Detail information of Zm00001d028384_circ_g.2


General Information
CircRNA Name Zm00001d028384_circ_g.2
ID in PlantcircBase zma_circ_003327
Alias ovule_test_circ_004579
Organism Zea mays
Position chr1: 32802543-32807300  JBrowse»
Reference genome AGPv4.38
Type   ei-circRNA
Identification method find_circ
Parent gene Zm00001d028384
Parent gene annotation Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
Parent gene strand +
Alternative splicing Zm00001d028384_circ_g.1 Zm00001d028384_circ_g.3 Zm00001d028384_circ_g.4 Zm00001d028384_circ_g.5
Support reads NA
Tissues ovule
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered Zm00001d028384_T005:3
Zm00001d028384_T007:2
Zm00001d028384_T006:2
Zm00001d028384_T004:3
Zm00001d028384_T009:2
Zm00001d028384_T002:3
Zm00001d028384_T001:3
Zm00001d028384_T008:2
Zm00001d028384_T003:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGGCGTACCCGCTGGCTGATGCGCAGCTGACGATAGGTATCATCGATATCATCCAGCAGGCCG
CCAACTACAAGCAGCTCAAGAAGGGAGCTAACGAAGgcgacgaaaaccctgaatagggggatat
cggagttcgttgtgatggcggcggacacggagcctctcgagatcctgctccacctccccttgtt
agccgagg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCGACGAAAACCCTGAATAGGGGGATATCGGAGTTCGTTGTGATGGCGGCGGACACGGAGCCTC
TCGAGATCCTGCTCCACCTCCCCTTGTTAGCCGAGGATAAGGTACTGATTTTTTCTCTCTCCTC
TTTTGTTTTGTAATGTAGTGCTGTGTGATTATTGTTTTTTTTGGATTATAGTGTTTTTTGTTAT
TAGATCTTTTTCTGTGTGATAAGGTAGGTAGTTTGGACGCCACTATCTGTCATGTTGGTTGTGA
ATACATCATATTATCAGGCGCATCTTTGCCACATAACTCTGGATGCAGCTGAAGTTGTCTTGAC
TGCCCTTTATTTACTGTTACATGGAAAACAAGAATTTGTTGTATTGTGAGTGACAATGAACGTC
GTTGACTGCTTAAGCTACATAGGATTTATTATTTGCTTTGATTGAAATGAAGCCAATCTTTTGA
TGATAAACATCGTGGATACTTGCAACATTATGTTGTCAGATACTGTCTTACTATGTCCACAAAC
TAATTACTTCAACTATGTTTCTCAGATACTCCCCACGTTAGAGAATATAATGCTCATTTTACAT
CGTTTTCAGCTAACATTTTTTCTATTAGCATATACTTTTTGTGTCGCGAGGTTGATATCATGAG
ATACGTACCCAAAACGTTTTTTATGACTAACATTTGATAACATAATAAGATACTTATGCAGTAA
TTGTTGGTTAATTTTGTCATAACAAAATGGAATATATCTTTCAAGGGGTTTGAATTGAAATGCC
TCAAAGCCAGGAGTTTTTTTTTACAAATTTAGTGCTAGCAGGTTAGATGCTGTTGAGTAACAGA
TATGCAATGATAGTTCAATTCAGCCCGGCAATGCAGTCATGTTAGTTGATTTGGCTTGTGTTTA
GTTAGTTCTACATGATTCTTTGTGCTCTCTTTATCCTGCTTGGTTGATGACCTACTTGTACACT
TAATGTTAGCATACATAATGACTATGGCAGCATTCATCATTGGATCTTATGCAAACAAAAAGAT
TCACCATTGGCTAATAAATTTGCCTTATGGTATGTGCAGAACGTCCCATATGTATTTGTTCCAT
CGAAACAAGCTCTTGGCCGTGCTTGTGGTGTGACAAGACCCGTCATTGCTTGCTCAGTGACCAG
CAATGAGGGTAGCCAGCTGAAACAACAGATACAGGGTCTCAAGGTACTTAATGTTCTGTCATGT
AGCACTTGTTAATACTTTATATTTTAGTGTTTTTATATATGAATATTATGATTGTGTAATATTT
ATACGCTGTTTAATAGCCTTATCGTCATGTTCTTGTATACATCTGTGTAGATTAATCAAATTTA
ATGAAATTACAGGACTCGATTGAGAAGCTTCTCATCTGATTTACCTAAGATCTTTCAGTGTGAT
GGGCCTCGGCGACACATTTTTCAGAGGCTTGGACTGGTGATGGTGTCTTGTTTACATTACGCTT
TCCAAACTATATTTGAACACTGCTAAGTCAATCATATTTGAATTGTGCTTCACTTTATATTTGT
GATTGTCATGTATCCTCAAGATGCCTCTGTATCGTGGTGGCTGGTTTCTGTTCTGGATCCGACC
ACATCATTGTGATGGCTGATTGCTATGTTTTTGAGTATTGGATCGTTCCCATCGATTAACTTCT
GTGATGACGAATCAGCGCAAATAAAGTCACTTATATGTGATCACGAGCAGCGCAAATAAAGTTG
TATGTGGGGGCATAAATAACTGAACTGAAGAATTGGTTCATTAGAACAGCCCCAGATCGCAGGT
AACAAAAACATTCTGGTTCCTACACTCGGATAACTTGGTAGGGAACCAAACTGGATACAAAGCA
GCCTGGCCTGGGCGGTTGATTGCTTGGCTGTATACTTTTGGTCCTGGCATAGTTCGCCAGTTGC
AAAATGCTCTGTAGTGTTCGTTCGGTTAGTCTGGATTGGATTGGAGGGCAGGAACCATTCCAGC
TACAATGTAATACAAATGTGTGAACCATTCTAACCCTAAACTATTCTAGGCACTGGTTCCGGAG
CAATCAAGCGGGGCCTTCGGCAGCCTAGGAACTACTGTTCCAGGCCGAGATTCAGTGCATCCGG
GTGTGTCACTCTTTCCAGGCAGAGAACTGTTCCAGGCCGGGATTTAAAGGCCTGTTCGGCAGGC
TAGGATTGAAGAAGGCTGTTTTATAAACACAGAACATATTTGAACAATCTGACACTGCTGCTTT
ATAAACGCAGTGAATAATCAACCAATCTGACAGTCCATCATTCTTTCTACCATAGGATAGCATG
CTGCCGAGACAATCTGGCAGTCTTGCTACCAAAATAAGACAATCAAGAAACATAGAACAATCTT
GATAGACTGACATCTTCAACACATGCGCTAAGAAGAAACAGAACATATGTGTTGCGAAGAAACA
TCACTTTAGAACTAAGCATATCATTTCAAAATAAGAAACCTCAACATATGCTAAGCATCACCGA
TTAATCACCCAAACCTGTCCAAACAAATGGAACAATCAGATTGGAAGATAAAGGCCCAAGTGAA
TATGGTTAAGTGGAAGGTAAAGACATAAATATTATACTCTTTCCGTTTTTTTATTTGTCGCCAT
TTAGTTTAAAAATGAACTAGGGACGATAAATATTCGAGAACGGATGTTGTACAATGCTAAACCA
TCTCATTTCATAGCAGAGGCAATCAACATCTGTAGCTGGTGGCTCAGGACCTCGTATGCACCTC
AACCTGGCCATGTATCCATTTCTACTGTGCAGTGCAGTAAGAAACATAAAGAGGCAGAATTCCG
TTGCCATTGTCATGGCTAAAGGCTTAAAGTAAGACACTTCATCTAAATGCAAAGGCAGCTAGCA
GGGCATATTGTAAAACCAGTAACGGTGACCAGTGTTTGGCGTCCGCCTTAGCATTGGGGGGAGA
GATAAACGTGTCACTGAATCTGAATCTATGCCTGTTTTTCTCATGAACAATGCTACTACTACTA
CTGCTGTTGCACTACTGCATCAATGAAGCAGTTCAGTAAACAATGCTACGGCCGTGACGAGAAG
CGCCGCCAGAACATACACAGGTGCCTGAAAACACGTAATCCACGGAGCAGATGGTTTCTTGAAT
CCAATACTCTGCAGCACCAAGATTTGTCTTCTTCTACAGATCAATACTCTGCATACACAGCTGG
CTGCAGCTTAACGCAAAGAGATGCAAACTGGCGCAAACACTCTTTTACTTCCAATTGGTTTTGG
AATATGAGCTCCAAGCAAACTCATCCCTCAAGCTTACTCACCTACAAAAAAAATTCAAAGTACA
CCGTTGCAATTACACAAAATGATGAGTAATTCAGGGTCATCTTGCTACAAAAAAGCAAAACTAG
CAACATAGAGCACGCACACTACTGATTTACCCTTTCCTTTTTAATTTTTTGACTGTACTTCAAA
CTGATGGTCCCTTGATTTTTTTGTATCTTTTCCTGGTGCTACTGTCTTCTTGGTTATCGTCTCT
GTCCTACTACCTACCTATCTCTGTTGATGCATCTCTATGTCACTATGTGATTCTAACAACCAAG
ATGCACACGTGCCCTCTGTTCAATACACCACAAAAAGTTGAGTCAATCCTATTTTTCCCTGGTA
AGAAGGTGCACTTGCAATCTCAGAAATGACGGTACAAAACCTCACATAATAAAATTCCGTTTAT
TTTTCTTCTCATTTGCAGACACAGACACACCTTGAACCAATGCTTCAGCTTTTCCTTGCTCCAA
AACTATCAGTACCTCTTACATAAAATCACATGCTTCACTGTCAATGCAACAAATTAAAGGCCTA
TTTGAATCCCATGAACTAATTTAGCCACTTTGTGAGCTAAAAATCCAAACATAAAGAGCTAAAA
GTAACTAAAATGGTAAAAGATATTCTTTTAGTCATTTTTAACTCTTTCTGTTTCAATATTTAGC
TTCTAGAGTGACGAAACTTGCTCTAGCTCAAGGGATCCAAACATGCCCTAAGTAGTTGTGTTCT
CAGCTTTTAGTGCAACGTGGTTAGATTTGTCAGGATTATATCTTCTTCTTCAAATAGAACAATC
TTATACACATTATTTACATCAATGTGTATACAAATTACAATCATTTCTATCCATGATGTAGCGC
AGGTAAATGGGTTGATCCCAGATCCCACATTGATAGTCTTCTTAGTATAAACTCATGTATGCGG
ACTGGCCCAACTCAGACAAGAGCGCGGCAACACCGCGCATATACATGGAATGAGAAGGGCTCAG
CTACAGCCAAGCGAATAAATATACTGTGAATTAACCCTAACCTAACCGAAGCGTCCGCCTCCCA
CACACGGGACTCCGGCCGCGAGAACCCGCGACTAAGCCAGGACGCGGGACGCCACAGCCACCGG
CCTCAGCATCCGCCTAGGACGAATAACCCTTCTAGGCTGCCGCCGCCGCCGTCCTTAGCTCATA
TTGTTGCCGGCGAAGAGCGCCCCAGGTATTCCCAGCCCCTTCTCTTTCCTGTCCGCTGCGCAAA
ACTGAATTCTCGAACTCTCAACCTCAAGTTATTTGGCTACTTCTAACTTTTTGCAAAAAATTAT
CGGGTCCCTTTACTAGATCCGCCCCTGCTATGGAGTCGGCGGTGAACCCGAAGGCGTACCCGCT
GGCTGATGCGCAGCTGACGATAGGTATCATCGATATCATCCAGCAGGCCGCCAACTACAAGCAG
CTCAAGAAGGGAGCTAACGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.252603946
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs zma-miR159e-3p
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tang et al., 2018