Detail information of Os10g0577800_circ_g.6


General Information
CircRNA Name Os10g0577800_circ_g.6
ID in PlantcircBase osa_circ_008177
Alias NA
Organism Oryza sativa
Position chr10: 23036657-23037102  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os10g0577800
Parent gene annotation Poly(ADP-ribose) polymerase, catalytic region domain containing
protein. (Os10t0577800-01);Similar to Poly polymerase catalytic
domain containing protein, expressed. (Os10t0577800-02)
Parent gene strand -
Alternative splicing Os10g0577800_circ_g.1 Os10g0577800_circ_g.2 Os10g0577800_circ_g.3 Os10g0577800_circ_g.4 Os10g0577800_circ_g.5
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os10t0577800-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGCTTAGATCCATGGTGAACTATTTCTACGTTCCCCATTACAACACGGCACAACATCATATGG
ACAATGCCATTTTCATCAACATCAGAGTAATTCACActgtgatacactatcaggcgaaccagag
ctcaagatcagtgatgaaacctctgataaattgtgacaatcttcttcggtggcaggagaatcta
gcacataa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGTGATACACTATCAGGCGAACCAGAGCTCAAGATCAGTGATGAAACCTCTGATAAATTGTGA
CAATCTTCTTCGGTGGCAGGAGAATCTAGCACATAATGAAAAGGCTCACTCATAAGAAAATCTG
GGGCTGCCAGCTTTACAAGTTATGCAAGGCTAAACAAAACTTTTTAAAGAATGACACAACAGTT
GCGATTAGTTACCTTTGACTCTAGAAGGCAATTTGATGGTGACTACAAATTCAGAATAGATGTG
ACTATTCACATTCATATCCCACACAATGTAATGTTGAGGGTTTTTAATGTCATCTACACCACTA
TCGAAATACTCGTTACTAGGCCGATGCTGCTTAGATCCATGGTGAACTATTTCTACGTTCCCCA
TTACAACACGGCACAACATCATATGGACAATGCCATTTTCATCAACATCAGAGTAATTCACA
Conservation Information
Conserved circRNAs osi_circ_008750
PMCS 0.226077915
Functional Information
Coding potential Y
Potential coding position 23036944-23036863(+)
23037064-23037090(-)
Potential amino acid sequence MLRVFNVIYTTIEILVTRPMLLRSMVNYFYVPHYNTAQHHMDNAIFINIRVIHTVIHYQANQSS
RSVMKPLINCDNLLRWQENL*(+)
MMLCRVVMGNVEIVHHGSKQHRPSNEYFDSGVDDIKNPQHYIVWDMNVNSHIYSEFVVTIKLPS
RVKDSPATEEDCHNLSEVSSLILSSGSPDSVSQCELL*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017