Detail information of orai.007G351800_circ_g.1


General Information
CircRNA Name orai.007G351800_circ_g.1
ID in PlantcircBase gra_circ_000789
Alias Chr07:58181532|58185740
Organism Gossypium raimondii
Position chrChr07: 58181532-58185740  JBrowse»
Reference genome Graimondii_221
Type   ue-circRNA
Identification method CIRI
Parent gene Gorai.007G351800
Parent gene annotation NA
Parent gene strand -
Alternative splicing orai.007G351800_circ_g.2
Support reads 2
Tissues leaf
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered Gorai.007G351800.1:9
Gorai.007G351800.2:9
Gorai.007G351800.3:9
Gorai.007G351800.5:9
Gorai.007G351800.4:9
Gorai.007G351800.6:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAGCAAAGCTCACATCAGCTGAAACAGCCACAATCGACTCTTTCAGCATTGTTTCGTCGATAT
CGGGACTTATCTTTGTCATCTTTAGGTCAATTAGCTattaaattcactgctggatttccgcaac
agtgtctccacgtagcttgccaaacctgcagctgtaaaagtaactccatcagcatttcttgctt
tcatttct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTAAATTCACTGCTGGATTTCCGCAACAGTGTCTCCACGTAGCTTGCCAAACCTGCAGCTGTA
AAAGTAACTCCATCAGCATTTCTTGCTTTCATTTCTAAGCATCAAATACGCTAATGGCAAAAGC
ACAATCTGACATTTAGTCATAACATGCATGCATTTTAGTATAAATAAAAAATCGGAAGTCAAAT
TGTACATCAGAGTATAAACTAACCAGAATCAATAGGATTGGCAGTTGTTACAGAGATTTTTTGG
CCATTCGAGAGAATGTCGGCCTGCAAAATTCGACCAACATCAAGCGGTTCCGGGGCGTACATTG
TTTTGTTGGCACCTGATAATGGTAGAAAATAGAATCAGCTGTTGGTAAAGGATACAATGATACA
GGTTATCAAGCAACAATGCATTTTCTCACACATTGAAGAGAAAAATTATACCATTCTATATGTT
AGATTCTTATGCTTCACAGGACGGAAGTAGGATACTGAGAATCTGATCAACACAGCTAGCTTAG
ACCTAAAGCACTACTTACAAGAAGGATGAATAGCCACCTGAACAGTAAAAGTACCATAGAAGCT
CTTATACTAGGAACCAAATTGCATTTTGCCCCCCTACTCAAAGAACGAGCAAATTAGTCTCTAT
ACATTAGATCAAAGAGCAAACCACTCCTGTTTAAAATTTCATCCATTTCTACTATTAAAAAGTG
GTCATTGTACGTTAGAATGTGGTGCACGTGACACTATTTGGTTATCATGTTAGCTATGCCAGTT
TTTAACAAGAAATGGATGAATTTCTTAACAGAAAGGATCAACTAGCTCTTTGATCTAACGTACA
GAGACTAATTTGCCTATTTTTGAGTGAAGGGGGCAAAATGCAATCTAGATCCTAATACAGGGCC
CTCTATGATACTTTTACTGCACCTAAACTGATAAACAAGGTGGATTAGGACATTTGTGAAACTA
TATCAGGCTTGATGAGGAAAATAGAGAACATAGATTTTCAATGTAGGAAATTAGTACAGCTGGC
ATTAGGGTGACTCTTCGGTAGTATGATAGAAAGTTCATCATACAGTATGTTCTATATGGCATAA
TTAAATAAAGCAACTTCAGTTAGGCTAGGAGACTTCCACGTAAAGAAGAACATTCATGGAATGG
ATACCTGAAATTACTTCCTTTCGATTTTCATCAGAAGATAGTCGATACCACTGAATCGAAGATT
GTGAAAGCGATGGAGCATTATCAGATCGAGGCTTGAGTTGCAAGCATGAACCAAGAGTTTCAGA
ACCATGCAAAACAAACATGCAGGATTTGTTCTCCTCTGCCCTCTTGTTAATTGCCAGCTGTAAT
TAACTGGCATAGATTAGAACCTCAGATATTATCATAGACTAGTCTTGACCATCCTACTAGCTAA
TATTTAATGTTCTATCGGTACTAAGAAACAACATGCCAGGAAAATGATAGTCACAACAGAACAT
TAACAAGGAAATACAACTTAAAACTAACCGGAGACCATTACGGAAGCAAGGAAATGAGGTAAAA
GTACCATGGAGGCCTTAGGAGTCAAATTGCGTTTTGCCCCCTTTACTAAAAAATGGGCAAATTA
GTCCCTGTACGTTAGATCAAATAGCAAACTGGTAATTTTTGTTGAAATTTTCATCCATTTCTAC
TGTTAAAAATTGGCATGGCAGACAAAATAATCAGAAAATTACATGTGACATGCCACATGTACCT
CATTCTGACATACAGGGACCAAGTTTTAACAGTACAAATGGATGAAATTTTTAACAGAATGACC
AATTTGCTCTTTGATCTAAAGTATAGGGACTAATTTGCCCATTTTTTAGTAAAGGGGCCAAAAC
GCAATCTAACTCCTAGTACAATGGCCTCAACAGTACTTTTACCAAGAAATGATGGTCGAGACCT
GGAACATTAGCAACCAACACCCATCAACAGGCTCGACCAGTATGGTTAATGGAATTTATCTTCC
AACATTTTGAGTTATACAGTAATATTACCAAATATTCAACTTTCAGAGAAACCAACAAGTTCCG
GTATGAAATACTCCATTTCATTTTAGCTACATTTAGGTTTTGAATGAAGATTATTCAAGTTATT
GAGATATTCAGCATCAAGATTCACTGCCAAGACATCTATATTTTATCATAAAGGTACTAAACAG
ACCTCTTTCTGAAGCTTTACTGAGAATATTGTTTTTTCTCGAATTTGAGCTCTGAGAGCACGAA
GTTCATGCTCCATATCCATCACCTGAAAACATAACATGAATTGCAATGATCCAAAGCTGCCATT
ATATCGCAACCATATATATTTAACAATAAAACCCACTTACTTAACCACCCATGTAAATGTAGCC
AAGGAGCATAAATATAGTAATTGAAAACTTGAATATACTGAAAACAGTTGACTGTAATCTTTGA
AGCATAGCTAGCCTTAAATCATTAATGTGAGGCTATATTATCAAAAGCACATCCATATTTTCTA
CAACCGCATTTCAATTACAAGACCTACGAGACATACTAACGCACCTTACTAGGCTGATGCATGA
ATTTAATTCTTCTGGCCTCTTGAACTTCCTCTACTAGTTCCTCAACCTCCTGCAAGAGATAACA
TCAAAGGTGAATATAGTACATACCATTCAATACAAATATCAGTAGTTCTCACACTACTCTCGAT
ATTAGTTGGATGCAAGTACATAAAGAAAAATAAAGAGTCTAGGTACGTAAATTTTAGTTAAATA
CAAGCCACATTTCCCAACATGTGTACGAAGAGTGTTATTATTTAGTCTGAATTTACTGTCTAAA
ATAGCACCCGACTAGACACAGTGCCAAGTAATAATTAAGAGCAACTTAGAGCAGTTATGCTATG
TGCTATGTCTAGTTGGACTATTTACTTGGCATCAAAAGTAAGACCAAAAAAATTTTTCCATGTC
TAAAACCGGCAAACTAGGGAGGAAGTAAACCTGTGTCTTTTGAGAATTTTCTGGATTCTTTTCT
TGCTCATCGAGGGCCTCTCCGAATCGTTGCACAACAGCCCTAGCACTTTCAATTTCAGCACAAG
CAAAAGATTTTTCTTGATTGACCAACTTTTTAGCATCTTCAGAAGCCTGGAGATATAAAGGAAC
AAATTTGATTCGGTAAGACAATCCTTCAAAAAGAAAAGGCAAAACTGCAAGCTCCCGAAAAAGG
CTGATCTTCATTTGAGACATCAAGAGAAAGAAACACAATTCAAAACTCGACCGCGGTGAACTGA
CCTGTTTGAGGAAGTTTGCTAGTTTTTTCACTTCAAACTTCTCCTGAATCAATTCACCTTCTTT
TTGGGTCAATTTAACCGCCAATGCCTCGACCTACATGTTCCAAAAAGGATAGTTATAGCCAAAA
AAAACTCAAGGTGTACAATGTCTTGAGTGGTAAGAAATACCATCGAGATCATAGCAGAAAGAAA
ACATGACAATTTGGCATGAATATGAAGAATGCTTGATGTGGCTTTATGCTTTTTACATTATATC
ATAACAAGGGTTGCATAACTGGAACACTACACTTTGACCTGCTCGAAATTGTGAACAAAACCAT
AGCTACTTATGATAAGTATATGATGCATTAAGCTTCAAACAAAGAAAAACTTTAGTGAAATATA
AAAACGATAAGGTGAAACATGCTAACCATAGAGATAGCTTTCTCTACATCTTCTTTGTTTCTCC
CGGCCATTCGACCTCTCAAAGATTCTAAGGCGTCTCTAAGTTTCTTCAAAAGAACATGCCCCTC
CAAAGAAGCAACCTCTCTAAGCTTGGCCTAAATTACACGAAAACAAAGCATTATTCACCATATC
ATCCATTGTCAAGGAGACAGATACGGATATCATTATTAGGAAAATGCATCGAAGAAAAGAGTTA
AACCTCATCGGCAAATTTTGCAGCAGCGGTTAAGTTCTTGTCAAATTTACTAGCAAGGTCACGA
ACTGAGAGTCGCTTGTGCTGCTTGGACAATTGTGTTGTTTCCCTTTCAACAACCTCCTTTAGCG
ACGGACCGCTGTTATCCCCTCTTGGCTCCTCCAAAATCTGATTATCAGGTCCTAATTTGTACTT
CGGAAAGTGGTCCGAAGCAAAGCTCACATCAGCTGAAACAGCCACAATCGACTCTTTCAGCATT
GTTTCGTCGATATCGGGACTTATCTTTGTCATCTTTAGGTCAATTAGCT
Conservation Information
Conserved circRNAs NA
PMCS 0.437327322
Functional Information
Coding potential Y
Potential coding position 58185724-58185737(-)
Potential amino acid sequence MTKISPDIDETMLKESIVAVSADVSFASDHFPKYKLGPDNQILEEPRGDNSGPSLKEVVERETT
QLSKQHKRLSVRDLASKFDKNLTAAAKFADEAKLREVASLEGHVLLKKLRDALESLRGRMAGRN
KEDVEKAISMVEALAVKLTQKEGELIQEKFEVKKLANFLKQASEDAKKLVNQEKSFACAEIESA
RAVVQRFGEALDEQEKNPENSQKTQEVEELVEEVQEARRIKFMHQPSKVMDMEHELRALRAQIR
EKTIFSVKLQKELAINKRAEENKSCMFVLHGSETLGSCLQLKPRSDNAPSLSQSSIQWYRLSSD
ENRKEVISGANKTMYAPEPLDVGRILQADILSNGQKISVTTANPIDSAAGLASYVETLLRKSSS
EFNS*(-)
Sponge-miRNAs gra-miR7484e
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhao et al., 2017b