Detail information of Solyc11g005130.1_circ_g.2


General Information
CircRNA Name Solyc11g005130.1_circ_g.2
ID in PlantcircBase sly_circ_003232
Alias 11:119413|123051
Organism Solanum lycopersicum
Position chr11: 119413-123051  JBrowse»
Reference genome SL2.50.38
Type   e-circRNA
Identification method CIRI
Parent gene Solyc11g005130.1
Parent gene annotation protein_coding
Parent gene strand -
Alternative splicing Solyc11g005130.1_circ_g.1
Support reads 2
Tissues fruit
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Solyc11g005130.1.1:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATAAAATGCATACCACATATAAGCGTTCAATCTTTTCTATCACAGCATTTAAACGATTTCCAGG
AGGTGCATCCTTGACTTCCTTATCAGCAGGTTGTCCcatagtctgacctgagttctttccctca
aagccactgacattaaacttctcatcacggcgctgaacagactggtctattccgtcagaaatat
ttactgat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATAGTCTGACCTGAGTTCTTTCCCTCAAAGCCACTGACATTAAACTTCTCATCACGGCGCTGA
ACAGACTGGTCTATTCCGTCAGAAATATTTACTGATCTTCCAACATTAGATTTCTCTTGAGCAT
AAGAACTTCTGTCATGTAACCTCTGAGATGATTTTCCAGATATTTCAGAACCATCTTTTAATTT
GTCACCTAGATTCTTGGATTGGGTGACTCCAATTTTCTGCTGGTCAAGGTCTTTTTCTTCTGCA
GAATTGCCACGCAATGATGCTGATGGAGATAGCTCCGACATATCTTGGGTATCTGCAGCTTTCT
TTGTTGTTGGTATTTCAGAAACATTCAACTGATTCGGGAATTTTTCTTCATGGGATACATTTTG
CAAAGCAACACCATGAGATGGATGAGATGTTTCACTAACAACGGGTACTAGTTTCCCAGCCTTC
TTTCCGACTTTTACAGGTTTACTTGGATTGTGTCCATCATCATCCCCAACATGGCTTTTTGCCA
GATCTTTTCTTCTCCTCTTTTTTGGTTGCTGATTCTTTGGTGAAACTGGCTCACTAAAAGAAAA
TCATGTCAGTTAGAAGTGCCCAAATGAAAGTACCAGTTTTCATTTCTAAGAAAAATTAGCAAAT
AAATCCTTCCCATTTTGCAGCCATAATTACAAATTCACTAGTGTTATGAACAACCTATCACCAG
GGAAAGAACAAGGACATCCGTATGGAGAAAAAGAAGCTAAACCAAAGTCCCAAAAGAAATATAC
ATCTGAATTCCAAAATCAAAGGGAAAACATAACTTACTGAACAAGGAAAGAGAATTTCTTAGGG
AAAGAGATGCAGAGGTTTAAACCATAGAAAAAGTAAATAGCATAAAAAAAACTCCAAGGTCTGT
TGGGGCTTAAGCGCAAAACGCAAATAAAGTATGAACTTCAATGAAAAAAGGCACCAAGGGAGAA
AAAGTCCAAATATATATATGTTTAGTCCAAAACTAATAATTTATAAGCATGAATGACAAATATA
TGAACAAAGAAATTGAATAATAATTACGATAAAGTGAAATATCAACTGTTTAGTGTTGTCTCTA
GAAAGAGGTTCATTGGAAAGGAAAAGTATGTTTTAGAACCTTATGACAACTCTAAGGAGCAAAT
TAAGCAAGGTAAAGTGCTCAACACGTTGTGGACCTTGCTTCGGGGCTTAACCAAACCTTTAATA
ACAGGATTAGACAAAAGCAAACATTTCCAATATTGCAAGAACCTAATCTCCTCACACAAGGAAA
GAAATTAACTATGTTTTGAAAGGAAAGTCAATTAGTGTACAACAACTTAACTTCAATTGTTTAT
GGCCAGGAGAGCTACAGTACATTATGCGGGTTTGGACGAACCCAATAGTTTTTGCGTGGACCCT
ATAGTACAAGCGTTAGTATAAAAAATTATATATATATATATGGATTAGGGTAGTAAAGCTTTGT
ATTGCAGATATGTGGGTTCGAAACCCACTTGCTCCCAAAGTCTTCTCCTTTACAGGTAATATGT
TTTACTCTCCTTTTAAAGAAGATAAGACATTTCCTCCCTAAACCCACTCTGCATCATTTTTTCC
TTTGTTGCAAAAGACAATTCCTCTCTAAAACAAAAGGAGACTATCATTTCCAAAATCATATTTT
CAGAAAGAAGTTGGCTAGGACTTGTTACCTTTTTAAAAATATATATTGAATATTGATAATAGGT
AGGCTGGATAAATTATTCGTTTTCACCCAATTCATTTTCAACCAGCCCATATCTGACTCGACCT
GCTCATTTAACACCCCTATCCGAATCCATAAACATCAAAACCTGGCTCCACTTTTGTTTACGGC
TTTTAGCATTTTGGTGTAGATTATAAAGAATGAAGATAGTATGTTAGATTTCATTGATTCCGTG
CAAGCGGGTGGGTTTTTTATCCTATTAGCACCAACTTGATGCTGGCAAGTTTCTCTTTTGCAAT
ATAAACCTACTTACCTTCTTAAAAAATGATTCCCTTTCCTAATTAAACATTACTAGAACATGAT
GAATAAAAAATTCAAAATATAAACAAGAAATAGATAGAACAAACAAGAAAAATTGGAACGGAAT
TATTTTGACAGAATGAGAGAGAAGAGTAAAAAAGAACCCCAAAAGTAAAAGTGGCAAAAGAAAA
AGAGTCGTACATGAGGAGAAGAAACCAGGGAAGGAGTAAACAAGAAATAAAGAAGAAGAGAAGA
GTCGGATTAAATCCAAGAAGAATAAGAAGAAAGCAACATTAAGAGAATATTGAACATCACGTAA
AAGAGGAACCATCAATACTTGCAGGGATTACCAGATTTGGGGGTGAACTTGAATTGGGGAGAGA
ATAAAAAACTACTTCTTATGGTAAAACGTAAGAGTATATGTGGGTCATAACAAGCCCTGATGTG
AGGCTTGAAACCTATTAAGCGCTTCGCCTCGCTTTATGTTAGCAAAGAGAGAAAAGAGCATGTT
CCAAAGGTCGGTGGCAACAGTGCAACGAAGAAACATGTAACTGATAGATCCTCGGTTGCACAAG
CACATGTAGCATAATCATCCAATCACTTGAAACATGAAATTGCGGAGTAATTTTGTCACGTATT
GTTTTATGACGTATGTACTACGTTGTGTTGTATTATAACGTGATGTTTGGATAGATTATATCAT
TCTCCGTCGTAACATAATGTCACACGTCGGCAATTTGAATGATAAACCCACAAGGAAAGTAGGA
TAAGAGACGGAGCTAAAATGAAAAGGTAATGTAAAAGATAAAATAAGATTAATAAATAATAAAG
AAAGACAAAATGAAAAGAAATATTAAGGTAATGATGAGATCAAACCAAATCAATTGTTACATAT
ACTGAAACTTCTCTTCTTCTTTTTTTGAGTAAGGTAAAGTTCATAATGAGACTTTTCATCATTA
CTTAACAATGGATTGAAACGATATGATACCAAAAAAAAGGTAACAATCAAAACAAACATTGTTT
TTAAACTAATTTAAAACTTTAAAATAGATACAAAAACTAAATTTGGATGCCGGATAAAGGGTGA
ACAATTGGTTAAATTATATACAGTGGTGTTTAGACATGTCATATTATTTAAAAATCTCAAGAAA
AAACTCACATGCGCTCCAACTTTCCACGATTGACAAAGAAACCATCATGCTTTATTGCTGAGTT
ATCAACCTGAAAATATTCATCCTGCATAACCAGAAACAATGTACTAAGTACTTTGACTACAACA
TATAGATGCCGCCTGCACAAAGTTGCAAAATATTGACTATGCTTGTAAATCATTCGGATACAAA
ATAACACATATTTGTATAAGGTATATAAGGTTAAGGAACTTGATGTGACCGACCAGCTCAGTAT
CATCTATGAAAGAATCTTCAGTGTCATATTCATCGTCATCTGGGAAATCATTAAGATCTTCCTC
ATCATCACTTTGTTTGCCCTAAAAGGCATAATAGTTATTTAGCAGATCAAGTGCACTGACAAGT
CTAATGTAACGAGTAAACAATAAAATGCATACCACATATAAGCGTTCAATCTTTTCTATCACAG
CATTTAAACGATTTCCAGGAGGTGCATCCTTGACTTCCTTATCAGCAGGTTGTCC
Conservation Information
Conserved circRNAs NA
PMCS 0.136146773
Functional Information
Coding potential Y
Potential coding position 122811-119419(+)
119711-119415(-)
119467-123002(-)
Potential amino acid sequence MKESSVSYSSSSGKSLRSSSSSLCLPTYKRSIFSITAFKRFPGGASLTSLSAGCPIV*(+)
MSELSPSASLRGNSAEEKDLDQQKIGVTQSKNLGDKLKDGSEISGKSSQRLHDRSSYAQEKSNV
GRSVNISDGIDQSVQRRDEKFNVSGFEGKNSGQTMGQPADKEVKDAPPGNRLNAVIEKIERLYV
GKQSDDEEDLNDFPDDDEYDTEDSFIDDTELDEYFQVDNSAIKHDGFFVNRGKLERIEPVSPKN
QQPKKRRRKDLAKSHVGDDDGHNPSKPVKVGKKAGKLVPVVSETSHPSHGVALQNVSHEEKFPN
QLNVSEIPTTKKAADTQDMSELSPSASLRGNSAEEKDLDQQKIGVTQSKNLGDKLKDGSEISGK
SSQRLHDRSSYAQEKSNVGRSVNISDGIDQSVQRRDEKFNVSGFEGKNSGQTMGQPADKEVKDA
PPGNRLNAVIEKIERLYVGKQSDDEEDLNDFPDDDEYDTEDSFIDDTELDEYFQVDNSAIKHDG
FFVNRGKLERIEPVSPKNQQPKKRRRKDLAKSHVGDDDGHNPSKPVKVGKKAGKLVPVVSETSH
PSHGVALQNVSHEEKFPNQLNVSEIPTTKKAADTQDMSELSPSASLRGNSAEEKDLDQQKIGVT
QSKNLGDKLKDGSEISGKSSQRLHDRSSYAQEKSNVGRSVNISDGIDQSVQRRDEKFNVSGFEG
KNSGQTMGQPADKEVKDAPPGNRLNAVIEKIERLYVGKQSDDEEDLNDFPDDDEYDTEDSFIDD
TELDEYFQVDNSAIKHDGFFVNRGKLERIEPVSPKNQQPKKRRRKDLAKSHVGDDDGHNPSKPV
KVGKKAGKLVPVVSETSHPSHGVALQNVSHEEKFPNQLNVSEIPTTKKAADTQDMSELSPSASL
RGNSAEEKDLDQQKIGVTQSKNLGDKLKDGSEISGKSSQRLHDRSSYAQEKSNVGRSVNISDGI
DQSVQRRDEKFNVSGFEGKNSGQTM(-)
MRSLMSVALRERTQVRLWDNLLIRKSRMHLLEIV*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Yin et al., 2018