Detail information of Zm00001d008320_circ_g.1


General Information
CircRNA Name Zm00001d008320_circ_g.1
ID in PlantcircBase zma_circ_002668
Alias circ2705
Organism Zea mays
Position chr8: 5088874-5093453  JBrowse»
Reference genome AGPv4.38
Type   ue-circRNA
Identification method CIRCexplor2
Parent gene Zm00001d008320
Parent gene annotation phosphoadenosine phosphosulfate (PAPS) reductase family protein
Parent gene strand +
Alternative splicing Zm00001d008320_circ_g.2
Support reads 9
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered Zm00001d008320_T003:10
Zm00001d008320_T006:10
Zm00001d008320_T005:9
Zm00001d008320_T001:10
Zm00001d008320_T004:10
Zm00001d008320_T002:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTAGACACCGAGTGGGATTGTCTTCTAGGTACCCAGGAGAGTGGTCTAATGCCATCAAAACCT
TTTGTGTCAAAGCATCTCAGCACTACACTTTCAGATgttatgggttacctctggaaaccatcca
ttcagatttcaagtctggtctagaaggccttctgaaggagaagcccaccaaagcaattttcatt
ggcacaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTATGGGTTACCTCTGGAAACCATCCATTCAGATTTCAAGTCTGGTCTAGAAGGCCTTCTGAA
GGAGAAGCCCACCAAAGCAATTTTCATTGGCACAAGAATTGGTGATCCAAATGCGGTGATTTTC
TTTTACCATTGCTCATTTGTTGTTAACAACCCCTTGCACCTATTGTACGCAATGATTATGCCCA
TGGTGTTCCCAGTTCCTTACAGTTTTGGTATCTCACTGAACTTTGAGTAAACACAATTTTGAAA
TGATAGGTTGGTCAAGAACAGTTCTCTCCTAGTTCACCTGGCTGGCCTCCTTTTATGAGGGTGA
ATCCAATCTTGGATTGGTCATACAGGTTTTTCTCCTGATCATGTAACAAATCAAGCCTTTCTAG
TATGCCTGTTCAGATGCTAAGGAGCATTATTTTCTGTGCCAGGGATGTTTGGTCTTTTCTAATA
ACATGTAAGGTCAAATACTGCAGCCTTTATGATCAAGGGTAGGTTCTTATTTTTATGTTCAAGA
CTTCATATTTCTAGTTGCCTGTTTGCAATTTGCATACCTTGTATAGCTAAATGTTCCCTAAAAA
GGACCAGTCCCCTCCTTTGTTTGAATGAGCATTTTTGTTACCTAGTCCACTTATTTTTCAGCTC
ATTTTGTGAATCCACTGCAGAAGTATTCTGGTCTTCGATATTAACTTTGCAATATAACTTACAT
CTATCATATATACTGATTTCAGGTATACTTCCATTGGGAGCATACACGATACTGTTCCAAATGC
ACTCCTTAGTGATTCATCATCTGAGAAAAGTTTTAGACCAGCATACATGCTAACTGATGGAAGG
CTTGAAAGAGCTGGTAGAACAAAAAAGATTAATCCTAAAGTAGAAATGAATTCTGCTGCAAGCA
ATGGCATCAACGATACTGAGGGAGGACGGATGATCTCACGGGCGGCATCAATCATTGTAGTCGG
TGATGAAATTTTGTGAGTGGTCCCTTCTAGTTATCACATTTGATGTAATTCTGTTATGCTTCAG
GTTCTTACGCTTGGAGTAGTTCATGATAGTAATGGAACCCATGATCTTTTTTTTGTTTACTTGA
AATTTATGCCCCATCCTGCAAACTCTTTCATCTCTGGTTTTGCTTTTTGGATGGATGATTGGAT
TATATAAATTGATAATCTGGACACTTCAGAGAGATAAGAGAACTAGAGAAGTGTAGCCAGACAT
TCTGAAGTATAGATATACATTTTGTGTTAGTCATTTTATTTAATAATGTCAGACAACTTAATGT
TGCTACACTATTTCATATTCTTTCATGTTTCCTGAAATCCATTAAAATATTTGATGGATAACCA
AACTTATTAACCTTTAGATTTAACATGTAGTCCATACCTATCCATTTTGATTCTTCAGGTTTGG
TACAACTGAGGATAACTTAGGAGCAGCCTTGTGCAAGAAGCTTCATGCAATTGGCTGGCGGGTT
TCTCATGTAGCAGTTGTTCGCAATGAGGTAAATATAAATCACTTATTGAAATACTCTTCTGGTC
CCTTTTAGAAGGCTTACCGACAATTTTGTCAAGTCCATTATAGAAGGCACTCCTTAGGCCTGGG
CCCCATTAACAAAGTTGACCAAAAAAATGAGATACAAGCAGTAATTGGTGTGCGCACCGAGTAG
TAGGAATATAAAGTTGTTTTTGCATGCATGTCTATTCAGTTCATTCATTTTTGACAACCGCATG
CATAACCACATGTAGAAGTCATCCAAAAGGAGCGCTGCACCCGGTGAAAATCAAATACATGTCT
TTGCATTCTAACTTTTAGTATGCCTTCTAAAAGGGACAGGGTGGATTATACTATGACCCTGGAC
CACTTTGGGACGCGGGAAATTTTCATGTTTCCTTCATTTTTCCTTGAATTTAAACTGATTCGCC
AACGCACTCACAGTGCAGTGGTGGATCCTCCTGTTTCGGAGGCCACCCGCCCAGGTTCGATTCC
CAGTCTTGTGATTGGCCGGGTGTGGCACTGGGGTTTTACTTTCCCTTTTCCCTTGAGGGACCTG
AACAGCATGTGTGGGTATTGTGTGTGTATGTGTGCGGTGTGCCCGGTTGACGTGTTCTGAGATC
TCTTGGGCAGTCTCACCTGTATTTGAGTGTGTGCCTGTGCGGTTGGTATACGTGTCCAATACGA
GTCTTACATGATATGCTAGTGCTCCTGGCAGTGTTAAAAAATGATTATTGGGAAATTTCTGGAC
AATTCCTGTGAAATTCCTACCCTCTAAAGGAGGCCTAAATGCATGACCCAGCTCACATTGGCTT
AATAGATTGCTATGTTTTTTGGTATACTGCCACTGTCATGTTGTTCTTTCTCAAATACTACTGG
CATATCTGTGTGGCCTTGCAGATTGATTCTGTTGCTGAAGAAGTTGAACGTTGTAAATCTACTG
ATGACATGGTTAGTGTCTATATAGGCTATTTAATTGTATAAAGTTTTCAAGCTAGATGTGTAAT
GAAATCCATGTTGTATTTAAGGTGTTTATTTTTGGTGGACTCGGGCCGCTACATTCAGACGTTT
CTTTGGCTGGTGTCGCGAAAGCATTTGGAGTTCGTCTGGTGCGTCCAATAACATTTTCTTGCTG
CAAAAGTGAATTTTCGCAGTATTTCTCCATTTATGAGTTATGAATTATGAGAGCAACTCCAAGA
GATTATCTAAAAAGACTAGCCAAATTTACTGATTTAGCTACTCTCTAAAATAGATTTTAGAGAA
AAAGTGTAGCCTAATCCAACAAAATCGGTAAACCTACGGACTGAATAGAGAGTGAAGCAGACTA
TCAAAAAATGGAGAGCGAAGATGGAGAAATAGAGAGCCACTAAATTTGAAGAGTCGTTTACAGA
GTCTATTGGATACAATTTTCTTTTAATATTAGCTAAATTTACCTTTACAAAACCATATACATAG
TCTCTTGGAGTTGCTCTGATCTTTTCTATATAAATTCTCACTATTATAATATTGTGCGGTGTAT
TTTCTGCATTTTTGATTCTACAATGAAGAAAAGCTTGTGCATTGACCTATAGGGCTGCATTAGT
GTCACAAGAAAACCATGTTGTGGATGCATTATGAAATGTAGGATCCTCTCAATTGCATAACTAT
GAATTGTTGTTGTACCAAATGGTTATTTCATTATTAAACTGACAAAAATGCCATTTTTTAGTAT
CAACTTATCTTTGCTTTGAATTAGCGTAGGCTCCTGATGAAGAATTTGAAGATTACCTTAGTCA
ACTCATGGGAAACAATTACACTGGTGACCGAAATGAGGTAACATGGGCTTCAAGTATTAAACTT
CTTGAATGTACATTACTACATTGGTTTGTGATTGCATGTGCTTATTCTAACAAAGAGCACTCTT
TTTACGAGTTAACTTTTTTCTATTTCTTTCCCAGATGGCACAGTTGCCAGAAGGTATTACAGAA
TTACTGCATCACAAAACGCTACCATTGCCATTGGTATGTTCTTTAGCTTGGTGCATTTGTCTGT
TTTGAACTCTGAAGCCACAATTTCTTTTTTTTGGGTTTCCTAAGGACCTAGTAGGTTCTATGAT
ATAATTCTGACACAGCAACAGTCAAGTCCCTATAATTTTCTGCTCATAAAAATGGTACCTATTC
TTAACTTGGAAGCTTATGGGGGCATGCGGGAATGTAAAGTTGGCATTGAACCAACATCTGGTAA
GAAAATCAACAATATCAACAACGACAACAAAGCCTTTTAGTCCTAAGCAAGTTGGAGTAGGTTG
GAGTTGAAATCTAACGGAAGCCACAAGTCAAGGTTTAGACACATGTATAGCTGTTTGTTACACT
CTTTTTTTTCTCGAACACGCAGGAGATCTGTTTGTCATGCACTCTTATTCAGCGCTAAATCTTT
GGGTATATTCATCATTTCAAGACTTCTTTTACTGTCTCTTTCTATGTTAATTTTGGTCTTCCTC
TACCTCTCTTTTCATTACTATTGCACTGGTGCCTCTAGAGGTCTCCGTTATACATGTACAAACC
ATCTCAACGGGCGTTGGATAAGCTTTTCTTCAATTAGTGCTACCTCTAGCCTATCACACATATC
ATCCTTTTAGACTCGATCCCTTCTTGTATGGCCACAAATCCAACGTAGCATAAGCATTTTCGCA
ACACTTATCTGCTAAACATCACTGTTCTTAAGGCGGTACGGTGAGCAAGTAAAATGACCACCGC
CTTAACGCCTAGGCATCCAGGCGCTCGGGTAATTCTAGGCGACGCCTTAAAAACACTGCTAAAC
ATGCCATCTTTTTTAGACCAACATGTTGCACCATACAACATAGCTAATAAGAAAATACATACAG
ATATTTTGAAGTTCTCTCCATGCTTTTTAAAGCTTGTAATCAATTTTGTATTATTGCCTTATGA
TATTTTTTCTTATGCAGATCAAATGTAGAAATGTCATTGCTCTTGCTGCAACCAATATGGATGA
ACTAGACACCGAGTGGGATTGTCTTCTAGGTACCCAGGAGAGTGGTCTAATGCCATCAAAACCT
TTTGTGTCAAAGCATCTCAGCACTACACTTTCAGAT
Conservation Information
Conserved circRNAs NA
PMCS 0.020751396
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b