Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Solyc11g005130.1_circ_g.2 |
| ID in PlantcircBase | sly_circ_003232 |
| Alias | 11:119413|123051 |
| Organism | Solanum lycopersicum |
| Position | chr11: 119413-123051 JBrowse» |
| Reference genome | SL2.50.38 |
| Type | e-circRNA |
| Identification method | CIRI |
| Parent gene | Solyc11g005130.1 |
| Parent gene annotation |
protein_coding |
| Parent gene strand | - |
| Alternative splicing | Solyc11g005130.1_circ_g.1 |
| Support reads | 2 |
| Tissues | fruit |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Solyc11g005130.1.1:4 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.136146773 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
122811-119419(+) 119711-119415(-) 119467-123002(-) |
| Potential amino acid sequence |
MKESSVSYSSSSGKSLRSSSSSLCLPTYKRSIFSITAFKRFPGGASLTSLSAGCPIV*(+) MSELSPSASLRGNSAEEKDLDQQKIGVTQSKNLGDKLKDGSEISGKSSQRLHDRSSYAQEKSNV GRSVNISDGIDQSVQRRDEKFNVSGFEGKNSGQTMGQPADKEVKDAPPGNRLNAVIEKIERLYV GKQSDDEEDLNDFPDDDEYDTEDSFIDDTELDEYFQVDNSAIKHDGFFVNRGKLERIEPVSPKN QQPKKRRRKDLAKSHVGDDDGHNPSKPVKVGKKAGKLVPVVSETSHPSHGVALQNVSHEEKFPN QLNVSEIPTTKKAADTQDMSELSPSASLRGNSAEEKDLDQQKIGVTQSKNLGDKLKDGSEISGK SSQRLHDRSSYAQEKSNVGRSVNISDGIDQSVQRRDEKFNVSGFEGKNSGQTMGQPADKEVKDA PPGNRLNAVIEKIERLYVGKQSDDEEDLNDFPDDDEYDTEDSFIDDTELDEYFQVDNSAIKHDG FFVNRGKLERIEPVSPKNQQPKKRRRKDLAKSHVGDDDGHNPSKPVKVGKKAGKLVPVVSETSH PSHGVALQNVSHEEKFPNQLNVSEIPTTKKAADTQDMSELSPSASLRGNSAEEKDLDQQKIGVT QSKNLGDKLKDGSEISGKSSQRLHDRSSYAQEKSNVGRSVNISDGIDQSVQRRDEKFNVSGFEG KNSGQTMGQPADKEVKDAPPGNRLNAVIEKIERLYVGKQSDDEEDLNDFPDDDEYDTEDSFIDD TELDEYFQVDNSAIKHDGFFVNRGKLERIEPVSPKNQQPKKRRRKDLAKSHVGDDDGHNPSKPV KVGKKAGKLVPVVSETSHPSHGVALQNVSHEEKFPNQLNVSEIPTTKKAADTQDMSELSPSASL RGNSAEEKDLDQQKIGVTQSKNLGDKLKDGSEISGKSSQRLHDRSSYAQEKSNVGRSVNISDGI DQSVQRRDEKFNVSGFEGKNSGQTM(-) MRSLMSVALRERTQVRLWDNLLIRKSRMHLLEIV*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Yin et al., 2018 |