Detail information of Os03g0834000_circ_g.3


General Information
CircRNA Name Os03g0834000_circ_g.3
ID in PlantcircBase osa_circ_022600
Alias Os_ciR5375
Organism Oryza sativa
Position chr3: 35048011-35048435  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method find_circ
Parent gene Os03g0834000
Parent gene annotation Flap endonuclease-1b (EC 3.-.-.-) (OsFEN-1b). (Os03t0834000-01);
Similar to Flap endonuclease 1b. (Os03t0834000-02)
Parent gene strand +
Alternative splicing Os03g0834000_circ_g.1 Os03g0834000_circ_g.2
Support reads 3
Tissues root
Exon boundary   Yes-No
Splicing signals   GT-AG
Number of exons covered Os03t0834000-01:3
Os03t0834000-02:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAGCAAAAGGACTGTAAAGGTAATTACCTACGTTTGGGGGAAGTGAGCCAATCAAAAGTTTTTA
CAGTAACTTTAGGAAATACTTCCTCCGTTTCACAATttttgtgtttgatggtgagccacctgac
atgaagaaaaaggaactggcaaaaaggtatactctgaatagtgcctttgctttgattgtttctt
gtgagtgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTTTGTGTTTGATGGTGAGCCACCTGACATGAAGAAAAAGGAACTGGCAAAAAGGTATACTCTG
AATAGTGCCTTTGCTTTGATTGTTTCTTGTGAGTGTCAGTATTTTTATTTCCTATGTTTACCAC
TCTTTAGGTCTTTGAAGAGAGATGGTTCTTCCGAAGATCTAAATAGAGCTATTGAGGTCATCTG
ATCCTAACCGTAGTACTATTGCCTCCTTCTTATTGTACCTTTTTACTTTTGGGGTGATTTATCT
GTTATTGCATTGCACCTCTGAGGCAGCATTTATGTTACAGGTTGGAGATGAGGATTTAATTGAA
AAATTTAGCAAAAGGACTGTAAAGGTAATTACCTACGTTTGGGGGAAGTGAGCCAATCAAAAGT
TTTTACAGTAACTTTAGGAAATACTTCCTCCGTTTCACAAT
Conservation Information
Conserved circRNAs osi_circ_013854
PMCS 0.25441098
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015