Detail information of Zm00001d028384_circ_g.5


General Information
CircRNA Name Zm00001d028384_circ_g.5
ID in PlantcircBase zma_circ_006454
Alias zma_circ_0000609
Organism Zea mays
Position chr1: 32803899-32808700  JBrowse»
Reference genome AGPv4.38
Type   e-circRNA
Identification method find_circ
Parent gene Zm00001d028384
Parent gene annotation Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
Parent gene strand +
Alternative splicing Zm00001d028384_circ_g.1 Zm00001d028384_circ_g.2 Zm00001d028384_circ_g.3 Zm00001d028384_circ_g.4
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d028384_T006:4
Zm00001d028384_T004:1
Zm00001d028384_T001:1
Zm00001d028384_T002:1
Zm00001d028384_T009:4
Zm00001d028384_T008:4
Zm00001d028384_T007:4
Zm00001d028384_T003:1
Zm00001d028384_T005:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGCTCTTGGCCGTGCTTGTGGTGTGACAAGGCCTGTCATTGCTTGCTCAGTGACCAGCAATGAG
GGTAGCCAGCTGAAACAACAGATACAGGGTCTCAAGgactcgattgagaagcttctcatctgat
ttacctaagatctttcagtgtgatgggcctcggcgacacatttttcagaggcttggactggtga
tggtgtct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GACTCGATTGAGAAGCTTCTCATCTGATTTACCTAAGATCTTTCAGTGTGATGGGCCTCGGCGA
CACATTTTTCAGAGGCTTGGACTGGTGATGGTGTCTTGTTTACATTACGCTTTCCAAACTATAT
TTGAACACTGCTAAGTCAATCATATTTGAATTGTGCTTCACTTTATATTTGTGATTGTCATGTA
TCCTCAAGATGCCTCTGTATCGTGGTGGCTGGTTTCTGTTCTGGATCCGACCACATCATTGTGA
TGGCTGATTGCTATGTTTTTGAGTATTGGATCGTTCCCATCGATTAACTTCTGTGATGACGAAT
CAGCGCAAATAAAGTCACTTATATGTGATCACGAGCAGCGCAAATAAAGTTGTATGTGGGGGCA
TAAATAACTGAACTGAAGAATTGGTTCATTAGAACAGCCCCAGATCGCAGGTAACAAAAACATT
CTGGTTCCTACACTCGGATAACTTGGTAGGGAACCAAACTGGATACAAAGCAGCCTGGCCTGGG
CGGTTGATTGCTTGGCTGTATACTTTTGGTCCTGGCATAGTTCGCCAGTTGCAAAATGCTCTGT
AGTGTTCGTTCGGTTAGTCTGGATTGGATTGGAGGGCAGGAACCATTCCAGCTACAATGTAATA
CAAATGTGTGAACCATTCTAACCCTAAACTATTCTAGGCACTGGTTCCGGAGCAATCAAGCGGG
GCCTTCGGCAGCCTAGGAACTACTGTTCCAGGCCGAGATTCAGTGCATCCGGGTGTGTCACTCT
TTCCAGGCAGAGAACTGTTCCAGGCCGGGATTTAAAGGCCTGTTCGGCAGGCTAGGATTGAAGA
AGGCTGTTTTATAAACACAGAACATATTTGAACAATCTGACACTGCTGCTTTATAAACGCAGTG
AATAATCAACCAATCTGACAGTCCATCATTCTTTCTACCATAGGATAGCATGCTGCCGAGACAA
TCTGGCAGTCTTGCTACCAAAATAAGACAATCAAGAAACATAGAACAATCTTGATAGACTGACA
TCTTCAACACATGCGCTAAGAAGAAACAGAACATATGTGTTGCGAAGAAACATCACTTTAGAAC
TAAGCATATCATTTCAAAATAAGAAACCTCAACATATGCTAAGCATCACCGATTAATCACCCAA
ACCTGTCCAAACAAATGGAACAATCAGATTGGAAGATAAAGGCCCAAGTGAATATGGTTAAGTG
GAAGGTAAAGACATAAATATTATACTCTTTCCGTTTTTTTATTTGTCGCCATTTAGTTTAAAAA
TGAACTAGGGACGATAAATATTCGAGAACGGATGTTGTACAATGCTAAACCATCTCATTTCATA
GCAGAGGCAATCAACATCTGTAGCTGGTGGCTCAGGACCTCGTATGCACCTCAACCTGGCCATG
TATCCATTTCTACTGTGCAGTGCAGTAAGAAACATAAAGAGGCAGAATTCCGTTGCCATTGTCA
TGGCTAAAGGCTTAAAGTAAGACACTTCATCTAAATGCAAAGGCAGCTAGCAGGGCATATTGTA
AAACCAGTAACGGTGACCAGTGTTTGGCGTCCGCCTTAGCATTGGGGGGAGAGATAAACGTGTC
ACTGAATCTGAATCTATGCCTGTTTTTCTCATGAACAATGCTACTACTACTACTGCTGTTGCAC
TACTGCATCAATGAAGCAGTTCAGTAAACAATGCTACGGCCGTGACGAGAAGCGCCGCCAGAAC
ATACACAGGTGCCTGAAAACACGTAATCCACGGAGCAGATGGTTTCTTGAATCCAATACTCTGC
AGCACCAAGATTTGTCTTCTTCTACAGATCAATACTCTGCATACACAGCTGGCTGCAGCTTAAC
GCAAAGAGATGCAAACTGGCGCAAACACTCTTTTACTTCCAATTGGTTTTGGAATATGAGCTCC
AAGCAAACTCATCCCTCAAGCTTACTCACCTACAAAAAAAATTCAAAGTACACCGTTGCAATTA
CACAAAATGATGAGTAATTCAGGGTCATCTTGCTACAAAAAAGCAAAACTAGCAACATAGAGCA
CGCACACTACTGATTTACCCTTTCCTTTTTAATTTTTTGACTGTACTTCAAACTGATGGTCCCT
TGATTTTTTTGTATCTTTTCCTGGTGCTACTGTCTTCTTGGTTATCGTCTCTGTCCTACTACCT
ACCTATCTCTGTTGATGCATCTCTATGTCACTATGTGATTCTAACAACCAAGATGCACACGTGC
CCTCTGTTCAATACACCACAAAAAGTTGAGTCAATCCTATTTTTCCCTGGTAAGAAGGTGCACT
TGCAATCTCAGAAATGACGGTACAAAACCTCACATAATAAAATTCCGTTTATTTTTCTTCTCAT
TTGCAGACACAGACACACCTTGAACCAATGCTTCAGCTTTTCCTTGCTCCAAAACTATCAGTAC
CTCTTACATAAAATCACATGCTTCACTGTCAATGCAACAAATTAAAGGCCTATTTGAATCCCAT
GAACTAATTTAGCCACTTTGTGAGCTAAAAATCCAAACATAAAGAGCTAAAAGTAACTAAAATG
GTAAAAGATATTCTTTTAGTCATTTTTAACTCTTTCTGTTTCAATATTTAGCTTCTAGAGTGAC
GAAACTTGCTCTAGCTCAAGGGATCCAAACATGCCCTAAGTAGTTGTGTTCTCAGCTTTTAGTG
CAACGTGGTTAGATTTGTCAGGATTATATCTTCTTCTTCAAATAGAACAATCTTATACACATTA
TTTACATCAATGTGTATACAAATTACAATCATTTCTATCCATGATGTAGCGCAGGTAAATGGGT
TGATCCCAGATCCCACATTGATAGTCTTCTTAGTATAAACTCATGTATGCGGACTGGCCCAACT
CAGACAAGAGCGCGGCAACACCGCGCATATACATGGAATGAGAAGGGCTCAGCTACAGCCAAGC
GAATAAATATACTGTGAATTAACCCTAACCTAACCGAAGCGTCCGCCTCCCACACACGGGACTC
CGGCCGCGAGAACCCGCGACTAAGCCAGGACGCGGGACGCCACAGCCACCGGCCTCAGCATCCG
CCTAGGACGAATAACCCTTCTAGGCTGCCGCCGCCGCCGTCCTTAGCTCATATTGTTGCCGGCG
AAGAGCGCCCCAGGTATTCCCAGCCCCTTCTCTTTCCTGTCCGCTGCGCAAAACTGAATTCTCG
AACTCTCAACCTCAAGTTATTTGGCTACTTCTAACTTTTTGCAAAAAATTATCGGGTCCCTTTA
CTAGATCCGCCCCTGCTATGGAGTCGGCGGTGAACCCGAAGGCGTACCCGCTGGCTGATGCGCA
GCTGACGATAGGTATCATCGATATCATCCAGCAGGCCGCCAACTACAAGCAGCTCAAGAAGGGA
GCTAACGAAGGTACCGTGCCAATCCCTTGTGCACGTCTCCTGACCTGTACTCTGTTAATTCTGG
GCCTTTCTTACTCAACTCGAGTCTTTTGTGTTTGGCGTAGCGACGAAGACCCTGAACAGGGGGA
TATCGGAGTTCGTAGTGATGGCGGCGGACACGGAGCCGCTCGAGATCCTCCTCCACCTCCCCTT
GCTAGCTGAGGATAAGGTGCTTATAATTTGCCCTTTGTTTCACGTACACTAGTGCTGTGTGTGA
TTATTGTTTTGTTTTTGCCCTTTGTTGTATTGTTAGTGAGAATGAACGGTCCTTTGTTAACTGC
TTAAGTTATAGAGGATTTCTTAGTTGCTTCGAATGCAATGAAGCCAATCTTTTGAGTTATGGAT
GCTTGCAACATTGTTGTCAGATACTCATTGTGTGTGACTCTGACAAAAAAATAATTACTTCAAC
TGTGTTTCTTAGTTAATTTCTTATTTAATTAACTGTAAATGGTACTCCCTGCGTTTGAAAATAT
ATTGCTCAATTTGCATTCCCTTCAATCAACAATTTTTCCATTAGTATATAATTCTTGTGCTGCA
AGGTTGGTATCATTAGATTCATATTCAAAACCTCTTTCTTATGTTTATACTTTTTGACAACACA
ATAATATATTTATAGAGTAATTGCTGGTTAAATTCTGCCATAACAAAATGAAACATACCTTTTT
TTTAAAAAAATGAGAGGGGTATGAACCCTCAATGCCTAGGAGTTGAATTTCTTGTGAATTTAGC
GCTAGCAGGTTATATTTCGTTATGTAACAGACATGTAGTGACAATTCAGCCTGGCAGTGCACTC
CTGTTAGCTGATTTAGCTTGTGTTTATTAGTTCTACGTCCTTTTTTTTGTGCTCTCTTTATTCT
GCTTGGTTGATGACATGAACCACCTGTATACATCACTTCTGTTAGTAGACTTCTCAATGAATAT
GGCAACATTCACCATTTTTTTTCGAACACGCAGGAGAACTGTGTATCATTATATTAAGAAGAAA
GAAAGGTCTAATATAGACTGATTACAAGCGCCTCAAAAGGCAGCCACACATAACCATACTTCCC
AAGCTACACCCACAACCTTCTAAGAGCAGAAGCTCCAGAAATACCCCATAAGCTAGCATCCCCA
TGAATCTTCTGCAAAAGAGCGTTGATGTTAGGGGAGGATGCATCAAACACACAAGCATTTCTAT
GTTTTCAAATCCTTCAGGCAACATCACCATTGGCTAATAAATTTATTCTATGCTATTTGCAGAA
CGTGCCATATGTATTTGTTCCATCGAAACAAGCTCTTGGCCGTGCTTGTGGTGTGACAAGGCCT
GTCATTGCTTGCTCAGTGACCAGCAATGAGGGTAGCCAGCTGAAACAACAGATACAGGGTCTCA
AG
Conservation Information
Conserved circRNAs NA
PMCS 0.940379849
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs zma-miR159e-3p
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b