Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d028384_circ_g.2 |
ID in PlantcircBase | zma_circ_003327 |
Alias | ovule_test_circ_004579 |
Organism | Zea mays |
Position | chr1: 32802543-32807300 JBrowse» |
Reference genome | AGPv4.38 |
Type | ei-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d028384 |
Parent gene annotation |
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein |
Parent gene strand | + |
Alternative splicing | Zm00001d028384_circ_g.1 Zm00001d028384_circ_g.3 Zm00001d028384_circ_g.4 Zm00001d028384_circ_g.5 |
Support reads | NA |
Tissues | ovule |
Exon boundary | No-Yes |
Splicing signals | GT-CA |
Number of exons covered | Zm00001d028384_T005:3 Zm00001d028384_T007:2 Zm00001d028384_T006:2 Zm00001d028384_T004:3 Zm00001d028384_T009:2 Zm00001d028384_T002:3 Zm00001d028384_T001:3 Zm00001d028384_T008:2 Zm00001d028384_T003:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.252603946 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | zma-miR159e-3p |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Tang et al., 2018 |