Plant Circular RNA Database

Detail information of Os08g0342400_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os08g0342400_circ_g.1
					
						ID in PlantcircBase
						osa_circ_036791
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr8: 15440249-15441988  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os08g0342400						
					
						Parent gene annotation
						
							Similar to aspartate kinase-homoserine dehydrogenase. (Os08t0342
400-01);Similar to Bifunctional aspartokinase/homoserine dehydro
genase 1, chloroplast precursor (AK-HD 1) (AK-HSDH 1) [Includes:
 Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC 1.1.1.
3)]. (Os08t0342400-02);Similar to Bifunctional aspartokinase/hom
oserine dehydrogenase 1, chloroplast precursor (AK-HD 1) (AK-HSD
H 1) [Includes: Aspartokinase (EC 2.7.2.4); Homoserine dehydroge
nase (EC 1.1.1.3)]. (Os08t0342400-03)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os08g0342400_circ_g.2 Os08g0342400_circ_g.3 Os08g0342400_circ_g.4 Os08g0342400_circ_g.5 Os08g0342400_circ_g.6 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os08t0342400-01:2
Os08t0342400-03:4
Os08t0342400-02:4

General Information
CircRNA Name	Os08g0342400_circ_g.1
ID in PlantcircBase	osa_circ_036791
Alias	NA
Organism	Oryza sativa
Position	chr8: 15440249-15441988 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os08g0342400
Parent gene annotation	Similar to aspartate kinase-homoserine dehydrogenase. (Os08t0342 400-01);Similar to Bifunctional aspartokinase/homoserine dehydro genase 1, chloroplast precursor (AK-HD 1) (AK-HSDH 1) [Includes: Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC 1.1.1. 3)]. (Os08t0342400-02);Similar to Bifunctional aspartokinase/hom oserine dehydrogenase 1, chloroplast precursor (AK-HD 1) (AK-HSD H 1) [Includes: Aspartokinase (EC 2.7.2.4); Homoserine dehydroge nase (EC 1.1.1.3)]. (Os08t0342400-03)
Parent gene strand	-
Alternative splicing	Os08g0342400_circ_g.2 Os08g0342400_circ_g.3 Os08g0342400_circ_g.4 Os08g0342400_circ_g.5 Os08g0342400_circ_g.6
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os08t0342400-01:2 Os08t0342400-03:4 Os08t0342400-02:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GACCGCGCAGAGTGCTAATGATAGGAAGGCCAGCACCAACAGTTGCTTCATAGAAGTAATGGGT
ATATGATGCACGTTGTAGAGTCCTAAGTTTCAAATAttctccggcagcttcagcatctttactc
tctcttgcccagtcctggtcaaaggatggtaacttttgcatgtattcatcagctgttgaacagg
actgcata

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 459
Transcript exons: 15440249-15440341,15440410-15440493,15441553-15441688,15
441843-15441988
TTCTCCGGCAGCTTCAGCATCTTTACTCTCTCTTGCCCAGTCCTGGTCAAAGGATGGTAACTTT
TGCATGTATTCATCAGCTGTTGAACAGGATCTCAATGCCTCCGGCACAAGACTCCTTACAGGAA
TATCAGAAAGCTCAAGCTTCAATCCAGATTCCCTAGCAAGAATTATTACCTTTCTGGCTACATC
AGTTCCAGACAGATCATCTCTTGGATCAGGTTCAGTGTATCCAGCCTCTTTTGCTTCAGAAACA
ACATCACTGAAAGCTCTTGTTCCTTCAAAATTGTTGAAAATGTAACTCAATGTTCCACTGAAGA
TCCCCTCAATACGCAATATCTTGTCACCTGTTTCCAGGAGACCGCGCAGAGTGCTAATGATAGG
AAGGCCAGCACCAACAGTTGCTTCATAGAAGTAATGGGTATATGATGCACGTTGTAGAGTCCTA
AGTTTCAAATA
						
					

						Genomic sequence
						
							TTCTCCGGCAGCTTCAGCATCTTTACTCTCTCTTGCCCAGTCCTGGTCAAAGGATGGTAACTTT
TGCATGTATTCATCAGCTGTTGAACAGGACTGCATAACAGAAATCTAATTAGAGTGTTAATATC
AAGGTATAGTCGTCAAGAAGGATGCAATCTTACTCTCAATGCCTCCGGCACAAGACTCCTTACA
GGAATATCAGAAAGCTCAAGCTTCAATCCAGATTCCCTAGCAAGAATTATTACCTGTTCCAAAA
GTAATTGATTGGCAAAAAAAAAAAAAACCAATTGAACAAAGAATAAATGTTCTCACAAAACAAG
TGTGAAATATTGATGTTCTTCCATATATTGTTTAAATTATAAAAAAAACTGAAAAGGATAGAGA
AGATAGCATAGTGAAAAACGAATTCAATATTGTGCACCTATCAATCATGCAAGTCTTTAACTCC
TGAGCAAATATTCATGAATTCATCCATCAAATATTCGGTGTATATTCTCTCTCTCAGTTCTCCT
TCCTCTTATAATTTTTACTCCAATCATCAGTACCCCAATCATTAACCCCTGAGCAAATCTAGCC
TTGGTTTCTGGCCAACTGAGAGGCTGCTTGTATAGCCAAGGCAAGGAGCAGCTAAGGCAGATAA
GAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAA
GAGAGATAAGGCACAAAGAGGAGAAAGGAAAAAAGGAGCCTGACAAGGTTTCTATAGCTGTCTT
CTGAAGCATGAAGGCACATGAAATTATTTTCCATCTCTTATGTCATGTGTTACTCAAAACCACC
AATAGAAGCAGCCTATGTGAAAAGGCACCATTTAGGGTGAAAACTAAACTCAAGTTACCAAGGT
CCATGAGTGAACCCTTTATATCTTGAAAACATAGACAGTCAATTTGTTCCTAGATAAGGAAGTT
GTGATAAATTAGGCTCAAGAGGAAACAAAAATATAATTTGTTCCAGTTCAGTACCTACACTGTG
GTTCCCTTTTATTTATTTTCAACAGTGTAACCTAAGTGCCATTCAAACAGATATGTACTGCCCC
GCAAAAAAAAAAGAAAAAAAAGAAAAGACAGATATACAACTGAAGAGTGTAAAGACTGAGGAGC
CTGGTAGAGTAGCCTGAAGCATGAAGGCACATAAAATTATTTTCCATCTCTTATGACGTGTTAC
TCAAAACCACCAATAGAAGCAGGTTATGCAGAGTAGTCAATAGGAAGTATAGTTATGTAGGTTG
ATAAGCCTATGATGGAAGAAGTACCTTTCTGGCTACATCAGTTCCAGACAGATCATCTCTTGGA
TCAGGTTCAGTGTATCCAGCCTCTTTTGCTTCAGAAACAACATCACTGAAAGCTCTTGTTCCTT
CAAAATTGTTGAAAATGTAACTCAATGTTCCACTGCAGTTGAACAATCAGCAGAGCATATTATC
AGGCAGCATCACACTAAATTCACTAAATAAAAGTATCTGTTAAGTATCTTACTCCACCCATGCG
TTATAATAGCATATGAAAATTGATATGCCACACAATGTAATCATGTGCTCAAACTGACCTGAAG
ATCCCCTCAATACGCAATATCTTGTCACCTGTTTCCAGGAGACCGCGCAGAGTGCTAATGATAG
GAAGGCCAGCACCAACAGTTGCTTCATAGAAGTAATGGGTATATGATGCACGTTGTAGAGTCCT
AAGTTTCAAATA
						
					

			
		

Sequences
Splice junction sequence	GACCGCGCAGAGTGCTAATGATAGGAAGGCCAGCACCAACAGTTGCTTCATAGAAGTAATGGGT ATATGATGCACGTTGTAGAGTCCTAAGTTTCAAATAttctccggcagcttcagcatctttactc tctcttgcccagtcctggtcaaaggatggtaacttttgcatgtattcatcagctgttgaacagg actgcata
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 459 Transcript exons: 15440249-15440341,15440410-15440493,15441553-15441688,15 441843-15441988 TTCTCCGGCAGCTTCAGCATCTTTACTCTCTCTTGCCCAGTCCTGGTCAAAGGATGGTAACTTT TGCATGTATTCATCAGCTGTTGAACAGGATCTCAATGCCTCCGGCACAAGACTCCTTACAGGAA TATCAGAAAGCTCAAGCTTCAATCCAGATTCCCTAGCAAGAATTATTACCTTTCTGGCTACATC AGTTCCAGACAGATCATCTCTTGGATCAGGTTCAGTGTATCCAGCCTCTTTTGCTTCAGAAACA ACATCACTGAAAGCTCTTGTTCCTTCAAAATTGTTGAAAATGTAACTCAATGTTCCACTGAAGA TCCCCTCAATACGCAATATCTTGTCACCTGTTTCCAGGAGACCGCGCAGAGTGCTAATGATAGG AAGGCCAGCACCAACAGTTGCTTCATAGAAGTAATGGGTATATGATGCACGTTGTAGAGTCCTA AGTTTCAAATA
Genomic sequence	TTCTCCGGCAGCTTCAGCATCTTTACTCTCTCTTGCCCAGTCCTGGTCAAAGGATGGTAACTTT TGCATGTATTCATCAGCTGTTGAACAGGACTGCATAACAGAAATCTAATTAGAGTGTTAATATC AAGGTATAGTCGTCAAGAAGGATGCAATCTTACTCTCAATGCCTCCGGCACAAGACTCCTTACA GGAATATCAGAAAGCTCAAGCTTCAATCCAGATTCCCTAGCAAGAATTATTACCTGTTCCAAAA GTAATTGATTGGCAAAAAAAAAAAAAACCAATTGAACAAAGAATAAATGTTCTCACAAAACAAG TGTGAAATATTGATGTTCTTCCATATATTGTTTAAATTATAAAAAAAACTGAAAAGGATAGAGA AGATAGCATAGTGAAAAACGAATTCAATATTGTGCACCTATCAATCATGCAAGTCTTTAACTCC TGAGCAAATATTCATGAATTCATCCATCAAATATTCGGTGTATATTCTCTCTCTCAGTTCTCCT TCCTCTTATAATTTTTACTCCAATCATCAGTACCCCAATCATTAACCCCTGAGCAAATCTAGCC TTGGTTTCTGGCCAACTGAGAGGCTGCTTGTATAGCCAAGGCAAGGAGCAGCTAAGGCAGATAA GAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAA GAGAGATAAGGCACAAAGAGGAGAAAGGAAAAAAGGAGCCTGACAAGGTTTCTATAGCTGTCTT CTGAAGCATGAAGGCACATGAAATTATTTTCCATCTCTTATGTCATGTGTTACTCAAAACCACC AATAGAAGCAGCCTATGTGAAAAGGCACCATTTAGGGTGAAAACTAAACTCAAGTTACCAAGGT CCATGAGTGAACCCTTTATATCTTGAAAACATAGACAGTCAATTTGTTCCTAGATAAGGAAGTT GTGATAAATTAGGCTCAAGAGGAAACAAAAATATAATTTGTTCCAGTTCAGTACCTACACTGTG GTTCCCTTTTATTTATTTTCAACAGTGTAACCTAAGTGCCATTCAAACAGATATGTACTGCCCC GCAAAAAAAAAAGAAAAAAAAGAAAAGACAGATATACAACTGAAGAGTGTAAAGACTGAGGAGC CTGGTAGAGTAGCCTGAAGCATGAAGGCACATAAAATTATTTTCCATCTCTTATGACGTGTTAC TCAAAACCACCAATAGAAGCAGGTTATGCAGAGTAGTCAATAGGAAGTATAGTTATGTAGGTTG ATAAGCCTATGATGGAAGAAGTACCTTTCTGGCTACATCAGTTCCAGACAGATCATCTCTTGGA TCAGGTTCAGTGTATCCAGCCTCTTTTGCTTCAGAAACAACATCACTGAAAGCTCTTGTTCCTT CAAAATTGTTGAAAATGTAACTCAATGTTCCACTGCAGTTGAACAATCAGCAGAGCATATTATC AGGCAGCATCACACTAAATTCACTAAATAAAAGTATCTGTTAAGTATCTTACTCCACCCATGCG TTATAATAGCATATGAAAATTGATATGCCACACAATGTAATCATGTGCTCAAACTGACCTGAAG ATCCCCTCAATACGCAATATCTTGTCACCTGTTTCCAGGAGACCGCGCAGAGTGCTAATGATAG GAAGGCCAGCACCAACAGTTGCTTCATAGAAGTAATGGGTATATGATGCACGTTGTAGAGTCCT AAGTTTCAAATA

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_017820 						
					
						PMCS
						0.238823405

Conservation Information
Conserved circRNAs	osi_circ_017820
PMCS	0.238823405

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							15440319-15440251(-)
15440327-15441984(-)
						
						Potential amino acid sequence
						
							MQKLPSFDQDWARESKDAEAAGEYLKLRTLQRASYTHYFYEATVGAGLPIISTLRGLLETGDKI
LRIEGIFSGTLSYIFNNFEGTRAFSDVVSEAKEAGYTEPDPRDDLSGTDVARKVIILARESGLK
LELSDIPVRSLVPEALRSCSTADEYMQKLPSFDQDWARESKDAEAAGEYLKLRTLQRASYTHYF
YEATVGAGLPIISTLRGLLETGDKILRIEGIFSGTLSYIFNNFEGTRAFSDVVSEAKEAGYTEP
DPRDDLSGTDVARKVIILARESGLKLELSDIPVRSLVPEALRSCSTADEYMQKLPSFDQDWARE
SKDAEAAGEYLKLRTLQRASYTHYFYEATVGAGLPIISTLRGLLETGDKILRIEGIFSGTLSYI
FNNFEGTRAFSDVVSEAKEAGYTEPDPRDDLSGTDVARKVIILARESGLKLELSDIPVRSLVPE
ALRSCSTADEYMQKLPSFDQDWARESKDAEAAGE(-)
MNTCKSYHPLTRTGQERVKMLKLPENI*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	15440319-15440251(-) 15440327-15441984(-)
Potential amino acid sequence	MQKLPSFDQDWARESKDAEAAGEYLKLRTLQRASYTHYFYEATVGAGLPIISTLRGLLETGDKI LRIEGIFSGTLSYIFNNFEGTRAFSDVVSEAKEAGYTEPDPRDDLSGTDVARKVIILARESGLK LELSDIPVRSLVPEALRSCSTADEYMQKLPSFDQDWARESKDAEAAGEYLKLRTLQRASYTHYF YEATVGAGLPIISTLRGLLETGDKILRIEGIFSGTLSYIFNNFEGTRAFSDVVSEAKEAGYTEP DPRDDLSGTDVARKVIILARESGLKLELSDIPVRSLVPEALRSCSTADEYMQKLPSFDQDWARE SKDAEAAGEYLKLRTLQRASYTHYFYEATVGAGLPIISTLRGLLETGDKILRIEGIFSGTLSYI FNNFEGTRAFSDVVSEAKEAGYTEPDPRDDLSGTDVARKVIILARESGLKLELSDIPVRSLVPE ALRSCSTADEYMQKLPSFDQDWARESKDAEAAGE(-) MNTCKSYHPLTRTGQERVKMLKLPENI*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os08g0342400_circ_g.1

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