Detail information of Os03g0738400_circ_g.19


General Information
CircRNA Name Os03g0738400_circ_g.19
ID in PlantcircBase osa_circ_021787
Alias NA
Organism Oryza sativa
Position chr3: 30301728-30302488  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0738400
Parent gene annotation Similar to Serine hydroxymethyltransferase, cytosolic (EC 2.1.2.
1) (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT).
(Os03t0738400-01);Similar to Serine hydroxymethyltransferase. (
Os03t0738400-02);Similar to Serine hydroxymethyltransferase. (Os
03t0738400-03)
Parent gene strand +
Alternative splicing Os03g0738400_circ_g.13 Os03g0738400_circ_g.14 Os03g0738400_circ_g.15 Os03g0738400_circ_g.16 Os03g0738400_circ_g.17 Os03g0738400_circ_g.18 Os03g0738400_circ_g.20 Os03g0738400_circ_g.21 Os03g0738400_circ_g.22 Os03g0738400_circ_g.23 Os03g0738400_circ_g.24 Os03g0738400_circ_g.25 Os03g0738400_circ_g.26 Os03g0738400_circ_g.27 Os03g0738400_circ_g.28 Os03g0738400_circ_g.29 Os03g0738400_circ_g.30 Os03g0738400_circ_g.31 Os03g0738400_circ_g.32 Os03g0738400_circ_g.33 Os03g0738400_circ_g.34 Os03g0738400_circ_g.35
Support reads 1
Tissues shoot, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0738400-01:4
Os03t0738400-03:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTCTTGGACTCTAAAAGGACTTTCTAACTTCCAGGCAACTACTCCGGAGTACAGAGCTTATCAA
GAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAGatggagaaaagtgccgttctttttaggc
caaagttgatcgttgcgggtgcaagtgcatatgcgcgtctttatgactatgaccgcatgcggaa
ggtgaatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATGGAGAAAAGTGCCGTTCTTTTTAGGCCAAAGTTGATCGTTGCGGGTGCAAGTGCATATGCGC
GTCTTTATGACTATGACCGCATGCGGAAGGTGAATTTTACTGCTCAATAGTGCATGCTGAATCT
TCACCTTCTGTAATCAGTCAAATAATTCACTTGTTATGCAATCTGCAGGTTTGTGACAAGCAGA
AGGCAATACTTCTAGCAGATATGGCACATATCAGTGGGCTTGTCGCAGCTGGTGTTGTTCCATC
TCCTTTTGATTATGCAGATGTAGTGACTACCACTACTCACAAGTCACTCCGTGGACCACGTGGA
GCCATGATCTTTTACAGGAAGGGGGTGAAAGGAGTAAACAAGCAAGGCAAAGAGGTATATACTT
GAGCAGAACAATAGCAAGATAGTAGCGTAGGGTGTTGGTACTGTTTCTTCTCCATCCTGTGACT
CTGTGAGCTTCAAAAAAATAAAAATGCCTAATGACCCTCTACCGTCTAGGTTATGTATGACTTT
GAGGACAAGATCAATGCTGCTGTCTTCCCAGGTCTGCAAGGTGGACCACATAATCATACCATTA
CTGGCTTAGCTGTTGCGCTTAAGCAGGTCTGTAGCACTTCTGATCCCTGATGTTTTATATTTTA
TAGATCACATTGTTTGCCTTTGTCTTGGACTCTAAAAGGACTTTCTAACTTCCAGGCAACTACT
CCGGAGTACAGAGCTTATCAAGAGCAAGTTATGAGTAACTGTGCAAAATTTGCACAG
Conservation Information
Conserved circRNAs NA
PMCS 0.241576741
Functional Information
Coding potential Y
Potential coding position 30301729-30302485(+)
Potential amino acid sequence MEKSAVLFRPKLIVAGASAYARLYDYDRMRKVCDKQKAILLADMAHISGLVAAGVVPSPFDYAD
VVTTTTHKSLRGPRGAMIFYRKGVKGVNKQGKEVMYDFEDKINAAVFPGLQGGPHNHTITGLAV
ALKQATTPEYRAYQEQVMSNCAKFAQMEKSAVLFRPKLIVAGASAYARLYDYDRMRKVCDKQKA
ILLADMAHISGLVAAGVVPSPFDYADVVTTTTHKSLRGPRGAMIFYRKGVKGVNKQGKEVMYDF
EDKINAAVFPGLQGGPHNHTITGLAVALKQATTPEYRAYQEQVMSNCAKFAQMEKSAVLFRPKL
IVAGASAYARLYDYDRMRKVCDKQKAILLADMAHISGLVAAGVVPSPFDYADVVTTTTHKSLRG
PRGAMIFYRKGVKGVNKQGKEVMYDFEDKINAAVFPGLQGGPHNHTITGLAVALKQATTPEYRA
YQEQVMSNCAKFAQMEKSAVLFRPKLIVAGASAYARLYDYDRMRKVCDKQKAILLADMAHISGL
VAAGVVPSPFDYADVVTTTTHKSLRGPRGAMIFYRKGVKGVNKQGKEVMYDFEDKINAAVFPGL
QGGPHNHTITGLAVALKQATTPEYRAYQEQVMSNCAKFAQ(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017