Detail information of AT2G20580_circ_g.2


General Information
CircRNA Name AT2G20580_circ_g.2
ID in PlantcircBase ath_circ_014038
Alias 2:8859648-8861316
Organism Arabidpsis thaliana
Position chr2: 8859648-8861316  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G20580
Parent gene annotation RPN1A
Parent gene strand +
Alternative splicing AT2G20580_circ_g.1 AT2G20580_circ_g.3 AT2G20580_circ_g.4 AT2G20580_circ_g.5
Support reads 1/2
Tissues root;flower
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G20580.1:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTATGGTGTATTTTCTGTATTGCAGTATGTTAAACAAGTATTTACCTCATGTACGGATCTGCTG
AAGAAGAAACAGTTCTGCTACATGATTGCTCGTCATtctgaagaggacttggaactaaagcaga
accttgagctctatgttgagagggttcaggatcctaatccggaattgcagaaggctgcccttga
gagcatga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TCTGAAGAGGACTTGGAACTAAAGCAGAACCTTGAGCTCTATGTTGAGAGGGTTCAGGATCCTA
ATCCGGAATTGCAGAAGGCTGCCCTTGAGAGCATGAGGTAATTCTTGACTTGATCAGCTTCGGG
TTTTCAGATTATTGCCACTGAAGCTTGTACAACTTATAAAGCTTTTTTTCTTTCTCTCTGCTCT
TGGTGTACATGTTTATGTTTTTAATTAGAGTTTTATTTGGCTTTGTAGGCAGGAAATCCGAGCT
TCAACAAGTTCCATGACTTCAGTTCCCAAACCACTAAAGTTTCTGCGTCCCCATTATGGAACTC
TTAAAGCGTTTCATGAAACAATGGCTGATTCTGATCTCAAAGTATGTCATCATTGATTTCAAGT
CATTAACAATTCTTATATTGGTATGGCTTAAAAATTACATTTGCTATGTTTGCAGAAGTACCTG
TCCGATATCCTGTCTGTCCTGGCCCTTACCATGTCTGCAGATGGTGAAAGGGTATGCTTCTACT
GACTTGGGCATACTTTGTATTCTGATTTGTATTTTTTAAGGCATACTTTGAACTGCTAATCACT
TTCTTTTACAATATAATTCCAGGAAAGCTTAAGGTTTAGATTGATTGGAACAGAGGGTGACATT
GGATCGTGGGGTCATGAATATGTCAGGAATTTAGCTGGAGAGATTGCACAAGAGTATACAAAGC
GTCAGGTTAGAAATCAATTTTCGATTTTGTCTTTGGAAATTCAGTTTCTCGTCCTAGGACTTGT
GCAGATATTCTAAGATTGTTGGAAGTTGTGTTTGGGTTTATCCTTCTGAATTCTGATGGTTGGA
GTTTTGAGGAATGACTAAATGTGTCTTATTCAATGAGAAAGGTCACTGAGTCATATTTATCTAC
CTGTTCATTATCTCAGAGTGAGGAGGCCTCTATTGACGATTTAATGGAGCTTGTGCAACAAATT
GTTGCTTTTCACATGAAGGTGAATTCCTAAACTAATAGGGCTTGAGATTAGCACCTCTGCGATT
TATTTATTTCTAAACGATTTCATTTACTCCTTGCAGCATAATGCAGAAACCGAAGCTGTTGATC
TTTTAATGGATGTTGAGGATCTTGATCTCTTACTTGAGCATGTAGACAAAACAAATTTCAAGAG
GACATGCAACTATCTCACAAGTGCAGCTAGGTACTTTAAACATAGTCAATCCTATTTATTTTAT
TTTTCCTCACTCTTTGTTATTTGAACTGATCTTGTAGAAACAAGTGGTGAGCTTTGTTTATATT
TGCTTCCAAAAATCTCTCTGACGTCTTATATATTTGAATTTTCAGGTACCTTCCTGGACCAGAT
GACATGTTGGTTCTAGATATTTCCTACATGATTTACATGAAGTTTGAAGAGTATCCAAACGCTC
TGCAGATTGCACTATTTCTTGATAACACGCAGGTAGGACTTTAATCTTTCTATAGAACGTAGTT
TCATTTCATTCTTTCTGCGTGTGAAGCATTTGGAAAAATCAATCCTCTATGTTTTATTTCGAGT
ATTTGCGTAGACATTTTTGATATTTAATGTGCTGTATGGTGTATTTTCTGTATTGCAGTATGTT
AAACAAGTATTTACCTCATGTACGGATCTGCTGAAGAAGAAACAGTTCTGCTACATGATTGCTC
GTCAT
Conservation Information
Conserved circRNAs NA
PMCS 0.139331401
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs ath-miR779.1
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020