Plant Circular RNA Database

Detail information of Os05g0196500_circ_g.7

			
						 General Information
					
						CircRNA Name
						Os05g0196500_circ_g.7
					
						ID in PlantcircBase
						osa_circ_026933
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr5: 5942358-5945306  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os05g0196500						
					
						Parent gene annotation
						
							H3K4-specific demethylase, JmjC domain-containing protein, Contr
ol of stem elongation, Control of transposon activity, Panicle d
evelopment (Os05t0196500-01)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os05g0196500_circ_g.1 Os05g0196500_circ_g.2 Os05g0196500_circ_g.3 Os05g0196500_circ_g.4 Os05g0196500_circ_g.5 Os05g0196500_circ_g.6 Os05g0196500_circ_g.8 Os05g0196500_circ_g.9 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os05t0196500-01:4

General Information
CircRNA Name	Os05g0196500_circ_g.7
ID in PlantcircBase	osa_circ_026933
Alias	NA
Organism	Oryza sativa
Position	chr5: 5942358-5945306 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os05g0196500
Parent gene annotation	H3K4-specific demethylase, JmjC domain-containing protein, Contr ol of stem elongation, Control of transposon activity, Panicle d evelopment (Os05t0196500-01)
Parent gene strand	+
Alternative splicing	Os05g0196500_circ_g.1 Os05g0196500_circ_g.2 Os05g0196500_circ_g.3 Os05g0196500_circ_g.4 Os05g0196500_circ_g.5 Os05g0196500_circ_g.6 Os05g0196500_circ_g.8 Os05g0196500_circ_g.9
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os05t0196500-01:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AATGTTGTGCATCGTTTCAAGTGCTCTGTTGAACCTCTCGAAATTGGTGTTGTGCTATCAGGGA
GGCTGTGGTCTTCAAGCCAAGCAATCTTCCCGAAAGgtgatatatggtgctgatctggagactg
gaactttcggcagtggttttccaaaattatctcctgagacaaaatctgatgctgaggataaata
tgcacaat

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 2197
Transcript exons: 5942358-5942582,5942707-5942868,5943418-5943786,5943866-
5945306
GTGATATATGGTGCTGATCTGGAGACTGGAACTTTCGGCAGTGGTTTTCCAAAATTATCTCCTG
AGACAAAATCTGATGCTGAGGATAAATATGCACAATCTGGTTGGAATCTAAATAACTTGCCTAG
ACTACAAGGTTCAGTTCTTTCTTTCGAGGGCGGTGACATTTCTGGTGTTCTAGTGCCTTGGGTG
TATGTTGGCATGTGTTTTTCATCATTCTGCTGGCATGTTGAAGACCATCATTTATACTCACTAA
ACTACATGCATTGGGGTGCCCCAAAGTTGTGGTATGGAGTTCCAGGAAAGGATGCTGTGAATTT
GGAATCTGCAATGAGGAAACATCTACCTGAATTATTTGAGGAGCAACCTGATTTGCTACACAAC
CTTGTTACCCAGTTTTCACCATCGCTGCTGAAATCTGAAGGAGTACATGTATACCGTTGTGTTC
AGCATGAGGGCGAGTTTGTCTTGACATTCCCAAGGGCGTACCATGCTGGTTTCAATTGTGGCTT
CAATTGTGCCGAAGCTGTTAATGTGGCTCCTATTGATTGGTTACCGATTGGACATAATGCTGTA
GAGCTTTATCGTGAGCAAGCTAGGAAAATAACCATTTCTCATGATAAGTTGTTGTTGGGGGCTG
CAAGAGAAGCAATAAGAGCTCAGTGGGATATCCTATTCCTCAAGAGGAATACTGCTGATAATAT
GAGGTGGAAGAGTATATGCGGAGCTGATAGCACTATATTCAAGGCTCTTAAGGCACGAATTGAG
ACAGAGTTGGTGCAAAGGAAAACTCTAGGTGTTCCAGCTCAATCAAGGAAAATGGATGCTGAAT
TCGATTCCATTGATAGGGAATGTGCCTTGTGCTACTATGATTTACATCTTTCTGCTTCTGGCTG
TCCATGCTGCCCAGAGAAATATGCTTGCCTTGTACATGCAAAGCAACTTTGCTCATGTGACTGG
GACAAAAGGTTTTTCCTATTCCGCTATGATGTCAATGAGCTAAATATCTTAGCTGATGCTTTAG
GGGGGAAATTAAGTGCCATTCATAGATGGGGCGTCTCTGATCTTGGATTAAGTTTGAGTTCATG
TGTCAAACGAGAAAAGGTCCAAGATTCCAAGACTGTTCGCAGATTAACTGATGGTCCAAGAAGG
TCTTACATGTCACAGGCATCAGCAGTATCCTTGGTTTCTTCTTCTACTTCCAATGAACAGAAAG
ATGAAGGAAATAAGATCATGAAGATAGCTAGCCCACAGACAAATAATGTGTGCCCTTCTGTCGA
GCAAAGGAAATCAGAGAATATTTCACCATTGAAGGAGCCATGTGTAAGGAATGAGTTGTCATGT
ACAACAAATTCTGATAGTAACGGATTGCAATATAATGGAGGACTTGGAGGCCATAAAGGATCTG
CACCAGGCTTGCCAGTTTCTTCTAGCCCATCATTTTCTTCCAACGTTGCAACAAGGCCCATTAG
TACTTCAAGTGTATCCATGAAAATTGTGCAAGGCTTGGTGGCATCTAAAAGTTGTATACAAGCT
TCCTCTCGAACTGGAGACAGTAGATCATTGCTTGGTGAGCATCATAACAGATCACCGGCAATGA
TTCATGATGGAACCAACATGAAGTCCAGTTTGGAAAGCTCAAACAATTCTTGCAGGTTGATTGC
ATCTGACTATAATGCAACTCCGTGTCATTCATCCAAGGATCAGGTATTAGTAACACCAGGGACT
AATGCCTCAGTAGTGACTCTGAAAGATAGCAGCCAGGTCCATAGTGCGTCAAGTCAGCAGTTTG
TCAGAACTGGCCCATGGACACAAAGTGCTTCTCATGAAGCATCATCACCTAGTACCTCTGCTTT
GAAGCCTTCTTTAGATCCCCCTGCCATGAAAAATCTGTATGGGGGTTTTACTCAAGGCAGTGCC
CATCCTGGACCTCCAAGTTTCAGTAATCAGCAACCAAATGATGGGCGTCTTCAAAGAACATCTG
AATCTCTACCAGGTGTGGAAGCTAGAGCTAGGGGACATCCAACTGTCACGGCACAGCCTGCACT
AGAAATTCACAGCAGGAATGGAGGTGCACAGAAGGGTCCTCGCATAGCCAATGTTGTGCATCGT
TTCAAGTGCTCTGTTGAACCTCTCGAAATTGGTGTTGTGCTATCAGGGAGGCTGTGGTCTTCAA
GCCAAGCAATCTTCCCGAAAG
						
					

						Genomic sequence
						
							GTGATATATGGTGCTGATCTGGAGACTGGAACTTTCGGCAGTGGTTTTCCAAAATTATCTCCTG
AGACAAAATCTGATGCTGAGGATAAATATGCACAATCTGGTTGGAATCTAAATAACTTGCCTAG
ACTACAAGGTTCAGTTCTTTCTTTCGAGGGCGGTGACATTTCTGGTGTTCTAGTGCCTTGGGTG
TATGTTGGCATGTGTTTTTCATCATTCTGCTGGGTAAGATGCTTGTGATATTGCTTGTCATGAC
TTTCTGTTCTAGTTGTGCTTCTTGATTCTTTTTTTTCCCGAAACTATCCAACCTGAGATTTGTT
ACACTCAATTGTGTTATGTCTACTAACAGCATGTTGAAGACCATCATTTATACTCACTAAACTA
CATGCATTGGGGTGCCCCAAAGTTGTGGTATGGAGTTCCAGGAAAGGATGCTGTGAATTTGGAA
TCTGCAATGAGGAAACATCTACCTGAATTATTTGAGGAGCAACCTGATTTGCTACACAACCTTG
TGAGTATCTTGATTGGCAGTTTTCTGTTTGTGCCCAGGAAGGAAGCCTTTTGTATCTAGTAACA
ACTAATGCTCGATAGACTCTGTGATAGCAGTGAATACTGGGAGCTACTTATAATCATGCCACAT
GAAATGCATTTTTGGAAGTTATAAGAAATAGATAATTTTCTAACCTTCTGTACAAAAGAAGGTA
TATTTTTGTAACATCATTTTCCTACTGCATTATTGTTATGGTAGTATGCCAGCAACCAATAACT
TTTCAATTCTCTCTATTTTCCAATCACTACTAAATCATCTAACTTTAGACATCTTTATAACGCA
AGACTCAGCAAGAGCTCACCATGTGTAAAACAGCACCAACACATTAACTATTCATGTGGTAGTA
AAGAAATGGTTTGTCTGAGTGTCTAAAGCATTATGTTCTATTCTTTGAATTTAGACATAAGATT
TTTAAAAAAAATGATGTGAGCACTTATATATGGGTTGTGTTTGCTATGATGTGTATGAGCAGCA
TTTTTATGTGTTTTGTTATGACAACCTCTACCGCAGGTTACCCAGTTTTCACCATCGCTGCTGA
AATCTGAAGGAGTACATGTATACCGTTGTGTTCAGCATGAGGGCGAGTTTGTCTTGACATTCCC
AAGGGCGTACCATGCTGGTTTCAATTGTGGCTTCAATTGTGCCGAAGCTGTTAATGTGGCTCCT
ATTGATTGGTTACCGATTGGACATAATGCTGTAGAGCTTTATCGTGAGCAAGCTAGGAAAATAA
CCATTTCTCATGATAAGTTGTTGTTGGGGGCTGCAAGAGAAGCAATAAGAGCTCAGTGGGATAT
CCTATTCCTCAAGAGGAATACTGCTGATAATATGAGGTGGAAGAGTATATGCGGAGCTGATAGC
ACTATATTCAAGGCTCTTAAGGTAAAGTCCAATTAAAATATGTGTTGTATTGTTTGTTTAAGAA
CTCAATGGAAGCTCATACTTAAAATTCTCTGTTTAGGCACGAATTGAGACAGAGTTGGTGCAAA
GGAAAACTCTAGGTGTTCCAGCTCAATCAAGGAAAATGGATGCTGAATTCGATTCCATTGATAG
GGAATGTGCCTTGTGCTACTATGATTTACATCTTTCTGCTTCTGGCTGTCCATGCTGCCCAGAG
AAATATGCTTGCCTTGTACATGCAAAGCAACTTTGCTCATGTGACTGGGACAAAAGGTTTTTCC
TATTCCGCTATGATGTCAATGAGCTAAATATCTTAGCTGATGCTTTAGGGGGGAAATTAAGTGC
CATTCATAGATGGGGCGTCTCTGATCTTGGATTAAGTTTGAGTTCATGTGTCAAACGAGAAAAG
GTCCAAGATTCCAAGACTGTTCGCAGATTAACTGATGGTCCAAGAAGGTCTTACATGTCACAGG
CATCAGCAGTATCCTTGGTTTCTTCTTCTACTTCCAATGAACAGAAAGATGAAGGAAATAAGAT
CATGAAGATAGCTAGCCCACAGACAAATAATGTGTGCCCTTCTGTCGAGCAAAGGAAATCAGAG
AATATTTCACCATTGAAGGAGCCATGTGTAAGGAATGAGTTGTCATGTACAACAAATTCTGATA
GTAACGGATTGCAATATAATGGAGGACTTGGAGGCCATAAAGGATCTGCACCAGGCTTGCCAGT
TTCTTCTAGCCCATCATTTTCTTCCAACGTTGCAACAAGGCCCATTAGTACTTCAAGTGTATCC
ATGAAAATTGTGCAAGGCTTGGTGGCATCTAAAAGTTGTATACAAGCTTCCTCTCGAACTGGAG
ACAGTAGATCATTGCTTGGTGAGCATCATAACAGATCACCGGCAATGATTCATGATGGAACCAA
CATGAAGTCCAGTTTGGAAAGCTCAAACAATTCTTGCAGGTTGATTGCATCTGACTATAATGCA
ACTCCGTGTCATTCATCCAAGGATCAGGTATTAGTAACACCAGGGACTAATGCCTCAGTAGTGA
CTCTGAAAGATAGCAGCCAGGTCCATAGTGCGTCAAGTCAGCAGTTTGTCAGAACTGGCCCATG
GACACAAAGTGCTTCTCATGAAGCATCATCACCTAGTACCTCTGCTTTGAAGCCTTCTTTAGAT
CCCCCTGCCATGAAAAATCTGTATGGGGGTTTTACTCAAGGCAGTGCCCATCCTGGACCTCCAA
GTTTCAGTAATCAGCAACCAAATGATGGGCGTCTTCAAAGAACATCTGAATCTCTACCAGGTGT
GGAAGCTAGAGCTAGGGGACATCCAACTGTCACGGCACAGCCTGCACTAGAAATTCACAGCAGG
AATGGAGGTGCACAGAAGGGTCCTCGCATAGCCAATGTTGTGCATCGTTTCAAGTGCTCTGTTG
AACCTCTCGAAATTGGTGTTGTGCTATCAGGGAGGCTGTGGTCTTCAAGCCAAGCAATCTTCCC
GAAAG
						
					

			
		

Sequences
Splice junction sequence	AATGTTGTGCATCGTTTCAAGTGCTCTGTTGAACCTCTCGAAATTGGTGTTGTGCTATCAGGGA GGCTGTGGTCTTCAAGCCAAGCAATCTTCCCGAAAGgtgatatatggtgctgatctggagactg gaactttcggcagtggttttccaaaattatctcctgagacaaaatctgatgctgaggataaata tgcacaat
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 2197 Transcript exons: 5942358-5942582,5942707-5942868,5943418-5943786,5943866- 5945306 GTGATATATGGTGCTGATCTGGAGACTGGAACTTTCGGCAGTGGTTTTCCAAAATTATCTCCTG AGACAAAATCTGATGCTGAGGATAAATATGCACAATCTGGTTGGAATCTAAATAACTTGCCTAG ACTACAAGGTTCAGTTCTTTCTTTCGAGGGCGGTGACATTTCTGGTGTTCTAGTGCCTTGGGTG TATGTTGGCATGTGTTTTTCATCATTCTGCTGGCATGTTGAAGACCATCATTTATACTCACTAA ACTACATGCATTGGGGTGCCCCAAAGTTGTGGTATGGAGTTCCAGGAAAGGATGCTGTGAATTT GGAATCTGCAATGAGGAAACATCTACCTGAATTATTTGAGGAGCAACCTGATTTGCTACACAAC CTTGTTACCCAGTTTTCACCATCGCTGCTGAAATCTGAAGGAGTACATGTATACCGTTGTGTTC AGCATGAGGGCGAGTTTGTCTTGACATTCCCAAGGGCGTACCATGCTGGTTTCAATTGTGGCTT CAATTGTGCCGAAGCTGTTAATGTGGCTCCTATTGATTGGTTACCGATTGGACATAATGCTGTA GAGCTTTATCGTGAGCAAGCTAGGAAAATAACCATTTCTCATGATAAGTTGTTGTTGGGGGCTG CAAGAGAAGCAATAAGAGCTCAGTGGGATATCCTATTCCTCAAGAGGAATACTGCTGATAATAT GAGGTGGAAGAGTATATGCGGAGCTGATAGCACTATATTCAAGGCTCTTAAGGCACGAATTGAG ACAGAGTTGGTGCAAAGGAAAACTCTAGGTGTTCCAGCTCAATCAAGGAAAATGGATGCTGAAT TCGATTCCATTGATAGGGAATGTGCCTTGTGCTACTATGATTTACATCTTTCTGCTTCTGGCTG TCCATGCTGCCCAGAGAAATATGCTTGCCTTGTACATGCAAAGCAACTTTGCTCATGTGACTGG GACAAAAGGTTTTTCCTATTCCGCTATGATGTCAATGAGCTAAATATCTTAGCTGATGCTTTAG GGGGGAAATTAAGTGCCATTCATAGATGGGGCGTCTCTGATCTTGGATTAAGTTTGAGTTCATG TGTCAAACGAGAAAAGGTCCAAGATTCCAAGACTGTTCGCAGATTAACTGATGGTCCAAGAAGG TCTTACATGTCACAGGCATCAGCAGTATCCTTGGTTTCTTCTTCTACTTCCAATGAACAGAAAG ATGAAGGAAATAAGATCATGAAGATAGCTAGCCCACAGACAAATAATGTGTGCCCTTCTGTCGA GCAAAGGAAATCAGAGAATATTTCACCATTGAAGGAGCCATGTGTAAGGAATGAGTTGTCATGT ACAACAAATTCTGATAGTAACGGATTGCAATATAATGGAGGACTTGGAGGCCATAAAGGATCTG CACCAGGCTTGCCAGTTTCTTCTAGCCCATCATTTTCTTCCAACGTTGCAACAAGGCCCATTAG TACTTCAAGTGTATCCATGAAAATTGTGCAAGGCTTGGTGGCATCTAAAAGTTGTATACAAGCT TCCTCTCGAACTGGAGACAGTAGATCATTGCTTGGTGAGCATCATAACAGATCACCGGCAATGA TTCATGATGGAACCAACATGAAGTCCAGTTTGGAAAGCTCAAACAATTCTTGCAGGTTGATTGC ATCTGACTATAATGCAACTCCGTGTCATTCATCCAAGGATCAGGTATTAGTAACACCAGGGACT AATGCCTCAGTAGTGACTCTGAAAGATAGCAGCCAGGTCCATAGTGCGTCAAGTCAGCAGTTTG TCAGAACTGGCCCATGGACACAAAGTGCTTCTCATGAAGCATCATCACCTAGTACCTCTGCTTT GAAGCCTTCTTTAGATCCCCCTGCCATGAAAAATCTGTATGGGGGTTTTACTCAAGGCAGTGCC CATCCTGGACCTCCAAGTTTCAGTAATCAGCAACCAAATGATGGGCGTCTTCAAAGAACATCTG AATCTCTACCAGGTGTGGAAGCTAGAGCTAGGGGACATCCAACTGTCACGGCACAGCCTGCACT AGAAATTCACAGCAGGAATGGAGGTGCACAGAAGGGTCCTCGCATAGCCAATGTTGTGCATCGT TTCAAGTGCTCTGTTGAACCTCTCGAAATTGGTGTTGTGCTATCAGGGAGGCTGTGGTCTTCAA GCCAAGCAATCTTCCCGAAAG
Genomic sequence	GTGATATATGGTGCTGATCTGGAGACTGGAACTTTCGGCAGTGGTTTTCCAAAATTATCTCCTG AGACAAAATCTGATGCTGAGGATAAATATGCACAATCTGGTTGGAATCTAAATAACTTGCCTAG ACTACAAGGTTCAGTTCTTTCTTTCGAGGGCGGTGACATTTCTGGTGTTCTAGTGCCTTGGGTG TATGTTGGCATGTGTTTTTCATCATTCTGCTGGGTAAGATGCTTGTGATATTGCTTGTCATGAC TTTCTGTTCTAGTTGTGCTTCTTGATTCTTTTTTTTCCCGAAACTATCCAACCTGAGATTTGTT ACACTCAATTGTGTTATGTCTACTAACAGCATGTTGAAGACCATCATTTATACTCACTAAACTA CATGCATTGGGGTGCCCCAAAGTTGTGGTATGGAGTTCCAGGAAAGGATGCTGTGAATTTGGAA TCTGCAATGAGGAAACATCTACCTGAATTATTTGAGGAGCAACCTGATTTGCTACACAACCTTG TGAGTATCTTGATTGGCAGTTTTCTGTTTGTGCCCAGGAAGGAAGCCTTTTGTATCTAGTAACA ACTAATGCTCGATAGACTCTGTGATAGCAGTGAATACTGGGAGCTACTTATAATCATGCCACAT GAAATGCATTTTTGGAAGTTATAAGAAATAGATAATTTTCTAACCTTCTGTACAAAAGAAGGTA TATTTTTGTAACATCATTTTCCTACTGCATTATTGTTATGGTAGTATGCCAGCAACCAATAACT TTTCAATTCTCTCTATTTTCCAATCACTACTAAATCATCTAACTTTAGACATCTTTATAACGCA AGACTCAGCAAGAGCTCACCATGTGTAAAACAGCACCAACACATTAACTATTCATGTGGTAGTA AAGAAATGGTTTGTCTGAGTGTCTAAAGCATTATGTTCTATTCTTTGAATTTAGACATAAGATT TTTAAAAAAAATGATGTGAGCACTTATATATGGGTTGTGTTTGCTATGATGTGTATGAGCAGCA TTTTTATGTGTTTTGTTATGACAACCTCTACCGCAGGTTACCCAGTTTTCACCATCGCTGCTGA AATCTGAAGGAGTACATGTATACCGTTGTGTTCAGCATGAGGGCGAGTTTGTCTTGACATTCCC AAGGGCGTACCATGCTGGTTTCAATTGTGGCTTCAATTGTGCCGAAGCTGTTAATGTGGCTCCT ATTGATTGGTTACCGATTGGACATAATGCTGTAGAGCTTTATCGTGAGCAAGCTAGGAAAATAA CCATTTCTCATGATAAGTTGTTGTTGGGGGCTGCAAGAGAAGCAATAAGAGCTCAGTGGGATAT CCTATTCCTCAAGAGGAATACTGCTGATAATATGAGGTGGAAGAGTATATGCGGAGCTGATAGC ACTATATTCAAGGCTCTTAAGGTAAAGTCCAATTAAAATATGTGTTGTATTGTTTGTTTAAGAA CTCAATGGAAGCTCATACTTAAAATTCTCTGTTTAGGCACGAATTGAGACAGAGTTGGTGCAAA GGAAAACTCTAGGTGTTCCAGCTCAATCAAGGAAAATGGATGCTGAATTCGATTCCATTGATAG GGAATGTGCCTTGTGCTACTATGATTTACATCTTTCTGCTTCTGGCTGTCCATGCTGCCCAGAG AAATATGCTTGCCTTGTACATGCAAAGCAACTTTGCTCATGTGACTGGGACAAAAGGTTTTTCC TATTCCGCTATGATGTCAATGAGCTAAATATCTTAGCTGATGCTTTAGGGGGGAAATTAAGTGC CATTCATAGATGGGGCGTCTCTGATCTTGGATTAAGTTTGAGTTCATGTGTCAAACGAGAAAAG GTCCAAGATTCCAAGACTGTTCGCAGATTAACTGATGGTCCAAGAAGGTCTTACATGTCACAGG CATCAGCAGTATCCTTGGTTTCTTCTTCTACTTCCAATGAACAGAAAGATGAAGGAAATAAGAT CATGAAGATAGCTAGCCCACAGACAAATAATGTGTGCCCTTCTGTCGAGCAAAGGAAATCAGAG AATATTTCACCATTGAAGGAGCCATGTGTAAGGAATGAGTTGTCATGTACAACAAATTCTGATA GTAACGGATTGCAATATAATGGAGGACTTGGAGGCCATAAAGGATCTGCACCAGGCTTGCCAGT TTCTTCTAGCCCATCATTTTCTTCCAACGTTGCAACAAGGCCCATTAGTACTTCAAGTGTATCC ATGAAAATTGTGCAAGGCTTGGTGGCATCTAAAAGTTGTATACAAGCTTCCTCTCGAACTGGAG ACAGTAGATCATTGCTTGGTGAGCATCATAACAGATCACCGGCAATGATTCATGATGGAACCAA CATGAAGTCCAGTTTGGAAAGCTCAAACAATTCTTGCAGGTTGATTGCATCTGACTATAATGCA ACTCCGTGTCATTCATCCAAGGATCAGGTATTAGTAACACCAGGGACTAATGCCTCAGTAGTGA CTCTGAAAGATAGCAGCCAGGTCCATAGTGCGTCAAGTCAGCAGTTTGTCAGAACTGGCCCATG GACACAAAGTGCTTCTCATGAAGCATCATCACCTAGTACCTCTGCTTTGAAGCCTTCTTTAGAT CCCCCTGCCATGAAAAATCTGTATGGGGGTTTTACTCAAGGCAGTGCCCATCCTGGACCTCCAA GTTTCAGTAATCAGCAACCAAATGATGGGCGTCTTCAAAGAACATCTGAATCTCTACCAGGTGT GGAAGCTAGAGCTAGGGGACATCCAACTGTCACGGCACAGCCTGCACTAGAAATTCACAGCAGG AATGGAGGTGCACAGAAGGGTCCTCGCATAGCCAATGTTGTGCATCGTTTCAAGTGCTCTGTTG AACCTCTCGAAATTGGTGTTGTGCTATCAGGGAGGCTGTGGTCTTCAAGCCAAGCAATCTTCCC GAAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_006024* 						
					
						PMCS
						0.405826402

Conservation Information
Conserved circRNAs	osi_circ_006024*
PMCS	0.405826402

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							5942560-5942371(+)
5945209-5942371(+)
5942562-5945284(-)
						
					

						Potential amino acid sequence
						
							MCFSSFCWHVEDHHLYSLNYMHWGAPKLWYGVPGKDAVNLESAMRKHLPELFEEQPDLLHNLVT
QFSPSLLKSEGVHVYRCVQHEGEFVLTFPRAYHAGFNCGFNCAEAVNVAPIDWLPIGHNAVELY
REQARKITISHDKLLLGAAREAIRAQWDILFLKRNTADNMRWKSICGADSTIFKALKARIETEL
VQRKTLGVPAQSRKMDAEFDSIDRECALCYYDLHLSASGCPCCPEKYACLVHAKQLCSCDWDKR
FFLFRYDVNELNILADALGGKLSAIHRWGVSDLGLSLSSCVKREKVQDSKTVRRLTDGPRRSYM
SQASAVSLVSSSTSNEQKDEGNKIMKIASPQTNNVCPSVEQRKSENISPLKEPCVRNELSCTTN
SDSNGLQYNGGLGGHKGSAPGLPVSSSPSFSSNVATRPISTSSVSMKIVQGLVASKSCIQASSR
TGDSRSLLGEHHNRSPAMIHDGTNMKSSLESSNNSCRLIASDYNATPCHSSKDQVLVTPGTNAS
VVTLKDSSQVHSASSQQFVRTGPWTQSASHEASSPSTSALKPSLDPPAMKNLYGGFTQGSAHPG
PPSFSNQQPNDGRLQRTSESLPGVEARARGHPTVTAQPALEIHSRNGGAQKGPRIANVVHRFKC
SVEPLEIGVVLSGRLWSSSQAIFPKGDIWC*(+)
MLCIVSSALLNLSKLVLCYQGGCGLQAKQSSRKVIYGADLETGTFGSGFPKLSPETKSDAEDKY
AQSGWNLNNLPRLQGSVLSFEGGDISGVLVPWVYVGMCFSSFCWHVEDHHLYSLNYMHWGAPKL
WYGVPGKDAVNLESAMRKHLPELFEEQPDLLHNLVTQFSPSLLKSEGVHVYRCVQHEGEFVLTF
PRAYHAGFNCGFNCAEAVNVAPIDWLPIGHNAVELYREQARKITISHDKLLLGAAREAIRAQWD
ILFLKRNTADNMRWKSICGADSTIFKALKARIETELVQRKTLGVPAQSRKMDAEFDSIDRECAL
CYYDLHLSASGCPCCPEKYACLVHAKQLCSCDWDKRFFLFRYDVNELNILADALGGKLSAIHRW
GVSDLGLSLSSCVKREKVQDSKTVRRLTDGPRRSYMSQASAVSLVSSSTSNEQKDEGNKIMKIA
SPQTNNVCPSVEQRKSENISPLKEPCVRNELSCTTNSDSNGLQYNGGLGGHKGSAPGLPVSSSP
SFSSNVATRPISTSSVSMKIVQGLVASKSCIQASSRTGDSRSLLGEHHNRSPAMIHDGTNMKSS
LESSNNSCRLIASDYNATPCHSSKDQVLVTPGTNASVVTLKDSSQVHSASSQQFVRTGPWTQSA
SHEASSPSTSALKPSLDPPAMKNLYGGFTQGSAHPGPPSFSNQQPNDGRLQRTSESLPGVEARA
RGHPTVTAQPALEIHSRNGGAQKGPRIANVVHRFKCSVEPLEIGVVLSGRLWSSSQAIFPKGDI
WC*(+)
MPTYTQGTRTPEMSPPSKERTEPCSLGKLFRFQPDCAYLSSASDFVSGDNFGKPLPKVPVSRSA
PYITFREDCLA*(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	5942560-5942371(+) 5945209-5942371(+) 5942562-5945284(-)
Potential amino acid sequence	MCFSSFCWHVEDHHLYSLNYMHWGAPKLWYGVPGKDAVNLESAMRKHLPELFEEQPDLLHNLVT QFSPSLLKSEGVHVYRCVQHEGEFVLTFPRAYHAGFNCGFNCAEAVNVAPIDWLPIGHNAVELY REQARKITISHDKLLLGAAREAIRAQWDILFLKRNTADNMRWKSICGADSTIFKALKARIETEL VQRKTLGVPAQSRKMDAEFDSIDRECALCYYDLHLSASGCPCCPEKYACLVHAKQLCSCDWDKR FFLFRYDVNELNILADALGGKLSAIHRWGVSDLGLSLSSCVKREKVQDSKTVRRLTDGPRRSYM SQASAVSLVSSSTSNEQKDEGNKIMKIASPQTNNVCPSVEQRKSENISPLKEPCVRNELSCTTN SDSNGLQYNGGLGGHKGSAPGLPVSSSPSFSSNVATRPISTSSVSMKIVQGLVASKSCIQASSR TGDSRSLLGEHHNRSPAMIHDGTNMKSSLESSNNSCRLIASDYNATPCHSSKDQVLVTPGTNAS VVTLKDSSQVHSASSQQFVRTGPWTQSASHEASSPSTSALKPSLDPPAMKNLYGGFTQGSAHPG PPSFSNQQPNDGRLQRTSESLPGVEARARGHPTVTAQPALEIHSRNGGAQKGPRIANVVHRFKC SVEPLEIGVVLSGRLWSSSQAIFPKGDIWC(+) MLCIVSSALLNLSKLVLCYQGGCGLQAKQSSRKVIYGADLETGTFGSGFPKLSPETKSDAEDKY AQSGWNLNNLPRLQGSVLSFEGGDISGVLVPWVYVGMCFSSFCWHVEDHHLYSLNYMHWGAPKL WYGVPGKDAVNLESAMRKHLPELFEEQPDLLHNLVTQFSPSLLKSEGVHVYRCVQHEGEFVLTF PRAYHAGFNCGFNCAEAVNVAPIDWLPIGHNAVELYREQARKITISHDKLLLGAAREAIRAQWD ILFLKRNTADNMRWKSICGADSTIFKALKARIETELVQRKTLGVPAQSRKMDAEFDSIDRECAL CYYDLHLSASGCPCCPEKYACLVHAKQLCSCDWDKRFFLFRYDVNELNILADALGGKLSAIHRW GVSDLGLSLSSCVKREKVQDSKTVRRLTDGPRRSYMSQASAVSLVSSSTSNEQKDEGNKIMKIA SPQTNNVCPSVEQRKSENISPLKEPCVRNELSCTTNSDSNGLQYNGGLGGHKGSAPGLPVSSSP SFSSNVATRPISTSSVSMKIVQGLVASKSCIQASSRTGDSRSLLGEHHNRSPAMIHDGTNMKSS LESSNNSCRLIASDYNATPCHSSKDQVLVTPGTNASVVTLKDSSQVHSASSQQFVRTGPWTQSA SHEASSPSTSALKPSLDPPAMKNLYGGFTQGSAHPGPPSFSNQQPNDGRLQRTSESLPGVEARA RGHPTVTAQPALEIHSRNGGAQKGPRIANVVHRFKCSVEPLEIGVVLSGRLWSSSQAIFPKGDI WC(+) MPTYTQGTRTPEMSPPSKERTEPCSLGKLFRFQPDCAYLSSASDFVSGDNFGKPLPKVPVSRSA PYITFREDCLA*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os05g0196500_circ_g.7

Address

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