Detail information of BGIOSGA035740_circ_ig.3


General Information
CircRNA Name BGIOSGA035740_circ_ig.3
ID in PlantcircBase osi_circ_003231
Alias 11:22868701|22873183
Organism Oryza sativa ssp. indica
Position chr11: 22868701-22873183  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA035740_circ_ig.1 BGIOSGA035740_circ_ig.2
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCGGAGTAGGCACAAAGCTAAATTTATTATGCCAATTCGTCTGTCGGTCAAAAATTTGAGGAC
ACCTGACCGTTACTTTGTTGATCAATATCTATACAGtactacgaggcaagaagcacagagatag
ttgaggcaggggaacctttgggagtgtgctgatatgccactaattgcttaacacaccgagaagc
ttctcggc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TACTACGAGGCAAGAAGCACAGAGATAGTTGAGGCAGGGGAACCTTTGGGAGTGTGCTGATATG
CCACTAATTGCTTAACACACCGAGAAGCTTCTCGGCATTTGCCAAATTTGGCTTCCCAAGACAG
GTGCTCGCGGCTAACTATCATCTATTGAAACACTTGAGTTATTTTTGTATTTCTCTACATGTTT
AATAATAGAGCCATTTGATTCCTACTGTTATCGATAACCTCCGCTACCTTTTCATATCCAACAA
ACCATATAAATGTTTCTTCTTTACATCTTCTGTAAACGATGTGCTTACTTCATGATAGTTTAGT
TATTAGGCGTTCATTTGCTTTGACTATTCCCAGCTAAGTCTAACAAACGGGCTACTAGCATGAA
AAGATCAGGTCATCATGCAGCACTCCTTCATGATGTGCACTCTGTTCTGTTTATTTTGTTGCAA
GAATCTAACTTTAGAACCAACCATCTTTTCCATCAACAACAGCTGGCTATTACAATGTTATATG
GGAATAATCTATCCCAAAGGCCCTGAGGTTTCTAGGATGCACAACACATTGTTTGAAGCTTGAT
TTGGTAATTCAAATTTGATAGTATAAGTAGTCTTATGTTTTATGTAAGATACATACACTAGGTT
ATGTTTTCTTGTTAGGCCAAAGGGATAATGGTCATGTACCATGCAAATATATCTGCTCCCAATA
TGTTCTGTTCTCTTTTCTAGAGGACTAGTCTGTTTTCTTTGTCTATTTCATCAATGGAAGCTCA
TCTTTTCTGTAGGTCATGGGCATCTATTTCCATAGGCATGGAAGTAAAAATGTTACTTATGAAG
ACTTTTGTGCACACATGTGTGGTGCAGGTAGGCCTCTTAACCTCCTATTTCTTTTTGAAAGACA
GTAACGAGTATCATGTCTTTATTTATTTGGCCTTTTTGTGAATCAACCATAGTATCATGTCTTT
ATTTACTTGGCCTTCTTGTGAATCTACCAGTGCATGGGTTTTTTCCATGTATAGTTTTTCCGTG
TATATTTAGTTCTGCTGTCATGTTTAAATATCTCACTATCTAGGTTAAGATTTTGCCGGAAAGT
ATGGCAGTAAACTAAATGTTAAAAGTCAGTCCAATATGTTTTGCCAAAGGTGTAAAGCAAGGCC
ATGAACCAAACATACATATTATACTTGGCTTATGTACTATTATTACAGCAGAAATGCATCAATT
TCTGTTAGCACACTGAAATTATGCGCCAAAATTTCTTTTTCTGTTAGTCCTATTTTCTCCTGAT
GTTACAGCTAAGGTCATTTCACAGCACCTTGTGACATCTTAATATGGAGTTAGTTAATATTTGT
AGTTGTGAATTATGTAGATATTAATACATACTATACCCCTTCAAGTCTCCTGTTAAGCTTTGCC
TAATCTGTCTTAAGTTCCCCCTTTCTCCGCTTTCACTGATCCGCTCTTACATCTTGATTAACAT
GTATTGCATTTAGCAATACCCTCTCAAACTAACATGTAAAAGGAGTATCACCTAACAACACCTC
ATAGCATAAGCCCCTACCCATTTAAACCACATCGTGTTTTCTTTGCACCCATTCTTAATCGATA
GTTCTTTCTTTTCCCCGAGGTGGTAAAAGAAGTGTGTTTGCACCCTTCTTAATCAGTAGCTCTC
TCTTTCCCTGAGGTGGTGAAATATACGCTCCTGCATTGGTGAACCTCAAATAGAGGTACTTCAT
GTAGAAGAATCAATGAGAAAGTATTTTCTCATTTGTAAGTATGTCATAGAAAACAGTTGGCTTA
ATGATAAAAATACTTTCTGGTGCTTGTTGGCTTTGAAGAGAAACACTGAGAATCAACAAAGTAT
TTTTACTCGTTATAAAAACTGCCATACTGAAAGTATTTTCTCTGTCAGTATGGCAGTTCTCTTA
ACGAGTGAAAACACACTTTCTGGTGCTTGTTGGCTTTCAAGAGAAACACCAGAAGCTAATAATA
CGTTTAAGTACCCACATTGGAAGCATGATACTCTGTCATAGCATACCCGAACAGATATTTTCGT
TTTTTTCCATAGCATATCTTGCTGTATTTATAGAAAAGGTGGACCATTAAAATCACTACAACAT
ACCATAAGTACCATGTTTAAACAATGAACTCAGCCACTTAAAAATCCAACATCGTTCTTCATGA
TTCTGTGCATTTTTCTTTGATGTTTTCAAACTGCCTTGAGAGGCTATGCACCTAATTTTTTTAT
CTAATACTTTTGTTAGGTTGAACTTTAGTCAGGAAAGGTCTTGGATTCCATCGCAGCTCATGAG
CATGTTGAAGTGGCTGTTATTCCACCTGCAGGTCAATCACCAAGGTAGGCTGTATACCGATAAT
GTTCATTCTCATGCCGGATGAACTAGTTCGTGAACAACACACTTCTCATGGTGGTTGAAGGAAT
GTATATGTGTTCAAAACACTTATCTTCAATTGAAACTTCTATTTACGTAATCGCAGCAGGGGAA
ACCCCCGCTGTTAATTTTCACCAAAAAAAGAGCACATACAATAATTACAAATGGGAAAGAGAAA
ATAAATTGAAACAAAGAAAGCCAGTCTAGGAACTGATCTTCAATTTAACTGAATTCTAAATCAT
GCTTTGGCTTACATATACGTTTAGTTGTGCAGCCTTACACTATCAATTGACTTGCATATTGGTC
CGCTTGCTCTGGTATCCTTTCTTTCTATATAGGTACAAACAACTAATTGCAGTAATTGCTATAA
AGCAACCCCAATGCTAAGACATGTTGCATCGCCAACAATATATCAGCTGTTAGATTGAACTAAT
CCTTAGATATCAGCCGTTACACAAATCAGTCTCATGTATAGACTGGCCCAGCTGGACTCTCCTG
TTCCACTTTTGCCATGTCAGCCCATCCCCCATGCCTTCACTCGGCACCTGGAAGGGATGACTCC
CACACGTGTGTCAGGAGGCGCTCCTTGCCTGTCCTGTCTGTAATTGCGTTAGAAATTGCCATTA
TTCATGATTGATCCCATTTATTCTCTTGAAAAGCCTTTTTTGAAATTCTTATTTAATCACTTAA
TCAACTTCCATCCCATGGGCATCCAAGCAGAACCTCTGTCTGCACCTGCCTCTCACAGCACGCT
CCTTTTCCTGCTCTTGAACAGCTTTCATTTGTTCATTTTAGGTTTTTTTTTTCAACTATTCTTT
CATCTGACACATTTAATATTGTTGATCTTTGTTTGTATGAAGGTCCCTGCAGTTTTTGGTGGTA
TTGTTTTGCATAATCTGGTCACTAGATGCCTACCAACTGCTTGAGATAGTGCCTGGCAAGAAAA
TCACTGTTCTTTGGCTAAATCTTTACATGGCATCTCTGTTCTGCCATTCTCACCGACATCCAGT
TTTCTTGGAGCTTGGCATCCCCTCCTTGTGCAACTCGTTGCAAGAACAAGTCTCTGCTGGTGTT
CTCTGCAGTTCATCTATATTCTTTTGTTGATGCTCTCTACTTACATAATGCGCTTCTCTATCTG
TGTAAGTGATCGTTCCAACTATACTTGCATCATTCTGTTTTATCTAATCTCTCCTTTTCTTTAC
CCTGTGCACTTAATAGTGTTGTGCTGTTTGTGAAATCCAAGAAACAGAGCTCAAATAAATTCGC
TAGTGTATGTTGCTGTTGGATTGTTCTGCAGCTTTTGCTTCCATTGCTATTAATTTGGGCTAAG
CACTTGGCCTTCCCATTGTCCAGTGATAGATCTACACATGGTAGTGATATATATAACAAGATGG
CTTCAAGAGAGTTGATTGAGTTAAATGAACCCTCTTGCAGCCATATTATTGTTCTTTTTCCTGT
TGTGTCTTTTCACTTAGCCCATTGAATTGTTGTGATGGACAGTGGCTGGGGCTTATTTAATGTG
CCATACGAAAGTAATTATTCCATGTCAAACTGATGATTTGTGTGTTGAAAGACATAAACAAGCT
GGTTTACAGATTTGAATTGTTCTGTAAACTATTCAAATACGCTACCATGTTCTGGATCCTGCTA
CTCTTGGCAATATTAGGATGGATTTCATCATATCCTGTAAATTTGATGTGCTTATTTGCTTAGG
GCTATATAGGAAAACCAATGAGACACCTTTTTGTTAAGATAGAAAACAATATATGCAACTACAT
GTCTTAAAGTTCTTCGTAGTAGGTAAACCTTCATACTTTTTCACTTCTGAGCTGCCTTTCAAAC
AAGAGGATGATTGTATACCCGAGAAGGGGGAAAAGAGTATCTGCATGGCAGACGGTAAGGGAAA
TTCTTATTTCTACACATGAAAATGATACTCAATGTTTTGATAAGCTCTGTAAATAAGATTGTCA
AAGTCTGTCTGTTTCACAATTTTTCAGCTTAATCGGAGTAGGCACAAAGCTAAATTTATTATGC
CAATTCGTCTGTCGGTCAAAAATTTGAGGACACCTGACCGTTACTTTGTTGATCAATATCTATA
CAG
Conservation Information
Conserved circRNAs osa_circ_010195*
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021