATGA
GCATGTTGAAGTGGCTGTTATTCCACCTGCAGGTCAATCACCAAGGTAGGCTGTATACCGATAA
TGTTCATTCTCATGCCGGATGAACTAGTTCGTGAACAACACACTTCTCATGGTGGTTGAAGGAA
TGTATATGTGTTCAAAACACTTATCTTCAATTGAAACTTCTATTTACGTAATCGCAGCAGGGGA
AACCCCCGCTGTTAATTTTCACCAAAAAAAGAGCACATACAATAATTACAAATGGGAAAGAGAA
AATAAATTGAAACAAAGAAAGCCAGTCTAGGAACTGATCTTCAATTTAACTGAATTCTAAATCA
TGCTTTGGCTTACATATACGTTTAGTTGTGCAGCCTTACACTATCAATTGACTTGCATATTGGT
CCGCTTGCTCTGGTATCCTTTCTTTCTATATAGGTACAAACAACTAATTGCAGTAATTGCTATA
AAGCAACCCCAATGCTAAGACATGTTGCATCGCCAACAATATATCAGCTGTTAGATTGAACTAA
TCCTTAGATATCAGCCGTTACACAAATCAGTCTCATGTATAGACTGGCCCAGCTGGACTCTCCT
GTTCCACTTTTGCCATGTCAGCCCATCCCCCATGCCTTCACTCGGCACCTGGAAGGGATGACTC
CCACACGTGTGTCAGGAGGCGCTCCTTGCCTGTCCTGTCTGTAATTGCGTTAGAAATTGCCATT
ATTCATGATTGATCCCATTTATTCTCTTGAAAAGCCTTTTTTGAAATTCTTATTTAATCACTTA
ATCAACTTCCATCCCATGGGCATCCAAGCAGAACCTCTGTCTGCACCTGCCTCTCACAGCACGC
TCCTTTTCCTGCTCTTGAACAGCTTTCATTTGTTCATTTTAGGTTTTTTTTTTCAACTATTCTT
TCATCTGACACATTTAATATTGTTGATCTTTGTTTGTATGAAGGTCCCTGCAGTTTTTGGTGGT
ATTGTTTTGCATAATCTGGTCACTAGATGCCTACCAACTGCTTGAGATAGTGCCTGGCAAGAAA
ATCACTGTTCTTTGGCTAAATCTTTACATGGCATCTCTGTTCTGCCATTCTCACCGACATCCAG
TTTTCTTGGAGCTTGGCATCCCCTCCTTGTGCAACTCGTTGCAAGAACAAGTCTCTGCTGGTGT
TCTCTGCAGTTCATCTATATTCTTTTGTTGATGCTCTCTACTTACATAATGCGCTTCTCTATCT
GTGTAAGTGATCGTTCCAACTATACTTGCATCATTCTGTTTTATCTAATCTCTCCTTTTCTTTA
CCCTGTGCACTTAATAGTGTTGTGCTGTTTGTGAAATCCAAGAAACAGAGCTCAAATAAATTCG
CTAGTGTATGTTGCTGTTGGATTGTTCTGCAGCTTTTGCTTCCATTGCTATTAATTTGGGCTAA
GCACTTGGCCTTCCCATTGTCCAGTGATAGATCTACACATGGTAGTGATATATATAACAAGATG
GCTTCAAGAGAGTTGATTGAGTTAAATGAACCCTCTTGCAGCCATATTATTGTTCTTTTTCCTG
TTGTGTCTTTTCACTTAGCCCATTGAATTGTTGTGATGGACAGTGGCTGGGGCTTATTTAATGT
GCCATACGAAAGTAATTATTCCATGTCAAACTGATGATTTGTGTGTTGAAAGACATAAACAAGC
TGGTTTACAGATTTGAATTGTTCTGTAAACTATTCAAATACGCTACCATGTTCTGGATCCTGCT
ACTCTTGGCAATATTAGGATGGATTTCATCATATCCTGTAAATTTGATGTGCTTATTTGCTTAG
GGCTATATAGGAAAACCAATGAGACACCTTTTTGTTAAGATAGAAAACAATATATGCAACTACA
TGTCTTAAAGTTCTTCGTAGTAGGTAAACCTTCATACTTTTTCACTTCTGAGCTGCCTTTCAAA
CAAGAGGATGATTGTATACCCGAGAAGGGGGAAAAGAGTATCTGCATGGCAGACGGTAAGGGAA
ATTCTTATTTCTACACATGAAAATGATACTCAATGTTTTGATAAGCTCTGTAAATAAGATTGTC
AAAGTCTGTCTGTTTCACAATTTTTCAGCTTAATCGGAGTAGGCACAAAGCTAAATTTATTATG
CCAATTCGTCTGTCGGTCAAAAATTTGAGGACACCTGACCGTTACTTTGTTGATCAATATCTAT
ACAG
Conservation Information
Conserved circRNAs osa_circ_010195
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021