Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os02g0623500_circ_g.2 |
ID in PlantcircBase | osa_circ_015559 |
Alias | Os02circ19066 |
Organism | Oryza sativa |
Position | chr2: 24851978-24854686 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, SMALT, Segemehl |
Parent gene | Os02g0623500 |
Parent gene annotation |
Lysyl-tRNA synthetase, class II domain containing protein. (Os02 t0623500-01);Similar to Lysyl-tRNA synthetase. (Os02t0623500-02) |
Parent gene strand | - |
Alternative splicing | Os02g0622300_circ_g.1 Os02g0622350_circ_ag.1 Os02g0622300_circ_g.2 Os02g0622350_circ_g.1 Os02g0622400_circ_g.1 Os02g0622400_circ_g.2 Os02g0623400_circ_ig.1 Os02g0623500_circ_igg.1 Os02g0623500_circ_igg.2 Os02g0623500_circ_g.1 Os02g0623500_circ_g.3 Os02g0623500_circ_g.4 |
Support reads | 3/1 |
Tissues | leaf and panicle/shoot, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os02t0623500-02:4 Os02t0623500-01:4 |
Conservation Information | |
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Conserved circRNAs | osi_circ_004113* osi_circ_012022 zma_circ_000924 |
PMCS | 0.551354692 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
24854643-24852001(+) 24854586-24851980(-) 24853869-24854652(-) |
Potential amino acid sequence |
MVGYKWSCFSTTCCSLIENMSNR*(+) MLVGGLEKVYEIGRIFRNEGISTRHNPEFTTIEMYEAYSDYESMMNLAEEIVTRCAMATHGKLR VDYQGTEISLERPWRRETMHSLVKEATGIDFNSFGEDLESAKNAARGIKTESNENISLQACSSV GHVLNEGAAGGAEARPFITHHNSLQRDLYLRIATELHLKRMLVGGLEKVYEIGRIFRNEGISTR HNPEFTTIEMYEAYSDYESMMNLAEEIVTRCAMATHGKLRVDYQGTEISLERPWRRETMHSLVK EATGIDFNSFGEDLESAKNAARGIKTESNENISLQACSSVGHVLNEGAAGGAEARPFITHHNSL QRDLYLRIATELHLKRMLVGGLEKVYEIGRIFRNEGISTRHNPEFTTIEMYEAYSDYESMMNLA EEIVTRCAMATHGKLRVDYQGTEISLERPWRRETMHSLVKEATGIDFNSFGEDLESAKNAARGI KTESNENISLQACSSVGHVLNEGAAGGAEARPFITHHNSLQRDLYLRIATELHLKRMLVGGLEK VYEIGRIFRNEGISTRHNPEFTTIEMYEAYSDYESMMNLAEEIVTRCAMATHGKLRVDYQGTEI SLERPWRRETMHSLVKEATGIDFNSFGEDLESAKNAARGIKTESNENISLQACSSVGHVLNE(- ) MANLGLIIRELKSPLKDHGGGKPCILLSKKQLELTLIALEKILNPPKMLQEGSKQRAMRISHCK LVHLLDMFSMREQQVVLKQDHL*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Lu et al., 2015;Chu et al., 2017 |