Detail information of Os06g0175500_circ_g.8


General Information
CircRNA Name Os06g0175500_circ_g.8
ID in PlantcircBase osa_circ_029863
Alias NA
Organism Oryza sativa
Position chr6: 3802403-3802512  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os06g0175500
Parent gene annotation Epsin-like, N-terminal domain containing protein. (Os06t0175500-
01);Similar to predicted protein. (Os06t0175500-02)
Parent gene strand -
Alternative splicing Os06g0175500_circ_g.9
Support reads 3
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os06t0175500-02:1
Os06t0175500-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCCAGCTCCCAGCCAGTGACTCCATTTTGAGCAGGTGCAACTTTAGGTACATCATcagcttctt
gcttgaagtaatagcagtttcgtttgagctgggtgtggtgacaagg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGCTTCTTGCTTGAAGTAATAGCAGTTTCGTTTGAGCTGGGTGTGGTGACAAGGGCCAGCTCC
CAGCCAGTGACTCCATTTTGAGCAGGTGCAACTTTAGGTACATCAT
Conservation Information
Conserved circRNAs NA
PMCS 0.177273182
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017