Plant Circular RNA Database

Detail information of Zm00001d052098_circ_g.1

			
						 General Information
					
						CircRNA Name
						Zm00001d052098_circ_g.1
					
						ID in PlantcircBase
						zma_circ_001772
					
						Alias
						circ2287
					
						Organism
						
							Zea mays						
					
						Position
						
							chr4: 179502634-179507253  JBrowse»						
					
						Reference genome
						
							AGPv4.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						CIRCexplor2
					
						Parent gene
						
							Zm00001d052098						
					
						Parent gene annotation
						
							Probable NOT transcription complex subunit VIP2
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Zm00001d052098_circ_g.2 Zm00001d052098_circ_g.3 Zm00001d052098_circ_g.4 						
					
						Support reads
						2
					
						Tissues
						seedling leaves
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-CA							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Zm00001d052098_T012:6
Zm00001d052098_T001:6
Zm00001d052098_T004:4
Zm00001d052098_T007:6
Zm00001d052098_T002:5
Zm00001d052098_T013:4
Zm00001d052098_T011:6
Zm00001d052098_T008:6
Zm00001d052098_T005:5
Zm00001d052098_T010:6
Zm00001d052098_T006:5
Zm00001d052098_T003:5

General Information
CircRNA Name	Zm00001d052098_circ_g.1
ID in PlantcircBase	zma_circ_001772
Alias	circ2287
Organism	Zea mays
Position	chr4: 179502634-179507253 JBrowse»
Reference genome	AGPv4.38
Type	u-circRNA
Identification method	CIRCexplor2
Parent gene	Zm00001d052098
Parent gene annotation	Probable NOT transcription complex subunit VIP2
Parent gene strand	+
Alternative splicing	Zm00001d052098_circ_g.2 Zm00001d052098_circ_g.3 Zm00001d052098_circ_g.4
Support reads	2
Tissues	seedling leaves
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-CA The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Zm00001d052098_T012:6 Zm00001d052098_T001:6 Zm00001d052098_T004:4 Zm00001d052098_T007:6 Zm00001d052098_T002:5 Zm00001d052098_T013:4 Zm00001d052098_T011:6 Zm00001d052098_T008:6 Zm00001d052098_T005:5 Zm00001d052098_T010:6 Zm00001d052098_T006:5 Zm00001d052098_T003:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TCACTGCGCAAGCAAGGAGTTGGTGTTAATACCCTTGTGCAACAAAACCAGGAATTCAGCATTC
AAAATGAAGACTTCCCGGCTTTGCCTGGATATAAAGggttggaagggtttgctgtatcatgcat
tttttgtggataatcttcattttctcttgagtcaccgattcttttgttgtcttcaaaatgtcgg
gcttgctg

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GGTTGGAAGGGTTTGCTGTATCATGCATTTTTTGTGGATAATCTTCATTTTCTCTTGAGTCACC
GATTCTTTTGTTGTCTTCAAAATGTCGGGCTTGCTGAACGTATGTACTTGCACAAGTATACTTG
CCATTGGGTTTTCTTGCCACCATTATGTATTCATGTTGAAAGGCAGGCCTGGTGTAGTGGTGAG
AGCTGTATCACTGAGTCACTAGGTCATGTGTTTGAAGCAGCCTCCGCATTTGTGGGGGAAGGAT
TGCTTCGATTTACCCCTTTTTCAGACCCCACTCATGCGGGACCCTCCAGCACTTGGTCTGCCCA
TTATGTATTTATATTCTTTCCATTTGTTTACCACATTGGGTCTAGAATGGATGTTTTTCTTTGG
TGAAAGATAAATTTCTACAACTTTAGTCGTCAGCAGACAAATCTTTTTAGAGATTTCATGCAAG
AGTTATATGAATGGAATCATCATCAAAACTACATTGCCAGTTGTCACAACAATATTTGTAATGT
TCGATATATGTTACTTATATTAGGTGAAGTCAAATTTGGGCACTGTTAGACAGCCATATTTTTA
ATGTTTGATATACTCCCTATGTCTTTTTGCCTGTTATGGCATTGTACTGTGGTCCACTTCGGAC
CTTTCTCTCTTTCAATATAATGATGCACAGTTCTCCTGCGCGTTCGAGAAAAAAAATGTTTGAT
ATACGGTACTTGTATTAGGTGGCAGTAAAGTTTGTGCACTGAGACTGTACCAACAGTTAAATCA
GGGAAGATGTATTGTTTTGTTGTGATCTGGTAGGTCATTTGCTTGTTTGTACACTCCTTTTTTT
TGTGGACAACAAATGAGTATTACATCTTGAACTCTTTGATGACTATCTCCTACTCAAACGTCTT
TAGGGGCCTGCTTATCTCAATATGGTTTGCAGTCTTAACTCAATATTATGTTTATTTTTTACTA
ACTCATTTTTTCCTTGGCAGTCAAACCTTAATAGTTCGGCATCAAATCTTTCAGACTCAGCTGG
AAGGCCATTTACAGCATCCTTTTCGGGTCAATCTGGATCAATTCCAGGTTTTCATCATTCTGGT
GAGCATATATATAATACAAAAACTTTTGTTAGTTCATTTATACTACATGGCAGACATTAAGTAA
GGTTTGTTTTCCTGACATTTTCAAAGGCTTGCATAACACTCATGGAAGTTACAATCTTCCGAGT
ATGCCTGGATCACTTGCACAAAGGAATGCTGCCATGAGTGGCCTTCCGTCCTCTGGGGTTCAAC
AACCTGGAGGTAGCATTCCTGGGAGATTCCCTTCAAACAACCTTCCAGTTGGCATGCCTCAGGT
TCTAATGCTCACCTTTATTCATATAGTGCAATTCATTTCCTTATTTGGTGGTAAACATACATGT
TCACTTTAATGTCTTATGGGATCCGAGAACCAATTTTTATAATTCAAATGTATGTGTTCTCTGT
CTGCACATCCATGTGGAGCAAGATGATTTATTGTGTGGTCCCTTTGCAGATTCCTCATGCACAT
TCAGGTGTCAGTGGTAGAGGGATGAATTTTGGCGCAGGTCCGGCATTTAGTAGCAGCATGAATA
TTGGTGGTAACATCCAAGGCTTATCCTCGGGCTTGGGCTCCGGTGGTAATCGCAATTCTGTTCA
TGGGATGCCAGTATCTTCATCTATAGGAAACTCGGGTCAACGGATAAGTTCTGTAGGAAATATG
GTAAGTGCAAGCAATATTGGAAGAAATATAGGCACTGGTGGTTTGTCCGTGCCAAGTATTGCAT
CACGAATCAATTTGAATGGTAGTGGTGGGAGTGGTAGTCTGAATGTGCAAGGATCCAGTCGAAT
GATGAATGGATTGCTTCATCAACAAGGTAATTGATTACATGTACCCATAAACAAGTGAAATGTT
ATATTTTTTAATAGATTTAGCTGGACTCCATGTGCTATGGTTGGCTGGCTTGTTTCTGGTCAGT
TGTAGCATCAACTCTTTAACATTTTGAATATGTTGGTTGTCCACTTGCTTCATTTCTTGCTCTA
AGATTCAAGCAGAACACCCACTTTTCAACTTTTTTCTTGGCATTAAAATTTGGCGATGAGAAAT
AAGCAGCCCACTGCTCCATAATCCATATGATGTAATTATCTTTTGTAGCCTTTTGAATCAGCAT
GTAGGTATTGCTAGTTTTGCTTTGTGGGAATATGTAGTGCTAGAGAGTTTTAAATTTCTAGCCT
TTTGAATCAGCATGTAGCCTCATGAAAGTTTCCCCGGCTATACCAAGTTCTGAACATTTGACAT
GCAGTTCAACTCATGACCCCAAATGTATATAGCATAACAGTATCCTGATCATGATAAAAGCTTG
TTCATTTTTTATTTGTATAATTGTGAAACAAGCATTAAGGATGAAACAGAGCACCTCTTAGGGA
AGGAGGATGAGATCAGACATATATGGTGAGAGTATTTTGGCAAATTGTTCAACGGGGAGAATGG
GGATACAATCTTTCACTTAGACGACTCTTTTGATGACACCAATATACACTTAGTGCGTAGGACC
CAAGAATTTGAGGTTAGAGGCATTGAAAAGGATGAAAGGGAGTAAGGCGAGGGGCCCTGATGGT
TTCTTAATTGAGACATGGAGACACCTCAAGGACACATTTATAGTAGGGCTAACCAAGTTATTCA
ACCATATCTGCCGATTAAACAAGATGACTAACGAATGGAGAAGTATATTGGTATCGATCTACGA
AAGTAAGGGAGATATTCAAAGTTGTACTAATTATTGGAGAAATTATTTGATTAGCCATACTATG
AAGCTATGGGGGAGAGTTACCGAACATTGTCTGAAAGGAATGATGAGGATATCTATGAACCAAT
TTGGTTTCATGCCCGAAAGGTCAACCATGAAAACCATTTTCTTAATAAGACAAGTGATAGGGCA
TTATAGGGAGCAGAAGGACATGCACATGTTTTTCATTGACTTGGAGGATGCTTACAACAGAATA
CTATGGAAATAATGGAATATTATTTGGTGGGCTTTAGAGAAATATAAAATTCCAATGAAGTATG
TTTGACTCATTAAGGACATGTACAACAATGTTGTGACTAGTGTTCAAACAAGTGATGGAGACAT
AGATGACTTTTCGATTAGAATAAGATTACATCAAGTATCAGTTTTGACTTTTGAGCCCTTACTT
TTTTCCTTAGTGATGGATAATGTCACAAGGGACATACAAGGGGGTATCACTTCGTGTATGTTTT
TTGCGGATGATGTAGTGCTAGTTGATGAAAGTTGGGTAGGAGTAAATATGAAACTACAAAACTA
GAGTTGTGGTGGGAGACTCTAGAGTCAAAGGTTTTCGACTCGGTAGAACTGAAACTGAATATAC
AAGATGTGACTTCAACGTTACTACTCACGAGGAAGGATATGTTAGTTTGGAAGATCAAGTAGTG
CCAAGGATGGATACCTTTCAGTATTTAGGATCAATGCTATAGAAAGATATGGATATTTATGATA
TTAGACGTAGAATCAAAGCAGGGTGGATGAAGTGGTATCAAATGGCGTTCTATATGACTAGAGG
CCAAGTGGGTACCACAGAAGCTAAAAAGACAAGTTTTATAGGACAATGATTAGACCTGCTATGC
TGTATGATACGGAATATCGGTCTACAAAAAGATGACATATTCAATAGAGAAGTTTTGTTGAAAT
GCTTATGTTGTGTTGGATCTATGGCCATACAAGAAGGGATCAAGTCCAAAACGATGCTATACAT
GGTAGGCTAGAGGTTGCACCAATTGAATTTTTTTTTGTCCAACATCGATTGAGATGGTTTGAAC
ATGCCCAATGGAGACCTCCAAGAGGCACCATTGTGTAGTTGAAATTTAAGACATGATAGCAATG
ACCAATGGGAAGATAGATAGAGAGGAAGATCAAGATCAATGTGGGAAGAGGCAGTAAAAGGAGA
CTTGAAGGGTTGGAATATAACTAAAGATTTAGCCTTGAATAAGAGTGCATGAAAAGTAGCTATC
CACGTGCATGAAGCCATGAACCTTTGAGTTGTGGTTTTTGTTGGGTTTCAACTCTAGCTTACCC
CAACTTGTTTGGAACAAAAAAAGCTTTGATATTGTGAAACAAGCCTTCAAAAATTCTGATGGTT
AAGAAGTGTGCTGTTTATTACGTATCTGTTTATCAGAGTGCATGTCTCATCCAGCTTTTTTAAT
CTCTGAAACCAGCAACTCCTCAGTTGATAAATATGCTTGGAAGTTCATATCCAACATCTGGAGG
TTCATTATCACAGAGCCAAATTCAAGCAGGAAATAATTCTTTTAGTTCTATGGGGATGTTGCAT
GATGCCAGTGACACTGCTCCATTTGACATAAATGATTTTCCCCAATTGTCTGGTCGACCTAGTT
CTGCTGGTGGTCCGCAAGGACAATATGGTAAGAATGCTGGAAACTAATATATTTCTTAATTATT
ATTTGGATATTGATTTAGCTAATTTCTTTAAATTACAGGATCACTGCGCAAGCAAGGAGTTGGT
GTTAATACCCTTGTGCAACAAAACCAGGAATTCAGCATTCAAAATGAAGACTTCCCGGCTTTGC
CTGGATATAAAG
						
					

			
		

Sequences
Splice junction sequence	TCACTGCGCAAGCAAGGAGTTGGTGTTAATACCCTTGTGCAACAAAACCAGGAATTCAGCATTC AAAATGAAGACTTCCCGGCTTTGCCTGGATATAAAGggttggaagggtttgctgtatcatgcat tttttgtggataatcttcattttctcttgagtcaccgattcttttgttgtcttcaaaatgtcgg gcttgctg
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GGTTGGAAGGGTTTGCTGTATCATGCATTTTTTGTGGATAATCTTCATTTTCTCTTGAGTCACC GATTCTTTTGTTGTCTTCAAAATGTCGGGCTTGCTGAACGTATGTACTTGCACAAGTATACTTG CCATTGGGTTTTCTTGCCACCATTATGTATTCATGTTGAAAGGCAGGCCTGGTGTAGTGGTGAG AGCTGTATCACTGAGTCACTAGGTCATGTGTTTGAAGCAGCCTCCGCATTTGTGGGGGAAGGAT TGCTTCGATTTACCCCTTTTTCAGACCCCACTCATGCGGGACCCTCCAGCACTTGGTCTGCCCA TTATGTATTTATATTCTTTCCATTTGTTTACCACATTGGGTCTAGAATGGATGTTTTTCTTTGG TGAAAGATAAATTTCTACAACTTTAGTCGTCAGCAGACAAATCTTTTTAGAGATTTCATGCAAG AGTTATATGAATGGAATCATCATCAAAACTACATTGCCAGTTGTCACAACAATATTTGTAATGT TCGATATATGTTACTTATATTAGGTGAAGTCAAATTTGGGCACTGTTAGACAGCCATATTTTTA ATGTTTGATATACTCCCTATGTCTTTTTGCCTGTTATGGCATTGTACTGTGGTCCACTTCGGAC CTTTCTCTCTTTCAATATAATGATGCACAGTTCTCCTGCGCGTTCGAGAAAAAAAATGTTTGAT ATACGGTACTTGTATTAGGTGGCAGTAAAGTTTGTGCACTGAGACTGTACCAACAGTTAAATCA GGGAAGATGTATTGTTTTGTTGTGATCTGGTAGGTCATTTGCTTGTTTGTACACTCCTTTTTTT TGTGGACAACAAATGAGTATTACATCTTGAACTCTTTGATGACTATCTCCTACTCAAACGTCTT TAGGGGCCTGCTTATCTCAATATGGTTTGCAGTCTTAACTCAATATTATGTTTATTTTTTACTA ACTCATTTTTTCCTTGGCAGTCAAACCTTAATAGTTCGGCATCAAATCTTTCAGACTCAGCTGG AAGGCCATTTACAGCATCCTTTTCGGGTCAATCTGGATCAATTCCAGGTTTTCATCATTCTGGT GAGCATATATATAATACAAAAACTTTTGTTAGTTCATTTATACTACATGGCAGACATTAAGTAA GGTTTGTTTTCCTGACATTTTCAAAGGCTTGCATAACACTCATGGAAGTTACAATCTTCCGAGT ATGCCTGGATCACTTGCACAAAGGAATGCTGCCATGAGTGGCCTTCCGTCCTCTGGGGTTCAAC AACCTGGAGGTAGCATTCCTGGGAGATTCCCTTCAAACAACCTTCCAGTTGGCATGCCTCAGGT TCTAATGCTCACCTTTATTCATATAGTGCAATTCATTTCCTTATTTGGTGGTAAACATACATGT TCACTTTAATGTCTTATGGGATCCGAGAACCAATTTTTATAATTCAAATGTATGTGTTCTCTGT CTGCACATCCATGTGGAGCAAGATGATTTATTGTGTGGTCCCTTTGCAGATTCCTCATGCACAT TCAGGTGTCAGTGGTAGAGGGATGAATTTTGGCGCAGGTCCGGCATTTAGTAGCAGCATGAATA TTGGTGGTAACATCCAAGGCTTATCCTCGGGCTTGGGCTCCGGTGGTAATCGCAATTCTGTTCA TGGGATGCCAGTATCTTCATCTATAGGAAACTCGGGTCAACGGATAAGTTCTGTAGGAAATATG GTAAGTGCAAGCAATATTGGAAGAAATATAGGCACTGGTGGTTTGTCCGTGCCAAGTATTGCAT CACGAATCAATTTGAATGGTAGTGGTGGGAGTGGTAGTCTGAATGTGCAAGGATCCAGTCGAAT GATGAATGGATTGCTTCATCAACAAGGTAATTGATTACATGTACCCATAAACAAGTGAAATGTT ATATTTTTTAATAGATTTAGCTGGACTCCATGTGCTATGGTTGGCTGGCTTGTTTCTGGTCAGT TGTAGCATCAACTCTTTAACATTTTGAATATGTTGGTTGTCCACTTGCTTCATTTCTTGCTCTA AGATTCAAGCAGAACACCCACTTTTCAACTTTTTTCTTGGCATTAAAATTTGGCGATGAGAAAT AAGCAGCCCACTGCTCCATAATCCATATGATGTAATTATCTTTTGTAGCCTTTTGAATCAGCAT GTAGGTATTGCTAGTTTTGCTTTGTGGGAATATGTAGTGCTAGAGAGTTTTAAATTTCTAGCCT TTTGAATCAGCATGTAGCCTCATGAAAGTTTCCCCGGCTATACCAAGTTCTGAACATTTGACAT GCAGTTCAACTCATGACCCCAAATGTATATAGCATAACAGTATCCTGATCATGATAAAAGCTTG TTCATTTTTTATTTGTATAATTGTGAAACAAGCATTAAGGATGAAACAGAGCACCTCTTAGGGA AGGAGGATGAGATCAGACATATATGGTGAGAGTATTTTGGCAAATTGTTCAACGGGGAGAATGG GGATACAATCTTTCACTTAGACGACTCTTTTGATGACACCAATATACACTTAGTGCGTAGGACC CAAGAATTTGAGGTTAGAGGCATTGAAAAGGATGAAAGGGAGTAAGGCGAGGGGCCCTGATGGT TTCTTAATTGAGACATGGAGACACCTCAAGGACACATTTATAGTAGGGCTAACCAAGTTATTCA ACCATATCTGCCGATTAAACAAGATGACTAACGAATGGAGAAGTATATTGGTATCGATCTACGA AAGTAAGGGAGATATTCAAAGTTGTACTAATTATTGGAGAAATTATTTGATTAGCCATACTATG AAGCTATGGGGGAGAGTTACCGAACATTGTCTGAAAGGAATGATGAGGATATCTATGAACCAAT TTGGTTTCATGCCCGAAAGGTCAACCATGAAAACCATTTTCTTAATAAGACAAGTGATAGGGCA TTATAGGGAGCAGAAGGACATGCACATGTTTTTCATTGACTTGGAGGATGCTTACAACAGAATA CTATGGAAATAATGGAATATTATTTGGTGGGCTTTAGAGAAATATAAAATTCCAATGAAGTATG TTTGACTCATTAAGGACATGTACAACAATGTTGTGACTAGTGTTCAAACAAGTGATGGAGACAT AGATGACTTTTCGATTAGAATAAGATTACATCAAGTATCAGTTTTGACTTTTGAGCCCTTACTT TTTTCCTTAGTGATGGATAATGTCACAAGGGACATACAAGGGGGTATCACTTCGTGTATGTTTT TTGCGGATGATGTAGTGCTAGTTGATGAAAGTTGGGTAGGAGTAAATATGAAACTACAAAACTA GAGTTGTGGTGGGAGACTCTAGAGTCAAAGGTTTTCGACTCGGTAGAACTGAAACTGAATATAC AAGATGTGACTTCAACGTTACTACTCACGAGGAAGGATATGTTAGTTTGGAAGATCAAGTAGTG CCAAGGATGGATACCTTTCAGTATTTAGGATCAATGCTATAGAAAGATATGGATATTTATGATA TTAGACGTAGAATCAAAGCAGGGTGGATGAAGTGGTATCAAATGGCGTTCTATATGACTAGAGG CCAAGTGGGTACCACAGAAGCTAAAAAGACAAGTTTTATAGGACAATGATTAGACCTGCTATGC TGTATGATACGGAATATCGGTCTACAAAAAGATGACATATTCAATAGAGAAGTTTTGTTGAAAT GCTTATGTTGTGTTGGATCTATGGCCATACAAGAAGGGATCAAGTCCAAAACGATGCTATACAT GGTAGGCTAGAGGTTGCACCAATTGAATTTTTTTTTGTCCAACATCGATTGAGATGGTTTGAAC ATGCCCAATGGAGACCTCCAAGAGGCACCATTGTGTAGTTGAAATTTAAGACATGATAGCAATG ACCAATGGGAAGATAGATAGAGAGGAAGATCAAGATCAATGTGGGAAGAGGCAGTAAAAGGAGA CTTGAAGGGTTGGAATATAACTAAAGATTTAGCCTTGAATAAGAGTGCATGAAAAGTAGCTATC CACGTGCATGAAGCCATGAACCTTTGAGTTGTGGTTTTTGTTGGGTTTCAACTCTAGCTTACCC CAACTTGTTTGGAACAAAAAAAGCTTTGATATTGTGAAACAAGCCTTCAAAAATTCTGATGGTT AAGAAGTGTGCTGTTTATTACGTATCTGTTTATCAGAGTGCATGTCTCATCCAGCTTTTTTAAT CTCTGAAACCAGCAACTCCTCAGTTGATAAATATGCTTGGAAGTTCATATCCAACATCTGGAGG TTCATTATCACAGAGCCAAATTCAAGCAGGAAATAATTCTTTTAGTTCTATGGGGATGTTGCAT GATGCCAGTGACACTGCTCCATTTGACATAAATGATTTTCCCCAATTGTCTGGTCGACCTAGTT CTGCTGGTGGTCCGCAAGGACAATATGGTAAGAATGCTGGAAACTAATATATTTCTTAATTATT ATTTGGATATTGATTTAGCTAATTTCTTTAAATTACAGGATCACTGCGCAAGCAAGGAGTTGGT GTTAATACCCTTGTGCAACAAAACCAGGAATTCAGCATTCAAAATGAAGACTTCCCGGCTTTGC CTGGATATAAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.028226355

Conservation Information
Conserved circRNAs	NA
PMCS	0.028226355

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							179502720-179502671(+)
179507018-179503621(+)
179502786-179507218(-)
179502767-179507211(-)
						
						Potential amino acid sequence
						
							MSGLLNVCTCTSILAIGFSCHHYVFMLKGRPGVVSNLNSSASNLSDSAGRPFTASFSGQSGSIP
GFHHSGLHNTHGSYNLPSMPGSLAQRNAAMSGLPSSGVQQPGGSIPGRFPSNNLPVGMPQIPHA
HSGVSGRGMNFGAGPAFSSSMNIGGNIQGLSSGLGSGGNRNSVHGMPVSSSIGNSGQRISSVGN
MVSASNIGRNIGTGGLSVPSIASRINLNGSGGSGSLNVQGSSRMMNGLLHQQATPQLINMLGSS
YPTSGGSLSQSQIQAGNNSFSSMGMLHDASDTAPFDINDFPQLSGRPSSAGGPQGQYGSLRKQG
VGVNTLVQQNQEFSIQNEDFPALPGYKGLEGFAVSCIFCG*(+)
MIFPNCLVDLVLLVVRKDNMDHCASKELVLIPLCNKTRNSAFKMKTSRLCLDIKGWKGLLYHAF
FVDNLHFLLSHRFFCCLQNVGLAERMYLHKYTCHWVFLPPLCIHVERQAWCSVKP*(+)
MVARKPNGKYTCASTYVQQARHFEDNKRIGDSRENEDYPQKMHDTANPSNPLYPGKAGKSSF*(
-)
MASILVQVHTFSKPDILKTTKESVTQEKMKIIHKKCMIQQTLPTLYIQAKPGSLHFEC*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	179502720-179502671(+) 179507018-179503621(+) 179502786-179507218(-) 179502767-179507211(-)
Potential amino acid sequence	MSGLLNVCTCTSILAIGFSCHHYVFMLKGRPGVVSNLNSSASNLSDSAGRPFTASFSGQSGSIP GFHHSGLHNTHGSYNLPSMPGSLAQRNAAMSGLPSSGVQQPGGSIPGRFPSNNLPVGMPQIPHA HSGVSGRGMNFGAGPAFSSSMNIGGNIQGLSSGLGSGGNRNSVHGMPVSSSIGNSGQRISSVGN MVSASNIGRNIGTGGLSVPSIASRINLNGSGGSGSLNVQGSSRMMNGLLHQQATPQLINMLGSS YPTSGGSLSQSQIQAGNNSFSSMGMLHDASDTAPFDINDFPQLSGRPSSAGGPQGQYGSLRKQG VGVNTLVQQNQEFSIQNEDFPALPGYKGLEGFAVSCIFCG(+) MIFPNCLVDLVLLVVRKDNMDHCASKELVLIPLCNKTRNSAFKMKTSRLCLDIKGWKGLLYHAF FVDNLHFLLSHRFFCCLQNVGLAERMYLHKYTCHWVFLPPLCIHVERQAWCSVKP(+) MVARKPNGKYTCASTYVQQARHFEDNKRIGDSRENEDYPQKMHDTANPSNPLYPGKAGKSSF( -) MASILVQVHTFSKPDILKTTKESVTQEKMKIIHKKCMIQQTLPTLYIQAKPGSLHFEC(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chen et al., 2017b

circRNA

Detail information of Zm00001d052098_circ_g.1

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