Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d019627_circ_g.3 |
ID in PlantcircBase | zma_circ_009267 |
Alias | zma_circ_0002721 |
Organism | Zea mays |
Position | chr7: 46627887-46646529 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d019627 |
Parent gene annotation |
ABC transporter B family member 28 |
Parent gene strand | + |
Alternative splicing | Zm00001d019627_circ_g.1 Zm00001d019627_circ_g.2 Zm00001d019627_circ_g.4 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d019627_T002:5 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.15571864 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
46627978-46646526(+) |
Potential amino acid sequence |
MALYILGGRKVNAGKLSVGTMVSFIGYTFTLTFAVQGAVNTLGDLRGTLASVERINSILSAKDI DDSLAYGLAKELDGKEFDDSNGVYENGSVNKHFMSELKSSSSCSNLAWSGDIRLKEVHFSYPLR SNVEILNGLDLTIECGKVTALVGPSGAGKSTVVQLLARYYEPTQGSITVAGEDIRVFDKREWSR VVSLVNQAHAYQNNGTKLGVLKSANESLTRVVVYVSLMALYILGGRKVNAGKLSVGTMVSFIGY TFTLTFAVQGAVNTLGDLRGTLASVERINSILSAKDIDDSLAYGLAKELDGKEFDDSNGVYENG SVNKHFMSELKSSSSCSNLAWSGDIRLKEVHFSYPLRSNVEILNGLDLTIECGKVTALVGPSGA GKSTVVQLLARYYEPTQGSITVAGEDIRVFDKREWSRVVSLVNQAHAYQNNGTKLGVLKSANES LTRVVVYVSLMALYILGGRKVNAGKLSVGTMVSFIGYTFTLTFAVQGAVNTLGDLRGTLASVER INSILSAKDIDDSLAYGLAKELDGKEFDDSNGVYENGSVNKHFMSELKSSSSCSNLAWSGDIRL KEVHFSYPLRSNVEILNGLDLTIECGKVTALVGPSGAGKSTVVQLLARYYEPTQGSITVAGEDI RVFDKREWSRVVSLVNQAHAYQNNGTKLGVLKSANESLTRVVVYVSLMALYILGGRKVNAGKLS VGTMVSFIGYTFTLTFAVQGAVNTLGDLRGTLASVERINSILSAKDIDDSLAYGLAKELDGKEF DDSNGVYENGSVNKHFMSELKSSSSCSNLAWSGDIRLKEVHFSYPLRSNVEILNGLDLTIECGK VTALVGPSGAGKSTVVQLLARYYEPTQGSITVAGEDIRVFDKREWSRVVSLVNQ(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |