Detail information of BGIOSGA019322_circ_g.4


General Information
CircRNA Name BGIOSGA019322_circ_g.4
ID in PlantcircBase osi_circ_006024
Alias 5:6181386|6184334
Organism Oryza sativa ssp. indica
Position chr5: 6181386-6184334  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA019322
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA019322_circ_g.2 BGIOSGA019322_circ_g.3 BGIOSGA019322_circ_g.5 BGIOSGA019322_circ_g.6
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA019322-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATGTTGTGCATCGTTTCAAGTGCTCTGTTGAACCTCTCGAAATTGGTGTTGTGCTATCAGGGA
GGCTGTGGTCTTCAAGCCAAGCAATCTTCCCGAAAGgtgatatatggtgctgatctggagactg
gaactttcggcagtggttttccaaaattatctcctgagacaaaatctgatgctgaggataaata
tgcacaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGATATATGGTGCTGATCTGGAGACTGGAACTTTCGGCAGTGGTTTTCCAAAATTATCTCCTG
AGACAAAATCTGATGCTGAGGATAAATATGCACAATCTGGTTGGAATCTAAATAACTTGCCTAG
ACTACAAGGTTCAGTTCTTTCTTTCGAGGGCGGTGACATTTCTGGTGTTCTAGTGCCTTGGGTG
TATGTTGGCATGTGTTTTTCATCATTCTGCTGGGTAAGATGCTTGTGATATTGCTTGTCATGAC
TTTCTGTTCTAGTTGTGCTTCTTGATTCTTTTTTTTCCCGAAACTATCCAACCTGAGATTTGTT
ACACTCAATTGTGTTATGTCTACTAACAGCATGTTGAAGACCATCATTTATACTCACTAAACTA
CATGCATTGGGGTGCCCCAAAGTTGTGGTATGGAGTTCCAGGAAAGGATGCTGTGAATTTGGAA
TCTGCAATGAGGAAACATCTACCTGAATTATTTGAGGAGCAACCTGATTTGCTACACAACCTTG
TGAGTATCTTGATTGGCAGTTTTCTGTTTGTGCCCAGGAAGGAAGCCTTTTGTATCTAGTAACA
ACTAATGCTCGATAGACTCTGTGATAGCAGTGAATACTGGGAGCTACTTATAATCATGCCACAT
GAAATGCATTTTTGGAAGTTATAAGAAATAGATAATTTTCTAACCTTCTGTACAAAAGAAGGTA
TATTTTTGTAACATCATTTTCCTACTGCATTATTGTTATGGTAGTATGCCAGCAACCAATAACT
TTTCAATTCTCTCTATTTTCCAATCACTACTAAATCATCTAACTTTAGACATCTTTATAACGCA
AGACTCAGCAAGAGCTCACCATGTGTAAAACAGCACCAACACATTAACTATTCATGTGGTAGTA
AAGAAATGGTTTGTCTGAGTGTCTAAAGCATTATGTTCTATTCTTTGAATTTAGACATAAGATT
TTTAAAAAAAATGATGTGAGCACTTATATATGGGTTGTGTTTGCTATGATGTGTATGAGCAGCA
TTTTTATGTGTTTTGTTATGACAACCTCTACCGCAGGTTACCCAGTTTTCACCATCGCTGCTGA
AATCTGAAGGAGTACATGTATACCGTTGTGTTCAGCATGAGGGCGAGTTTGTCTTGACATTCCC
AAGGGCGTACCATGCTGGTTTCAATTGTGGCTTCAATTGTGCCGAAGCTGTTAATGTGGCTCCT
ATTGATTGGTTACCGATTGGACATAATGCTGTAGAGCTTTATCGTGAGCAAGCTAGGAAAATAA
CCATTTCTCATGATAAGTTGTTGTTGGGGGCTGCAAGAGAAGCAATAAGAGCTCAGTGGGATAT
CCTATTCCTCAAGAGGAATACTGCTGATAATATGAGGTGGAAGAGTATATGCGGAGCTGATAGC
ACTATATTCAAGGCTCTTAAGGTAAAGTCCAATTAAAATATGTGTTGTATTGTTTGTTTAAGAA
CTCAATGGAAGCTCATACTTAAAATTCTCTGTTTAGGCACGAATTGAGACAGAGTTGGTGCAAA
GGAAAACTCTAGGTGTTCCAGCTCAATCAAGGAAAATGGATGCTGAATTCGATTCCATTGATAG
GGAATGTGCCTTGTGCTACTATGATTTACATCTTTCTGCTTCTGGCTGTCCATGCTGCCCAGAG
AAATATGCTTGCCTTGTACATGCAAAGCAACTTTGCTCATGTGACTGGGACAAAAGGTTTTTCC
TATTCCGCTATGATGTCAATGAGCTAAATATCTTAGCTGATGCTTTAGGGGGGAAATTAAGTGC
CATTCATAGATGGGGCGTCTCTGATCTTGGATTAAGTTTGAGTTCATGTGTCAAACGAGAAAAG
GTCCAAGATTCCAAGACTGTTCGCAGATTAACTGATGGTCCAAGAAGGTCTTACATGTCACAGG
CATCAGCAGTATCCTTGGTTTCTTCTTCTACTTCCAATGAACAGAAAGATGAAGGAAATAAGAT
CATGAAGATAGCTAGCCCACAGACAAATAATGTGTGCCCTTCTGTCGAGCAAAGGAAATCAGAG
AATATTTCACCATTGAAGGAGCCATGTGTAAGGAATGAGTTGTCATGTACAACAAATTCTGATA
GTAACGGATTGCAATATAATGGAGGACTTGGAGGCCATAAAGGATCTGCACCAGGCTTGCCAGT
TTCTTCTAGCCCATCATTTTCTTCCAACGTTGCAACAAGGCCCATTAGTACTTCAAGTGTATCC
ATGAAAATTGTGCAAGGCTTGGTGGCATCTAAAAGTTGTATACAAGCTTCCTCTCGAACTGGAG
ACAGTAGATCATTGCTTGGTGAGCATCATAACAGATCACCGGCAATGATTCATGATGGAACCAA
CATGAAGTCCAGTTTGGAAAGCTCAAACAATTCTTGCAGGTTGATTGCATCTGACTATAATGCA
ACTCCGTGTCATTCATCCAAGGATCAGGTATTAGTAACACCAGGGACTAATGCCTCAGTAGTGA
CTCTGAAAGATAGCAGCCAGGTCCATAGTGCGTCAAGTCAGCAGTTTGTCAGAACTGGCCCATG
GACACAAAGTGCTTCTCATGAAGCATCATCACCTAGTACCTCTGCTTTGAAGCCTTCTTTAGAT
CCCCCTGCCATGAAAAATCTGTATGGGGGTTTTACTCAAGGCAGTGCCCATCCTGGACCTCCAA
GTTTCAGTAATCAGCAACCAAATGATGGGCGTCTTCAAAGAACATCTGAATCTCTACCAGGTGT
GGAAGCTAGAGCTAGGGGACATCCAACTGTCACGGCACAGCCTGCACTAGAAATTCACAGCAGG
AATGGAGGTGCACAGAAGGGTCCTCGCATAGCCAATGTTGTGCATCGTTTCAAGTGCTCTGTTG
AACCTCTCGAAATTGGTGTTGTGCTATCAGGGAGGCTGTGGTCTTCAAGCCAAGCAATCTTCCC
GAAAG
Conservation Information
Conserved circRNAs osa_circ_026933*
PMCS
Functional Information
Coding potential Y
Potential coding position 6181590-6184312(-)
6181588-6181399(+)
6184237-6181399(+)
Potential amino acid sequence MPTYTQGTRTPEMSPPSKERTEPCSLGKLFRFQPDCAYLSSASDFVSGDNFGKPLPKVPVSRSA
PYITFREDCLA*(-)
MCFSSFCWHVEDHHLYSLNYMHWGAPKLWYGVPGKDAVNLESAMRKHLPELFEEQPDLLHNLVT
QFSPSLLKSEGVHVYRCVQHEGEFVLTFPRAYHAGFNCGFNCAEAVNVAPIDWLPIGHNAVELY
REQARKITISHDKLLLGAAREAIRAQWDILFLKRNTADNMRWKSICGADSTIFKALKARIETEL
VQRKTLGVPAQSRKMDAEFDSIDRECALCYYDLHLSASGCPCCPEKYACLVHAKQLCSCDWDKR
FFLFRYDVNELNILADALGGKLSAIHRWGVSDLGLSLSSCVKREKVQDSKTVRRLTDGPRRSYM
SQASAVSLVSSSTSNEQKDEGNKIMKIASPQTNNVCPSVEQRKSENISPLKEPCVRNELSCTTN
SDSNGLQYNGGLGGHKGSAPGLPVSSSPSFSSNVATRPISTSSVSMKIVQGLVASKSCIQASSR
TGDSRSLLGEHHNRSPAMIHDGTNMKSSLESSNNSCRLIASDYNATPCHSSKDQVLVTPGTNAS
VVTLKDSSQVHSASSQQFVRTGPWTQSASHEASSPSTSALKPSLDPPAMKNLYGGFTQGSAHPG
PPSFSNQQPNDGRLQRTSESLPGVEARARGHPTVTAQPALEIHSRNGGAQKGPRIANVVHRFKC
SVEPLEIGVVLSGRLWSSSQAIFPKGDIWC*(+)
MLCIVSSALLNLSKLVLCYQGGCGLQAKQSSRKVIYGADLETGTFGSGFPKLSPETKSDAEDKY
AQSGWNLNNLPRLQGSVLSFEGGDISGVLVPWVYVGMCFSSFCWHVEDHHLYSLNYMHWGAPKL
WYGVPGKDAVNLESAMRKHLPELFEEQPDLLHNLVTQFSPSLLKSEGVHVYRCVQHEGEFVLTF
PRAYHAGFNCGFNCAEAVNVAPIDWLPIGHNAVELYREQARKITISHDKLLLGAAREAIRAQWD
ILFLKRNTADNMRWKSICGADSTIFKALKARIETELVQRKTLGVPAQSRKMDAEFDSIDRECAL
CYYDLHLSASGCPCCPEKYACLVHAKQLCSCDWDKRFFLFRYDVNELNILADALGGKLSAIHRW
GVSDLGLSLSSCVKREKVQDSKTVRRLTDGPRRSYMSQASAVSLVSSSTSNEQKDEGNKIMKIA
SPQTNNVCPSVEQRKSENISPLKEPCVRNELSCTTNSDSNGLQYNGGLGGHKGSAPGLPVSSSP
SFSSNVATRPISTSSVSMKIVQGLVASKSCIQASSRTGDSRSLLGEHHNRSPAMIHDGTNMKSS
LESSNNSCRLIASDYNATPCHSSKDQVLVTPGTNASVVTLKDSSQVHSASSQQFVRTGPWTQSA
SHEASSPSTSALKPSLDPPAMKNLYGGFTQGSAHPGPPSFSNQQPNDGRLQRTSESLPGVEARA
RGHPTVTAQPALEIHSRNGGAQKGPRIANVVHRFKCSVEPLEIGVVLSGRLWSSSQAIFPKGDI
WC*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021