Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT2G03150_circ_g.10 |
ID in PlantcircBase | ath_circ_012657 |
Alias | At_ciR1565 |
Organism | Arabidpsis thaliana |
Position | chr2: 957780-958235 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | AT2G03150 |
Parent gene annotation |
ATP/GTP-binding protein family |
Parent gene strand | + |
Alternative splicing | AT2G03150_circ_g.11 AT2G03150_circ_g.12 |
Support reads | 7 |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT2G03150.1:1 AT2G03150.2:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.14546705 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
958068-958232(+) |
Potential amino acid sequence |
MEVENQDEEDDDGDDDPEEDPEEDPEEDPEEDPEEDPEECEEMDVANTEQEEPAEEKLRVKIVR QRNQRKRHQEELSVKQNEAKSQDKRQKTAEHEDKEASVISESAPGKDDKETSGKETVDGSREIA DKEAVAKTKETLGSKEVTVGEAVNMEVENQDEEDDDGDDDPEEDPEEDPEEDPEEDPEEDPEEC EEMDVANTEQEEPAEEKLRVKIVRQRNQRKRHQEELSVKQNEAKSQDKRQKTAEHEDKEASVIS ESAPGKDDKETSGKETVDGSREIADKEAVAKTKETLGSKEVTVGEAVNMEVENQDEEDDDGDDD PEEDPEEDPEEDPEEDPEEDPEECEEMDVANTEQEEPAEEKLRVKIVRQRNQRKRHQEELSVKQ NEAKSQDKRQKTAEHEDKEASVISESAPGKDDKETSGKETVDGSREIADKEAVAKTKETLGSKE VTVGEAVNMEVENQDEEDDDGDDDPEEDPEEDPEEDPEEDPEEDPEECEEMDVANTEQEEPAEE (+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015 |