Detail information of Os04g0568800_circ_ig.1


General Information
CircRNA Name Os04g0568800_circ_ig.1
ID in PlantcircBase osa_circ_041845
Alias NA
Organism Oryza sativa
Position chr4: 28588850-28589130  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method CIRI-long
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os04g0568800_circ_ag.1 Os04g0568800_circ_g.2 Os04g0568800_circ_g.3 Os04g0568800_circ_igg.1
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTCACAGATAAAAATAAGAATATAGAATGAAACTTTTTTTTGTTAAACTAGTGAAAAATAAACA
GTACAGAACTTGGTGAAAGAGACCTTGCCTCCATTTtgagtttgctccacagttaacagtattc
acttgccttgtaatcaggacaaacaaaaaaaaaggctccaaatgattaacgaacaacaaaaata
tgaaaaat
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 281
Transcript exons: 28588850-28589130
TGAGTTTGCTCCACAGTTAACAGTATTCACTTGCCTTGTAATCAGGACAAACAAAAAAAAAGGC
TCCAAATGATTAACGAACAACAAAAATATGAAAAATAATCTAGTTGAAACAATAAGAGAGTACA
ACTCGTGCGTTGACATTTGGCAAGCATGTGAACATAAATACTTTGCTATCATTGTCACAGATAA
AAATAAGAATATAGAATGAAACTTTTTTTTGTTAAACTAGTGAAAAATAAACAGTACAGAACTT
GGTGAAAGAGACCTTGCCTCCATTT

Genomic sequence TGAGTTTGCTCCACAGTTAACAGTATTCACTTGCCTTGTAATCAGGACAAACAAAAAAAAAGGC
TCCAAATGATTAACGAACAACAAAAATATGAAAAATAATCTAGTTGAAACAATAAGAGAGTACA
ACTCGTGCGTTGACATTTGGCAAGCATGTGAACATAAATACTTTGCTATCATTGTCACAGATAA
AAATAAGAATATAGAATGAAACTTTTTTTTGTTAAACTAGTGAAAAATAAACAGTACAGAACTT
GGTGAAAGAGACCTTGCCTCCATTT
Conservation Information
Conserved circRNAs NA
PMCS 0.456137994
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study