Detail information of AT2G03530_circ_g.2


General Information
CircRNA Name AT2G03530_circ_g.2
ID in PlantcircBase ath_circ_012686
Alias NA
Organism Arabidpsis thaliana
Position chr2: 1072472-1072843  JBrowse»
Reference genome TAIR10.38
Type   ei-circRNA
Identification method PcircRNA_finder
Parent gene AT2G03530
Parent gene annotation ureide permease 2
Parent gene strand +
Alternative splicing AT2G03530_circ_g.1 AT2G03530_circ_g.3 AT2G03530_circ_g.4 AT2G03530_circ_g.5 AT2G03530_circ_g.6
Support reads 2
Tissues aerial
Exon boundary   No-No
Splicing signals   AG-TC
Number of exons covered AT2G03530.1:2
AT2G03530.5:2
AT2G03530.2:2
AT2G03530.3:2
AT2G03530.4:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGAACAAACTCATCAAAAGACCTGGAGACTAATGTTACGACAAAACCTAAAGAAGGGACAGCAA
GATTTCTTATAGAGCTTGAGAACACAAGAGCCATAAaggctcaaccttgaactatttcttggat
gataagatcaacaaagccgagatccttttccccggtgtggcctgtttcttgatcgcggtttgtc
ttggttca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGGCTCAACCTTGAACTATTTCTTGGATGATAAGATCAACAAAGCCGAGATCCTTTTCCCCGGT
GTGGCCTGTTTCTTGATCGCGGTTTGTCTTGGTTCAGCAGTTCATAGATCCAATGCAGACGATA
ACAAGGCCAAGCTAAGAGACTTTGAAACGGCTAAGCAAGAGTAATCAAGATTCAGTCTCTCACT
TTATTTTCCTAAACAATCTGTTTTCTTACTAATATCCCAATCTTGTCTCATCCAGAGCTTCAGG
TCCATCTACCGAAATAGGAACAAACTCATCAAAAGACCTGGAGACTAATGTTACGACAAAACCT
AAAGAAGGGACAGCAAGATTTCTTATAGAGCTTGAGAACACAAGAGCCATAA
Conservation Information
Conserved circRNAs NA
PMCS 0.518203225
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017