Detail information of Os02g0623500_circ_g.2


General Information
CircRNA Name Os02g0623500_circ_g.2
ID in PlantcircBase osa_circ_015559
Alias Os02circ19066
Organism Oryza sativa
Position chr2: 24851978-24854686  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, SMALT, Segemehl
Parent gene Os02g0623500
Parent gene annotation Lysyl-tRNA synthetase, class II domain containing protein. (Os02
t0623500-01);Similar to Lysyl-tRNA synthetase. (Os02t0623500-02)
Parent gene strand -
Alternative splicing Os02g0622300_circ_g.1 Os02g0622350_circ_ag.1 Os02g0622300_circ_g.2 Os02g0622350_circ_g.1 Os02g0622400_circ_g.1 Os02g0622400_circ_g.2 Os02g0623400_circ_ig.1 Os02g0623500_circ_igg.1 Os02g0623500_circ_igg.2 Os02g0623500_circ_g.1 Os02g0623500_circ_g.3 Os02g0623500_circ_g.4
Support reads 3/1
Tissues leaf and panicle/shoot, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os02t0623500-02:4
Os02t0623500-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTTCAAATGCAGCTCTGTTGCAATCCTCAAGTAAAGATCTCTTTGCAGTGAGTTATGGTGGGT
TATAAATGGTCTTGCTTCAGCACCACCTGCTGCTCCctcattgagaacatgtccaacagatgaa
caagcttgcaatgagatattctcattgctctctgttttgatccctcttgcagcatttttggcgg
attcaaga
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 194
Transcript exons: 24851978-24852073,24854589-24854686
CTCATTGAGAACATGTCCAACAGATGAACAAGCTTGCAATGAGATATTCTCATTGCTCTCTGTT
TTGATCCCTCTTGCAGCATTTTTGGCGGATTCTTCAAATGCAGCTCTGTTGCAATCCTCAAGTA
AAGATCTCTTTGCAGTGAGTTATGGTGGGTTATAAATGGTCTTGCTTCAGCACCACCTGCTGCT
CC

Transcript length: 504
Transcript exons: 24851978-24852175,24853842-24853946,24854152-24854244,24
854579-24854686
CTCATTGAGAACATGTCCAACAGATGAACAAGCTTGCAATGAGATATTCTCATTGCTCTCTGTT
TTGATCCCTCTTGCAGCATTTTTGGCGGATTCAAGATCTTCTCCAAAGCTATTAAAGTCAATTC
CAGTTGCTTCTTTGACAAGAGAATGCATGGTTTCCCTCCTCCATGGTCTTTCAAGGGAGATTTC
AGTTCCCTGATAATCAACCCTAAGTTTGCCATGAGTAGCCATTGCACATCTAGTAACAATTTCT
TCAGCCAAATTCATCATGCTTTCATAGTCTGAATAGGCTTCATACATCTCAATTGTGGTAAATT
CAGGATTATGGCGAGTGGAAATGCCTTCATTCCGAAATATTCTCCCAATCTCATAAACTTTCTC
AAGCCCTCCAACCAGCATCCTTTTCAAATGCAGCTCTGTTGCAATCCTCAAGTAAAGATCTCTT
TGCAGTGAGTTATGGTGGGTTATAAATGGTCTTGCTTCAGCACCACCTGCTGCTCC

Genomic sequence CTCATTGAGAACATGTCCAACAGATGAACAAGCTTGCAATGAGATATTCTCATTGCTCTCTGTT
TTGATCCCTCTTGCAGCATTTTTGGCGGATTCAAGATCTTCTCCAAAGCTATTAAAGTCAATTC
CAGTTGCTTCTTTGACAAGAGAATGCATGGTTTCCCTCCTCCATGGTCTTTCAAGGGAGATTTC
AGTTCCCTGTTTGGTATTAAACAACAATTGTTTATCAATGTGAAAAGACACAAGAGTAATACGT
GAGTGTGTTCCAGGAAATTAGGTAGGGAAAAGGTAAACTATAGATCAAAAATCATATGCACACA
CGATCCTCATTCTTCATTTTGCTCCAGGATTTGCTTATGCACCATTTTGGTAATTTCTGAAAAT
TCGTTGATGGCACATAATTCAATGAAAAATTGAGAACATGCTTGTAGCAAGTGGTAAGTCCTCC
AGTTGTGAGCCTACCAACCAGGGTTCAAACCCTGGTTCTCACCCAAAAAAAAAAAAGGCCCCTT
GCTGTGTGTTCCCAAGTACAGGTTAAGACATGGCTTGTGGCAACTGGCAATGGATTACCTGTAC
GGGCAAGAGCCGGCTTTCGGGGCCATTTCTTGACCTTAAATGCAATGCCTTTGGGATGTCTCTC
CCCTTGGGTCAGGTTTTTCAATGAAAAATACAATTGAACGGTTCCATGGACCTGACATAACCTT
CATCCTCCCAAACCACTCTCTAACATCTACTTCTCATTTTATCCCCTTCTATCTCCTGAGAGCA
ACACTACCACCTGTTTCTCTCTCCCCCTACTGCGTACTGCTATCATAGCCTCTACCATTTTTTG
CTGCTGCTACTAGATCAGACCATGCCAACCTGGCAACCTTGATGCCACCAAATTCAGCCATTCC
TGGCCTCACACCAACACGCGTGGTGATAACAGGAAACAAACAGCAACAAGCACACCAAGACAAC
TGCCAGCATGAAGACAGCGTTGTCATGGATTAGTGAGGAGGCACCATTGCCAGCCATTGGCACT
GGCAGTGGCCATAAGAAATGGCATCTGTAAGTACAAGCCAGGGCACAGGAGGTGTCTTCACCCC
CTTCTTCCTTCCAATCGCCTTTGCTGTAGCGCTCTCCATTTCCACTCCAGGTCTGGAGGCCTCA
CACTGGGTTGACCTTACCGTGTACTCCTTGTCAGAGCAATTTCATTTAATATGAATAGATACCT
CCTCGAGCATGCCACCTCTCACTTGTCAGTTGTAGTATACAAAGCACCATAAGTTGTTTGCGAA
CAGTACATGTACTTTGCAACATACTTGGGCTTGCAGGGGCTAAACATTGTACTATATTTTGTAT
TATACTGTATATTGTGTAGTAAATGAGAAGTAATACATTTGTTGTTGCTTGTACAACTCACCTC
TAGAGTTGAAAACAATGAATACTTGAATAGTAGCTCAATCAAAATTCAATTAATCTAAAAGGAG
AAAATGTTTTTGATGGGGCACTTTAATTTCTTTGATCAGACCTATGATTTCTAATGTCAATGGT
TTTATTTTGGTACAAATTTCTAGAGAAATCTGCAATGCAGATTGTTTTAGGACCAGAAATGTTT
TTTTTTTCTGGCATGCCCAAGTGCCTATCTGCATATGGCTTCCAGACCAGGAAACACCAGTACG
GAAGCAAGGTGTGGATAATTGTTATTGAGCTTGGAACAGATTCAGTACAAAAGAAAAATAATAG
AAGCAACAAAGATGGCATGATTCTGCTCTGATATGTGTCCAGATGATCCAAATTAATAAGGCAA
AAATGCATTGCAATATATATATACTATATACTATAGTTACTAACTTACTATGGTAGACTTAAAG
ACTCATACCTGATAATCAACCCTAAGTTTGCCATGAGTAGCCATTGCACATCTAGTAACAATTT
CTTCAGCCAAATTCATCATGCTTTCATAGTCTGAATAGGCTTCATACATCTAGCTTCCAAATAC
AAGGCAGTGAGTCAGACCTCACTTAGAGTAGAGCACATTATGCAAGAAAATGGAATAAACAGGA
ACATGGAAGATAAAACCACTAGGCTCAACCTACATGGTAAGAACAAAGCAAACATATGATATGC
GGGTAAGAACAAAGCAAACATATGATATGCACGTATTGGTGAAAAAGACCTCAATTCTTTACCT
CAATTGTGGTAAATTCAGGATTATGGCGAGTGGAAATGCCTTCATTCCGAAATATTCTCCCAAT
CTCATAAACTTTCTCAAGCCCTCCAACCTGCATTTTTTTTCAGTAGTACTAAATTTGTAAATAA
ATATAAAATAGCTAAACAGTATACAGTTCGCAAAAAATTATGTTATGGTAAGATTAACATGGCA
TAACAAGCATATGTGATACTTCCATTTCGATTAGTCAACATAGTAGTCAAATCTGATCCTTCTG
TACTCACAGGAATCATATTCACTACTATGTTGACTAATTGGAATCATATTCACTACTATGTTGA
CTAATTGAAATGGAAGTATCACAGAAATGAATACAGATACAGAGCAGGTTAAGAAAAAAGAGAT
AGCTGCCAAACTGAAGAATAAAAACTGAATAGTAACCTCACCAGCATCCTTTTCAAATGCAGCT
CTGTTGCAATCCTCAAGTAAAGATCTCTTTGCAGTGAGTTATGGTGGGTTATAAATGGTCTTGC
TTCAGCACCACCTGCTGCTCC
Conservation Information
Conserved circRNAs osi_circ_004113* osi_circ_012022 zma_circ_000924
PMCS 0.551354692
Functional Information
Coding potential Y
Potential coding position 24854643-24852001(+)
24854586-24851980(-)
24853869-24854652(-)
Potential amino acid sequence MVGYKWSCFSTTCCSLIENMSNR*(+)
MLVGGLEKVYEIGRIFRNEGISTRHNPEFTTIEMYEAYSDYESMMNLAEEIVTRCAMATHGKLR
VDYQGTEISLERPWRRETMHSLVKEATGIDFNSFGEDLESAKNAARGIKTESNENISLQACSSV
GHVLNEGAAGGAEARPFITHHNSLQRDLYLRIATELHLKRMLVGGLEKVYEIGRIFRNEGISTR
HNPEFTTIEMYEAYSDYESMMNLAEEIVTRCAMATHGKLRVDYQGTEISLERPWRRETMHSLVK
EATGIDFNSFGEDLESAKNAARGIKTESNENISLQACSSVGHVLNEGAAGGAEARPFITHHNSL
QRDLYLRIATELHLKRMLVGGLEKVYEIGRIFRNEGISTRHNPEFTTIEMYEAYSDYESMMNLA
EEIVTRCAMATHGKLRVDYQGTEISLERPWRRETMHSLVKEATGIDFNSFGEDLESAKNAARGI
KTESNENISLQACSSVGHVLNEGAAGGAEARPFITHHNSLQRDLYLRIATELHLKRMLVGGLEK
VYEIGRIFRNEGISTRHNPEFTTIEMYEAYSDYESMMNLAEEIVTRCAMATHGKLRVDYQGTEI
SLERPWRRETMHSLVKEATGIDFNSFGEDLESAKNAARGIKTESNENISLQACSSVGHVLNE(-
)
MANLGLIIRELKSPLKDHGGGKPCILLSKKQLELTLIALEKILNPPKMLQEGSKQRAMRISHCK
LVHLLDMFSMREQQVVLKQDHL*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015;Chu et al., 2017