Plant Circular RNA Database

Detail information of Os06g0286351_circ_g.5

			
						 General Information
					
						CircRNA Name
						Os06g0286351_circ_g.5
					
						ID in PlantcircBase
						osa_circ_030568
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr6: 10350128-10351113  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os06g0286351						
					
						Parent gene annotation
						
							Armadillo-type fold domain containing protein. (Os06t0286351-01)
;Similar to AF-4 domain containing protein-like protein. (Os06t0
286351-02);Similar to AF-4 domain containing protein-like protei
n. (Os06t0286351-03);Similar to AF-4 domain containing protein-l
ike protein. (Os06t0286351-04)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os06g0286351_circ_g.6 Os06g0286351_circ_g.7 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os06t0286351-02:5
Os06t0286351-03:5
Os06t0286351-01:5
Os06t0286351-04:5

General Information
CircRNA Name	Os06g0286351_circ_g.5
ID in PlantcircBase	osa_circ_030568
Alias	NA
Organism	Oryza sativa
Position	chr6: 10350128-10351113 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os06g0286351
Parent gene annotation	Armadillo-type fold domain containing protein. (Os06t0286351-01) ;Similar to AF-4 domain containing protein-like protein. (Os06t0 286351-02);Similar to AF-4 domain containing protein-like protei n. (Os06t0286351-03);Similar to AF-4 domain containing protein-l ike protein. (Os06t0286351-04)
Parent gene strand	-
Alternative splicing	Os06g0286351_circ_g.6 Os06g0286351_circ_g.7
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os06t0286351-02:5 Os06t0286351-03:5 Os06t0286351-01:5 Os06t0286351-04:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GAGCAATACCCTCTTTAAGTAGTTCATTATCCTCCTTCAGGAGCTCAATGATATCTTCTTCAAG
TCCAGACAAAAGTGAAGGGAAGAAACTAGATACTGCcttgaaatcatatttgcagaaatatcac
catatgtaaggatattcttaaggatgcccattaatttttcaattcccggatgtgcttgagcatc
tttgcaag

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 635
Transcript exons: 10350128-10350264,10350355-10350420,10350502-10350654,10
350740-10350866,10350962-10351113
CTTGAAATCATATTTGCAGAAATATCACCATATGTAAGGATATTCTTAAGGATGCCCATTAATT
TTTCAATTCCCGGATGTGCTTGAGCATCTTTGCAAGGTTGACAGCTCTTCACCAAAGTTTTAAT
GCCATAAATCTTCAATAAACAACTTTGAGTACTATCACTCCATTCAGATTTATGAGCAGAAACG
TCGCCCGAATCATCATTGCAGTCAAGAATTTTTTTAGTTATAAAATTTATTATCTCTTCTCCCC
TTGTTTCAAAAATTGGCATTGCTATCTGAGCTATACACCCCAAGGATTGTAAGATGGATGGCAA
ATGCACTTTCTTTTCCTCCAACAAGTCCACAAGCCTCTTGTAAAGAACAGATAGAGACATCAGG
CCATCATCTTTTGTTATAGCAGCCAAAGCATGAACAGAGTATTTTGCCTGCTTCCGTGTTCCTT
CCAAACATAGCCGCTCTAGTAGAAGAGTAATGGAACTTGATGAAGCTAGTTGTTCACGAATGTT
GCCACCAGCCTTCGACAGAACATGAGCAATACCCTCTTTAAGTAGTTCATTATCCTCCTTCAGG
AGCTCAATGATATCTTCTTCAAGTCCAGACAAAAGTGAAGGGAAGAAACTAGATACTGC
						
					

						Genomic sequence
						
							CTTGAAATCATATTTGCAGAAATATCACCATATGTAAGGATATTCTTAAGGATGCCCATTAATT
TTTCAATTCCCGGATGTGCTTGAGCATCTTTGCAAGGTTGACAGCTCTTCACCAAAGTTTTAAT
GCCATAAATCTAGGAAGAAAATACAAAACAACATGTAGAGGTCAATTAACTTTGATGGATGGAT
TGAAGTGAGACCTATAAAACCATAATTTCACTAACCTTCAATAAACAACTTTGAGTACTATCAC
TCCATTCAGATTTATGAGCAGAAACGTCGCCCGAATCCTGGTGATGCACTCCGAATTGCAATAA
AAATGGAAATAAAATGGAGAAGGAAAGGAGAAATTTAAAGAGCGTAAGTCTTACATCATTGCAG
TCAAGAATTTTTTTAGTTATAAAATTTATTATCTCTTCTCCCCTTGTTTCAAAAATTGGCATTG
CTATCTGAGCTATACACCCCAAGGATTGTAAGATGGATGGCAAATGCACTTTCTTTTCCTCCAA
CAAGTCCACAAGCCTCTGCAAGGTTACGAATGTAGAGCATAACATGTTAGAAATCTCAAATATA
TGATCCAAGAAGAAACAGCTAACAACAAATTTGAACCTTGTAAAGAACAGATAGAGACATCAGG
CCATCATCTTTTGTTATAGCAGCCAAAGCATGAACAGAGTATTTTGCCTGCTTCCGTGTTCCTT
CCAAACATAGCCGCTCTAGTAGAAGAGTAATGGAACTGAAACAGAAGGCACAGCATCTTAGTTC
TATACTCTTATATCCTTATTAAGTAGTGAAAAGAATAATGTCTCATTCATTTCACAAAAGTTGC
ACCTTGATGAAGCTAGTTGTTCACGAATGTTGCCACCAGCCTTCGACAGAACATGAGCAATACC
CTCTTTAAGTAGTTCATTATCCTCCTTCAGGAGCTCAATGATATCTTCTTCAAGTCCAGACAAA
AGTGAAGGGAAGAAACTAGATACTGC
						
					

			
		

Sequences
Splice junction sequence	GAGCAATACCCTCTTTAAGTAGTTCATTATCCTCCTTCAGGAGCTCAATGATATCTTCTTCAAG TCCAGACAAAAGTGAAGGGAAGAAACTAGATACTGCcttgaaatcatatttgcagaaatatcac catatgtaaggatattcttaaggatgcccattaatttttcaattcccggatgtgcttgagcatc tttgcaag
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 635 Transcript exons: 10350128-10350264,10350355-10350420,10350502-10350654,10 350740-10350866,10350962-10351113 CTTGAAATCATATTTGCAGAAATATCACCATATGTAAGGATATTCTTAAGGATGCCCATTAATT TTTCAATTCCCGGATGTGCTTGAGCATCTTTGCAAGGTTGACAGCTCTTCACCAAAGTTTTAAT GCCATAAATCTTCAATAAACAACTTTGAGTACTATCACTCCATTCAGATTTATGAGCAGAAACG TCGCCCGAATCATCATTGCAGTCAAGAATTTTTTTAGTTATAAAATTTATTATCTCTTCTCCCC TTGTTTCAAAAATTGGCATTGCTATCTGAGCTATACACCCCAAGGATTGTAAGATGGATGGCAA ATGCACTTTCTTTTCCTCCAACAAGTCCACAAGCCTCTTGTAAAGAACAGATAGAGACATCAGG CCATCATCTTTTGTTATAGCAGCCAAAGCATGAACAGAGTATTTTGCCTGCTTCCGTGTTCCTT CCAAACATAGCCGCTCTAGTAGAAGAGTAATGGAACTTGATGAAGCTAGTTGTTCACGAATGTT GCCACCAGCCTTCGACAGAACATGAGCAATACCCTCTTTAAGTAGTTCATTATCCTCCTTCAGG AGCTCAATGATATCTTCTTCAAGTCCAGACAAAAGTGAAGGGAAGAAACTAGATACTGC
Genomic sequence	CTTGAAATCATATTTGCAGAAATATCACCATATGTAAGGATATTCTTAAGGATGCCCATTAATT TTTCAATTCCCGGATGTGCTTGAGCATCTTTGCAAGGTTGACAGCTCTTCACCAAAGTTTTAAT GCCATAAATCTAGGAAGAAAATACAAAACAACATGTAGAGGTCAATTAACTTTGATGGATGGAT TGAAGTGAGACCTATAAAACCATAATTTCACTAACCTTCAATAAACAACTTTGAGTACTATCAC TCCATTCAGATTTATGAGCAGAAACGTCGCCCGAATCCTGGTGATGCACTCCGAATTGCAATAA AAATGGAAATAAAATGGAGAAGGAAAGGAGAAATTTAAAGAGCGTAAGTCTTACATCATTGCAG TCAAGAATTTTTTTAGTTATAAAATTTATTATCTCTTCTCCCCTTGTTTCAAAAATTGGCATTG CTATCTGAGCTATACACCCCAAGGATTGTAAGATGGATGGCAAATGCACTTTCTTTTCCTCCAA CAAGTCCACAAGCCTCTGCAAGGTTACGAATGTAGAGCATAACATGTTAGAAATCTCAAATATA TGATCCAAGAAGAAACAGCTAACAACAAATTTGAACCTTGTAAAGAACAGATAGAGACATCAGG CCATCATCTTTTGTTATAGCAGCCAAAGCATGAACAGAGTATTTTGCCTGCTTCCGTGTTCCTT CCAAACATAGCCGCTCTAGTAGAAGAGTAATGGAACTGAAACAGAAGGCACAGCATCTTAGTTC TATACTCTTATATCCTTATTAAGTAGTGAAAAGAATAATGTCTCATTCATTTCACAAAAGTTGC ACCTTGATGAAGCTAGTTGTTCACGAATGTTGCCACCAGCCTTCGACAGAACATGAGCAATACC CTCTTTAAGTAGTTCATTATCCTCCTTCAGGAGCTCAATGATATCTTCTTCAAGTCCAGACAAA AGTGAAGGGAAGAAACTAGATACTGC

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_006663* 						
					
						PMCS
						0.367923081

Conservation Information
Conserved circRNAs	osi_circ_006663*
PMCS	0.367923081

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							10351062-10350161(+)
10350765-10351052(-)
						
						Potential amino acid sequence
						
							MISSSSPDKSEGKKLDTALKSYLQKYHHM*(+)
MSLSVLYKRLVDLLEEKKVHLPSILQSLGCIAQIAMPIFETRGEEIINFITKKILDCNDDSGDV
SAHKSEWSDSTQSCLLKIYGIKTLVKSCQPCKDAQAHPGIEKLMGILKNILTYGDISANMISRQ
YLVSSLHFCLDLKKISLSS*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	10351062-10350161(+) 10350765-10351052(-)
Potential amino acid sequence	MISSSSPDKSEGKKLDTALKSYLQKYHHM(+) MSLSVLYKRLVDLLEEKKVHLPSILQSLGCIAQIAMPIFETRGEEIINFITKKILDCNDDSGDV SAHKSEWSDSTQSCLLKIYGIKTLVKSCQPCKDAQAHPGIEKLMGILKNILTYGDISANMISRQ YLVSSLHFCLDLKKISLSS(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os06g0286351_circ_g.5

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