Plant Circular RNA Database

Detail information of Os01g0691700_circ_g.6

			
						 General Information
					
						CircRNA Name
						Os01g0691700_circ_g.6
					
						ID in PlantcircBase
						osa_circ_003443
					
						Alias
						Os_ciR6033
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr1: 28556511-28559595  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							Os01g0691700						
					
						Parent gene annotation
						
							Similar to Serine/threonine protein phosphatase 2A. (Os01t069170
0-01)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os01g0691700_circ_g.1 Os01g0691700_circ_g.2 Os01g0691700_circ_g.3 Os01g0691700_circ_g.4 Os01g0691700_circ_g.5 Os01g0691700_circ_g.7 Os01g0691700_circ_g.8 Os01g0691700_circ_g.9 						
					
						Support reads
						2
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os01t0691700-01:8

General Information
CircRNA Name	Os01g0691700_circ_g.6
ID in PlantcircBase	osa_circ_003443
Alias	Os_ciR6033
Organism	Oryza sativa
Position	chr1: 28556511-28559595 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	find_circ
Parent gene	Os01g0691700
Parent gene annotation	Similar to Serine/threonine protein phosphatase 2A. (Os01t069170 0-01)
Parent gene strand	+
Alternative splicing	Os01g0691700_circ_g.1 Os01g0691700_circ_g.2 Os01g0691700_circ_g.3 Os01g0691700_circ_g.4 Os01g0691700_circ_g.5 Os01g0691700_circ_g.7 Os01g0691700_circ_g.8 Os01g0691700_circ_g.9
Support reads	2
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os01t0691700-01:8

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CACATACCCTGCAATACCTTTTTTCCAGGTGTGGTCCGCTCCTAATTATTGCTACAGATGTGGA
AATGTTGCTTCTATACTAAGCTTCAGTGAGACAATGgtgaaggagatcctcatcgaggagtcca
acgtgcagccagtgaacagcccggtgaccgtgtgcggagacatccatgggcagttccatgacct
gatgaagc

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GTGAAGGAGATCCTCATCGAGGAGTCCAACGTGCAGCCAGTGAACAGCCCGGTGACCGTGTGCG
GAGACATCCATGGGCAGTTCCATGACCTGATGAAGCTCTTCGCGACTGGGGGGCATGTGCCCGA
GACGAATTATATTTTCATGGTGTGGCTTCTGGAGCATTTTGTGTTTATGTGTTTCTGTGTGTGT
GAGCTTGTTGGTTGAGATGGTTCTGGATGATGCTGTGTTCCTGAATTCAGCTGTGCTTCACGTG
CAGGGTGATTTTGTAGACCGCGGCTTCAACAGTCTGGAGGTCTTCACCATTCTGTTGCTACTAA
AAGCGAGGTATTTGCCTACCTTTTTGTTTGGGATCGTGAATGTTCTGTTTGTTTGTTCGAAAGC
TTTGACCTTTCTGGCACATAGCTGCAGCTGCTTCACTGTTCCGTTTGGTATTACAGTACTTCGA
TGTTATATTACCTTTTTCTACAGGGACATTACATGAAAAAATATGTGAATGGTTGCAGCAGTAG
TTTACCTTCCTTAGATGTGAATCATGTTGTTGTATGGTCCTGCCTGTCGTTTGATTATATGCCA
AATCCTGTTGTCTTTTCATTACTGCCTTCTCCCCTTATTTTGCCTGGATAACCTTGAGCAATGT
ATGGGGTCAATGTGTTGTTCTATACTTCTATATAATACAAATAGCTCCCAGGAGTTGAACTGAA
ATGCTGAATAGTTGTAGGATGAGACACACTGTGATCTAATTGTGGCTCGTGCAATTGAGCCTAG
TTGGCTGAATTTTGAAATTGGTATTCCTGTTGTTGTTTCACAACTTGGACTGCTAATTTGAGTA
GAATGGTTGCACTGTTAAGTAGTGAACAATTCCTGTAAGACTCCCTAGTCCTTGCTAGTTTCAT
TTGTTCTTGGTTGCACTCATTTTCTCAAGGATTCTGATTTATAGTTTGTACCCAAGTGTTACTA
TCTGTGGCTCATTCTTGCTATTGGGTTTCCTGATTGTGATTAGGTACCCTGCACACATAACGCT
TCTGCGTGGAAATCATGAAAGCAGACAGTTGACACAGGTATTTCCTGGTGCGGACAATGTTTTC
ATTTATTATCCAATTTATTTCTTTTCTTGAGATTTGAGATACTTATGTTGCACTTTTAAGTGTT
GTATCTCAACTGCTCTGATGATTTATATGTTGTATCTCAACTGTTGCATCCAAGAGGTCCTGTT
TTAGTTGTTTGTTGGCCTGTACATGCATGTATGCTCATATCAAACATTTGTAGGTTTTGTATTA
ATTATCTATGAGGGTATCATGCGTTGGACATAAATATGCATAGCTCCATTACATACAATTCTGA
TTCTGGAGATGTATTAACTCGTATTGCTTTTCTGCCTGAGCAATGTCAAATAATCCGGTCATTA
TATCTATGATTTTCCCTTGGTTTCATGTTCGTTTCAGTGTATGCACATTGGAATGAAATACACG
CACATGTTGCATACTAGTGTATCTTTAGTTCCTAATCAGCACCATATGATGAGCAACCTGTGTT
GTCATCCTTAGATTTTGTTTAATGAGTTGGAATATGTTTTTTACATGGTTCCTTACGTTTCCTT
TATTTGTACAGTTCATCCTCCTGACAGACTTTGTGCTCATATATCTGCACTACACATGTATTTG
GTGCTTATGATGCAGTAACACATAGTATTTTTCTAATTTTAGGTGTATGGTTTCTACGATGAGT
GCCAAAGGAAGTATGGGAATGCGAATGCATGGCGGTATTGCACCGATGTTTTTGACTACCTTAC
TCTTTCAGCAATCATTAATGGCACGGTAAGTTTGTTTGGACATTTTGTAAGTTGTCGGTTTATA
ATTTTTGTGCCAAATAATCATCAAACCATATGCTAAAAATCCAGGTTCTTTGTGTTCATGGTGG
ACTTTCTCCTGATGTGCGCACTGTTGATCAGGTTTGCTGAACTTTTTTTCTTGAAGTTTCATAA
GCATCATTAAGTCTAAGTGTTGTTTATCAAACTCTAATTAATTGTAATACTAACATTATTATTT
TGAGTTACTGTACTACACCTTGTCGATGCAACAATTAGTAGGTCTGGCACTAAGTTCAAAAGAA
TTAGATAATTCTGCCTTTTAAGTATGAATATCCTCAGTTGATCAGGTGATATCCGTTGAACCTT
TTGAAGGGGTAAACAACTGGGTGTTGCCATTTTAGATAATTTGTTGAAATAGTGTATGCTATTT
TCAGTGACACATATATCTCTGACCCATCCTTTAAAGAAAAAATAAATGGTTGTTCGCTAACTTA
GTTGTGGTATACTTTTCTTTGTCGTTAAAATATATACTTTATATCTGACTGTGTACTATTAGAA
ATTAGTTGGTTCATAGCTTTGCATGTTCACAATTTTTTAGTAAGACATGATTCTGTGATTTGTT
TTATCTTAAGATATATTGTTGTCAGATAAGAATTAAAAACCGTCTCAACGCAATATTACAATGA
AATTAATCATGTGATTGAATATCCTTGTTAATTCTATTGACCAGATTCGGACGATTGATCGCAA
TTGTGAAATTCCTCATGAAGGTCCTTTCTGTGATCTAATGTGGAGTGACCCTGAAGAAATAGAG
ACATGGGCTGTTAGCCCTCGTGGAGCTGGTTGGCTTTTTGGATCACGAGTGACAGCTGAGGTAT
GTACAGTCATTTGATGATTTCTTACTCTATTTTTCAGAGAGTGTGTACAGTCACTACATTCTGG
ATCATCTATTAATTGTTTCCTTGTAAATGTTTTTCATCTACCTTTTGCAGTTCAACCATATTAA
CAATCTCGATCTAGTTTGCCGAGCTCACCAGCTGGTTCAGGAAGGCTTAAAGTACATGTTTCAG
GACAAAGGCCTTGTAACTGTAAGTTTCTGTTCACATGTCAGTCCAGATAATCATAGCATTGTAC
TAAGCTTGTATTTCTTTTTTCAATACTGTTATATTGATGCTCACATACCCTGCAATACCTTTTT
TCCAGGTGTGGTCCGCTCCTAATTATTGCTACAGATGTGGAAATGTTGCTTCTATACTAAGCTT
CAGTGAGACAATG
						
					

			
		

Sequences
Splice junction sequence	CACATACCCTGCAATACCTTTTTTCCAGGTGTGGTCCGCTCCTAATTATTGCTACAGATGTGGA AATGTTGCTTCTATACTAAGCTTCAGTGAGACAATGgtgaaggagatcctcatcgaggagtcca acgtgcagccagtgaacagcccggtgaccgtgtgcggagacatccatgggcagttccatgacct gatgaagc
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GTGAAGGAGATCCTCATCGAGGAGTCCAACGTGCAGCCAGTGAACAGCCCGGTGACCGTGTGCG GAGACATCCATGGGCAGTTCCATGACCTGATGAAGCTCTTCGCGACTGGGGGGCATGTGCCCGA GACGAATTATATTTTCATGGTGTGGCTTCTGGAGCATTTTGTGTTTATGTGTTTCTGTGTGTGT GAGCTTGTTGGTTGAGATGGTTCTGGATGATGCTGTGTTCCTGAATTCAGCTGTGCTTCACGTG CAGGGTGATTTTGTAGACCGCGGCTTCAACAGTCTGGAGGTCTTCACCATTCTGTTGCTACTAA AAGCGAGGTATTTGCCTACCTTTTTGTTTGGGATCGTGAATGTTCTGTTTGTTTGTTCGAAAGC TTTGACCTTTCTGGCACATAGCTGCAGCTGCTTCACTGTTCCGTTTGGTATTACAGTACTTCGA TGTTATATTACCTTTTTCTACAGGGACATTACATGAAAAAATATGTGAATGGTTGCAGCAGTAG TTTACCTTCCTTAGATGTGAATCATGTTGTTGTATGGTCCTGCCTGTCGTTTGATTATATGCCA AATCCTGTTGTCTTTTCATTACTGCCTTCTCCCCTTATTTTGCCTGGATAACCTTGAGCAATGT ATGGGGTCAATGTGTTGTTCTATACTTCTATATAATACAAATAGCTCCCAGGAGTTGAACTGAA ATGCTGAATAGTTGTAGGATGAGACACACTGTGATCTAATTGTGGCTCGTGCAATTGAGCCTAG TTGGCTGAATTTTGAAATTGGTATTCCTGTTGTTGTTTCACAACTTGGACTGCTAATTTGAGTA GAATGGTTGCACTGTTAAGTAGTGAACAATTCCTGTAAGACTCCCTAGTCCTTGCTAGTTTCAT TTGTTCTTGGTTGCACTCATTTTCTCAAGGATTCTGATTTATAGTTTGTACCCAAGTGTTACTA TCTGTGGCTCATTCTTGCTATTGGGTTTCCTGATTGTGATTAGGTACCCTGCACACATAACGCT TCTGCGTGGAAATCATGAAAGCAGACAGTTGACACAGGTATTTCCTGGTGCGGACAATGTTTTC ATTTATTATCCAATTTATTTCTTTTCTTGAGATTTGAGATACTTATGTTGCACTTTTAAGTGTT GTATCTCAACTGCTCTGATGATTTATATGTTGTATCTCAACTGTTGCATCCAAGAGGTCCTGTT TTAGTTGTTTGTTGGCCTGTACATGCATGTATGCTCATATCAAACATTTGTAGGTTTTGTATTA ATTATCTATGAGGGTATCATGCGTTGGACATAAATATGCATAGCTCCATTACATACAATTCTGA TTCTGGAGATGTATTAACTCGTATTGCTTTTCTGCCTGAGCAATGTCAAATAATCCGGTCATTA TATCTATGATTTTCCCTTGGTTTCATGTTCGTTTCAGTGTATGCACATTGGAATGAAATACACG CACATGTTGCATACTAGTGTATCTTTAGTTCCTAATCAGCACCATATGATGAGCAACCTGTGTT GTCATCCTTAGATTTTGTTTAATGAGTTGGAATATGTTTTTTACATGGTTCCTTACGTTTCCTT TATTTGTACAGTTCATCCTCCTGACAGACTTTGTGCTCATATATCTGCACTACACATGTATTTG GTGCTTATGATGCAGTAACACATAGTATTTTTCTAATTTTAGGTGTATGGTTTCTACGATGAGT GCCAAAGGAAGTATGGGAATGCGAATGCATGGCGGTATTGCACCGATGTTTTTGACTACCTTAC TCTTTCAGCAATCATTAATGGCACGGTAAGTTTGTTTGGACATTTTGTAAGTTGTCGGTTTATA ATTTTTGTGCCAAATAATCATCAAACCATATGCTAAAAATCCAGGTTCTTTGTGTTCATGGTGG ACTTTCTCCTGATGTGCGCACTGTTGATCAGGTTTGCTGAACTTTTTTTCTTGAAGTTTCATAA GCATCATTAAGTCTAAGTGTTGTTTATCAAACTCTAATTAATTGTAATACTAACATTATTATTT TGAGTTACTGTACTACACCTTGTCGATGCAACAATTAGTAGGTCTGGCACTAAGTTCAAAAGAA TTAGATAATTCTGCCTTTTAAGTATGAATATCCTCAGTTGATCAGGTGATATCCGTTGAACCTT TTGAAGGGGTAAACAACTGGGTGTTGCCATTTTAGATAATTTGTTGAAATAGTGTATGCTATTT TCAGTGACACATATATCTCTGACCCATCCTTTAAAGAAAAAATAAATGGTTGTTCGCTAACTTA GTTGTGGTATACTTTTCTTTGTCGTTAAAATATATACTTTATATCTGACTGTGTACTATTAGAA ATTAGTTGGTTCATAGCTTTGCATGTTCACAATTTTTTAGTAAGACATGATTCTGTGATTTGTT TTATCTTAAGATATATTGTTGTCAGATAAGAATTAAAAACCGTCTCAACGCAATATTACAATGA AATTAATCATGTGATTGAATATCCTTGTTAATTCTATTGACCAGATTCGGACGATTGATCGCAA TTGTGAAATTCCTCATGAAGGTCCTTTCTGTGATCTAATGTGGAGTGACCCTGAAGAAATAGAG ACATGGGCTGTTAGCCCTCGTGGAGCTGGTTGGCTTTTTGGATCACGAGTGACAGCTGAGGTAT GTACAGTCATTTGATGATTTCTTACTCTATTTTTCAGAGAGTGTGTACAGTCACTACATTCTGG ATCATCTATTAATTGTTTCCTTGTAAATGTTTTTCATCTACCTTTTGCAGTTCAACCATATTAA CAATCTCGATCTAGTTTGCCGAGCTCACCAGCTGGTTCAGGAAGGCTTAAAGTACATGTTTCAG GACAAAGGCCTTGTAACTGTAAGTTTCTGTTCACATGTCAGTCCAGATAATCATAGCATTGTAC TAAGCTTGTATTTCTTTTTTCAATACTGTTATATTGATGCTCACATACCCTGCAATACCTTTTT TCCAGGTGTGGTCCGCTCCTAATTATTGCTACAGATGTGGAAATGTTGCTTCTATACTAAGCTT CAGTGAGACAATG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.135721197

Conservation Information
Conserved circRNAs	NA
PMCS	0.135721197

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							28556605-28559592(+)
28556632-28559577(-)
28556583-28559549(-)
						
						Potential amino acid sequence
						
							MKLFATGGHVPETNYIFMGDFVDRGFNSLEVFTILLLLKARYPAHITLLRGNHESRQLTQVYGF
YDECQRKYGNANAWRYCTDVFDYLTLSAIINGTVLCVHGGLSPDVRTVDQIRTIDRNCEIPHEG
PFCDLMWSDPEEIETWAVSPRGAGWLFGSRVTAEFNHINNLDLVCRAHQLVQEGLKYMFQDKGL
VTVWSAPNYCYRCGNVASILSFSETMVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFATG
GHVPETNYIFMGDFVDRGFNSLEVFTILLLLKARYPAHITLLRGNHESRQLTQVYGFYDECQRK
YGNANAWRYCTDVFDYLTLSAIINGTVLCVHGGLSPDVRTVDQIRTIDRNCEIPHEGPFCDLMW
SDPEEIETWAVSPRGAGWLFGSRVTAEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAP
NYCYRCGNVASILSFSETMVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFATGGHVPETN
YIFMGDFVDRGFNSLEVFTILLLLKARYPAHITLLRGNHESRQLTQVYGFYDECQRKYGNANAW
RYCTDVFDYLTLSAIINGTVLCVHGGLSPDVRTVDQIRTIDRNCEIPHEGPFCDLMWSDPEEIE
TWAVSPRGAGWLFGSRVTAEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCG
NVASILSFSETMVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFATGGHVPETNYIFMGDF
VDRGFNSLEVFTILLLLKARYPAHITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYCTDVF
DYLTLSAIINGTVLCVHGGLSPDVRTVDQIRTIDRNCEIPHEGPFCDLMWSDPEEIETWAVSPR
GAGWLFGSRVTAEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCGNVASILS
FSETM(+)
MPPSREELHQVMELPMDVSAHGHRAVHWLHVGLLDEDLLHHCLTEA*(-)
MSPHTVTGLFTGCTLDSSMRISFTIVSLKLSIEATFPHL*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	28556605-28559592(+) 28556632-28559577(-) 28556583-28559549(-)
Potential amino acid sequence	MKLFATGGHVPETNYIFMGDFVDRGFNSLEVFTILLLLKARYPAHITLLRGNHESRQLTQVYGF YDECQRKYGNANAWRYCTDVFDYLTLSAIINGTVLCVHGGLSPDVRTVDQIRTIDRNCEIPHEG PFCDLMWSDPEEIETWAVSPRGAGWLFGSRVTAEFNHINNLDLVCRAHQLVQEGLKYMFQDKGL VTVWSAPNYCYRCGNVASILSFSETMVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFATG GHVPETNYIFMGDFVDRGFNSLEVFTILLLLKARYPAHITLLRGNHESRQLTQVYGFYDECQRK YGNANAWRYCTDVFDYLTLSAIINGTVLCVHGGLSPDVRTVDQIRTIDRNCEIPHEGPFCDLMW SDPEEIETWAVSPRGAGWLFGSRVTAEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAP NYCYRCGNVASILSFSETMVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFATGGHVPETN YIFMGDFVDRGFNSLEVFTILLLLKARYPAHITLLRGNHESRQLTQVYGFYDECQRKYGNANAW RYCTDVFDYLTLSAIINGTVLCVHGGLSPDVRTVDQIRTIDRNCEIPHEGPFCDLMWSDPEEIE TWAVSPRGAGWLFGSRVTAEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCG NVASILSFSETMVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFATGGHVPETNYIFMGDF VDRGFNSLEVFTILLLLKARYPAHITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYCTDVF DYLTLSAIINGTVLCVHGGLSPDVRTVDQIRTIDRNCEIPHEGPFCDLMWSDPEEIETWAVSPR GAGWLFGSRVTAEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCGNVASILS FSETM(+) MPPSREELHQVMELPMDVSAHGHRAVHWLHVGLLDEDLLHHCLTEA(-) MSPHTVTGLFTGCTLDSSMRISFTIVSLKLSIEATFPHL(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015

circRNA

Detail information of Os01g0691700_circ_g.6

Address

Any questions?

Supported by