Detail information of AT2G03150_circ_g.10


General Information
CircRNA Name AT2G03150_circ_g.10
ID in PlantcircBase ath_circ_012657
Alias At_ciR1565
Organism Arabidpsis thaliana
Position chr2: 957780-958235  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ
Parent gene AT2G03150
Parent gene annotation ATP/GTP-binding protein family
Parent gene strand +
Alternative splicing AT2G03150_circ_g.11 AT2G03150_circ_g.12
Support reads 7
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G03150.1:1
AT2G03150.2:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGATCCTGAAGAAGACCCTGAAGAAGATCCGGAAGAAGATCCAGAAGAATGCGAGGAAATGGAC
GTTGCAAATACTGAGCAAGAAGAGCCTGCTGAAGAGaaactacgtgtaaaaattgtgaggcaaa
gaaatcaacggaagaggcatcaggaggagttgtctgtcaagcaaaacgaagcaaaatcccaaga
taagcgtc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AAACTACGTGTAAAAATTGTGAGGCAAAGAAATCAACGGAAGAGGCATCAGGAGGAGTTGTCTG
TCAAGCAAAACGAAGCAAAATCCCAAGATAAGCGTCAAAAGACAGCTGAACATGAAGACAAGGA
AGCCTCGGTGATAAGCGAATCTGCTCCTGGGAAGGATGATAAAGAAACTTCAGGCAAGGAAACC
GTGGACGGTAGCCGGGAAATTGCAGATAAGGAAGCTGTAGCAAAGACCAAAGAAACTTTGGGCA
GTAAAGAAGTTACTGTGGGTGAAGCTGTTAATATGGAAGTGGAGAATCAGGATGAGGAGGATGA
CGATGGTGATGACGACCCAGAGGAAGATCCTGAGGAGGATCCTGAAGAAGACCCTGAAGAAGAT
CCGGAAGAAGATCCAGAAGAATGCGAGGAAATGGACGTTGCAAATACTGAGCAAGAAGAGCCTG
CTGAAGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.14546705
Functional Information
Coding potential Y
Potential coding position 958068-958232(+)
Potential amino acid sequence MEVENQDEEDDDGDDDPEEDPEEDPEEDPEEDPEEDPEECEEMDVANTEQEEPAEEKLRVKIVR
QRNQRKRHQEELSVKQNEAKSQDKRQKTAEHEDKEASVISESAPGKDDKETSGKETVDGSREIA
DKEAVAKTKETLGSKEVTVGEAVNMEVENQDEEDDDGDDDPEEDPEEDPEEDPEEDPEEDPEEC
EEMDVANTEQEEPAEEKLRVKIVRQRNQRKRHQEELSVKQNEAKSQDKRQKTAEHEDKEASVIS
ESAPGKDDKETSGKETVDGSREIADKEAVAKTKETLGSKEVTVGEAVNMEVENQDEEDDDGDDD
PEEDPEEDPEEDPEEDPEEDPEECEEMDVANTEQEEPAEEKLRVKIVRQRNQRKRHQEELSVKQ
NEAKSQDKRQKTAEHEDKEASVISESAPGKDDKETSGKETVDGSREIADKEAVAKTKETLGSKE
VTVGEAVNMEVENQDEEDDDGDDDPEEDPEEDPEEDPEEDPEEDPEECEEMDVANTEQEEPAEE
(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015