Detail information of Os10g0577800_circ_g.1


General Information
CircRNA Name Os10g0577800_circ_g.1
ID in PlantcircBase osa_circ_008173
Alias Os_ciR2806
Organism Oryza sativa
Position chr10: 23035625-23036030  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method find_circ
Parent gene Os10g0577800
Parent gene annotation Poly(ADP-ribose) polymerase, catalytic region domain containing
protein. (Os10t0577800-01);Similar to Poly polymerase catalytic
domain containing protein, expressed. (Os10t0577800-02)
Parent gene strand -
Alternative splicing Os10g0577800_circ_g.2 Os10g0577800_circ_g.3 Os10g0577800_circ_g.4 Os10g0577800_circ_g.5 Os10g0577800_circ_g.6
Support reads 4
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os10t0577800-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGCGGCCGCCTTTCATATCACACATGAATCAGGAGCTAAGATTGCCTGGAAGAAGTGCACACC
TTATCTTGGAGTCGCATTATTGTTGATATAAGCATTtagtcaagtcggccagttgcttctctca
ccatccgcaccgacgacttcatggtttagccatcatcttggcccacgtgtttgggtgcttcatg
cctcgaca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TAGTCAAGTCGGCCAGTTGCTTCTCTCACCATCCGCACCGACGACTTCATGGTTTAGCCATCAT
CTTGGCCCACGTGTTTGGGTGCTTCATGCCTCGACATAGGGGGCAACTGTTGAAATGCAAGCAA
AGTATATTCTTCTTAGGAAGCATGAAAAAAGATAAACAAAAACATGATTATGCTCTTATGTTCT
TGCAACTCGTTGCAAGTATTTTTCTTTTATGTATTTGAAAAAAAAGTATTTTTCTTTTATGTAT
TGGAAAAAAAAGTATCTTCAGAACATGAAGATCATGACAGCTCTAAGGCAAGGCGGCCGCCTTT
CATATCACACATGAATCAGGAGCTAAGATTGCCTGGAAGAAGTGCACACCTTATCTTGGAGTCG
CATTATTGTTGATATAAGCATT
Conservation Information
Conserved circRNAs NA
PMCS 0.131811166
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015