Plant Circular RNA Database

Detail information of Os06g0286351_circ_g.7

			
						 General Information
					
						CircRNA Name
						Os06g0286351_circ_g.7
					
						ID in PlantcircBase
						osa_circ_030570
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr6: 10350355-10350654  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, KNIFE, PcircRNA_finder, circRNA_finder, find_circ
					
						Parent gene
						
							Os06g0286351						
					
						Parent gene annotation
						
							Armadillo-type fold domain containing protein. (Os06t0286351-01)
;Similar to AF-4 domain containing protein-like protein. (Os06t0
286351-02);Similar to AF-4 domain containing protein-like protei
n. (Os06t0286351-03);Similar to AF-4 domain containing protein-l
ike protein. (Os06t0286351-04)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os06g0286351_circ_g.5 Os06g0286351_circ_g.6 						
					
						Support reads
						23
					
						Tissues
						root, seed
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os06t0286351-03:2
Os06t0286351-02:2
Os06t0286351-04:2
Os06t0286351-01:2

General Information
CircRNA Name	Os06g0286351_circ_g.7
ID in PlantcircBase	osa_circ_030570
Alias	NA
Organism	Oryza sativa
Position	chr6: 10350355-10350654 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, KNIFE, PcircRNA_finder, circRNA_finder, find_circ
Parent gene	Os06g0286351
Parent gene annotation	Armadillo-type fold domain containing protein. (Os06t0286351-01) ;Similar to AF-4 domain containing protein-like protein. (Os06t0 286351-02);Similar to AF-4 domain containing protein-like protei n. (Os06t0286351-03);Similar to AF-4 domain containing protein-l ike protein. (Os06t0286351-04)
Parent gene strand	-
Alternative splicing	Os06g0286351_circ_g.5 Os06g0286351_circ_g.6
Support reads	23
Tissues	root, seed
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os06t0286351-03:2 Os06t0286351-02:2 Os06t0286351-04:2 Os06t0286351-01:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							TTGTTTCAAAAATTGGCATTGCTATCTGAGCTATACACCCCAAGGATTGTAAGATGGATGGCAA
ATGCACTTTCTTTTCCTCCAACAAGTCCACAAGCCTcttcaataaacaactttgagtactatca
ctccattcagatttatgagcagaaacgtcgcccgaatcctggtgatgcactccgaattgcaata
aaaatgga

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							Transcript length: 219
Transcript exons: 10350355-10350420,10350502-10350654
CTTCAATAAACAACTTTGAGTACTATCACTCCATTCAGATTTATGAGCAGAAACGTCGCCCGAA
TCATCATTGCAGTCAAGAATTTTTTTAGTTATAAAATTTATTATCTCTTCTCCCCTTGTTTCAA
AAATTGGCATTGCTATCTGAGCTATACACCCCAAGGATTGTAAGATGGATGGCAAATGCACTTT
CTTTTCCTCCAACAAGTCCACAAGCCT
						
						Genomic sequence
						
							CTTCAATAAACAACTTTGAGTACTATCACTCCATTCAGATTTATGAGCAGAAACGTCGCCCGAA
TCCTGGTGATGCACTCCGAATTGCAATAAAAATGGAAATAAAATGGAGAAGGAAAGGAGAAATT
TAAAGAGCGTAAGTCTTACATCATTGCAGTCAAGAATTTTTTTAGTTATAAAATTTATTATCTC
TTCTCCCCTTGTTTCAAAAATTGGCATTGCTATCTGAGCTATACACCCCAAGGATTGTAAGATG
GATGGCAAATGCACTTTCTTTTCCTCCAACAAGTCCACAAGCCT

Sequences
Splice junction sequence	TTGTTTCAAAAATTGGCATTGCTATCTGAGCTATACACCCCAAGGATTGTAAGATGGATGGCAA ATGCACTTTCTTTTCCTCCAACAAGTCCACAAGCCTcttcaataaacaactttgagtactatca ctccattcagatttatgagcagaaacgtcgcccgaatcctggtgatgcactccgaattgcaata aaaatgga
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 219 Transcript exons: 10350355-10350420,10350502-10350654 CTTCAATAAACAACTTTGAGTACTATCACTCCATTCAGATTTATGAGCAGAAACGTCGCCCGAA TCATCATTGCAGTCAAGAATTTTTTTAGTTATAAAATTTATTATCTCTTCTCCCCTTGTTTCAA AAATTGGCATTGCTATCTGAGCTATACACCCCAAGGATTGTAAGATGGATGGCAAATGCACTTT CTTTTCCTCCAACAAGTCCACAAGCCT
Genomic sequence	CTTCAATAAACAACTTTGAGTACTATCACTCCATTCAGATTTATGAGCAGAAACGTCGCCCGAA TCCTGGTGATGCACTCCGAATTGCAATAAAAATGGAAATAAAATGGAGAAGGAAAGGAGAAATT TAAAGAGCGTAAGTCTTACATCATTGCAGTCAAGAATTTTTTTAGTTATAAAATTTATTATCTC TTCTCCCCTTGTTTCAAAAATTGGCATTGCTATCTGAGCTATACACCCCAAGGATTGTAAGATG GATGGCAAATGCACTTTCTTTTCCTCCAACAAGTCCACAAGCCT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.391902917

Conservation Information
Conserved circRNAs	NA
PMCS	0.391902917

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							10350609-10350370(+)
10350613-10350524(+)
10350575-10350357(-)
						
						Potential amino acid sequence
						
							MDGKCTFFSSNKSTSLFNKQL*(+)
MANALSFPPTSPQASSINNFEYYHSIQIYEQKRRPNHHCSQEFF*(+)
MPIFETRGEEIINFITKKILDCNDDSGDVSAHKSEWSDSTQSCLLKRLVDLLEEKKVHLPSILQ
SLGCIAQIAMPIFETRGEEIINFITKKILDCNDDSGDVSAHKSEWSDSTQSCLLKRLVDLLEEK
KVHLPSILQSLGCIAQIAMPIFETRGEEIINFITKKILDCNDDSGDVSAHKSEWSDSTQSCLLK
RLVDLLEEKKVHLPSILQSLGCIAQIAMPIFETRGEEIINFITKKILDCNDDSGDVSAHKSEWS
DSTQSCLLK(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	10350609-10350370(+) 10350613-10350524(+) 10350575-10350357(-)
Potential amino acid sequence	MDGKCTFFSSNKSTSLFNKQL(+) MANALSFPPTSPQASSINNFEYYHSIQIYEQKRRPNHHCSQEFF(+) MPIFETRGEEIINFITKKILDCNDDSGDVSAHKSEWSDSTQSCLLKRLVDLLEEKKVHLPSILQ SLGCIAQIAMPIFETRGEEIINFITKKILDCNDDSGDVSAHKSEWSDSTQSCLLKRLVDLLEEK KVHLPSILQSLGCIAQIAMPIFETRGEEIINFITKKILDCNDDSGDVSAHKSEWSDSTQSCLLK RLVDLLEEKKVHLPSILQSLGCIAQIAMPIFETRGEEIINFITKKILDCNDDSGDVSAHKSEWS DSTQSCLLK(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os06g0286351_circ_g.7

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