Detail information of Os01g0191300_circ_g.3


General Information
CircRNA Name Os01g0191300_circ_g.3
ID in PlantcircBase osa_circ_000657
Alias Os01circ04894/Os_ciR737,
Organism Oryza sativa
Position chr1: 4881888-4883265  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer, CIRI, KNIFE, PcircRNA_finder, SMALT, Segemehl, circRNA_finder, circseq_cup, find_circ, CIRI-long
Parent gene Os01g0191300
Parent gene annotation Similar to NAC-type transcription factor. (Os01t0191300-01);Simi
lar to NAC-type transcription factor. (Os01t0191300-02);Similar
to NAC-type transcription factor. (Os01t0191300-03)
Parent gene strand -
Alternative splicing Os01g0191300_circ_g.2 Os01g0191300_circ_g.4 Os01g0191300_circ_g.5 Os01g0191300_circ_g.6
Support reads 10/46/9/14
Tissues leaf and panicle/root/root/shoot, root, seed, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os01t0191300-02:2
Os01t0191300-01:2
Os01t0191300-03:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGCAAGCAACGGCCGGTGCGGCTGTTGTTCCTGGCCAGCATGCTGCTGCTCCGACCTCCCAAG
CTGATTGGAGTGTACCTGATCACCACTTATACCAACtccttttgtgctcgaagacgtgcagccc
attatcagttcctccaagccggcagacctcctgtcaagcttttgttgctgctgctgctgtgttg
catgttcg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 155
Transcript exons: 4881888-4881971,4883195-4883265
TCCTTTTGTGCTCGAAGACGTGCAGCCCATTATCAGTTCCTCCAAGCCGGCAGACCTCCTGTCA
AGCTTTTGTTGCTGCTGCTGTCCTGGCCAGCATGCTGCTGCTCCGACCTCCCAAGCTGATTGGA
GTGTACCTGATCACCACTTATACCAAC

Transcript length: 191
Transcript exons: 4881888-4881964,4883152-4883265
TCCTTTTGTGCTCGAAGACGTGCAGCCCATTATCAGTTCCTCCAAGCCGGCAGACCTCCTGTCA
AGCTTTTGTTGCTCACCGCCGTCGTGGTTGCAAGCAACGGCCGGTGCGGCTGTTGTTCCTGGCC
AGCATGCTGCTGCTCCGACCTCCCAAGCTGATTGGAGTGTACCTGATCACCACTTATACCAAC

Transcript length: 195
Transcript exons: 4881888-4881920,4883104-4883265
TCCTTTTGTGCTCGAAGACGTGCAGCCCATTATATTTGATACAGGGTTCGTCGGCCGGCTGATC
AGGAAGGCCGTGGCAGGCACCGCCGTCGTGGTTGCAAGCAACGGCCGGTGCGGCTGTTGTTCCT
GGCCAGCATGCTGCTGCTCCGACCTCCCAAGCTGATTGGAGTGTACCTGATCACCACTTATACC
AAC

Transcript length: 204
Transcript exons: 4881888-4881937,4883112-4883265
TCCTTTTGTGCTCGAAGACGTGCAGCCCATTATCAGTTCCTCCAAGCCGGCAGGGTTCGTCGGC
CGGCTGATCAGGAAGGCCGTGGCAGGCACCGCCGTCGTGGTTGCAAGCAACGGCCGGTGCGGCT
GTTGTTCCTGGCCAGCATGCTGCTGCTCCGACCTCCCAAGCTGATTGGAGTGTACCTGATCACC
ACTTATACCAAC

Transcript length: 229
Transcript exons: 4881888-4881954,4883104-4883265
TCCTTTTGTGCTCGAAGACGTGCAGCCCATTATCAGTTCCTCCAAGCCGGCAGACCTCCTGTCA
AGCATTTGATACAGGGTTCGTCGGCCGGCTGATCAGGAAGGCCGTGGCAGGCACCGCCGTCGTG
GTTGCAAGCAACGGCCGGTGCGGCTGTTGTTCCTGGCCAGCATGCTGCTGCTCCGACCTCCCAA
GCTGATTGGAGTGTACCTGATCACCACTTATACCAAC

Transcript length: 309
Transcript exons: 4881888-4881965,4883035-4883265
TCCTTTTGTGCTCGAAGACGTGCAGCCCATTATCAGTTCCTCCAAGCCGGCAGACCTCCTGTCA
AGCTTTTGTTGCTGGATTGCTGGCACGTGGAACTGATCATGATCAAGAACGACAGATGCATGCT
GCATTGCTGGTGGCACTATATTTGATACAGGGTTCGTCGGCCGGCTGATCAGGAAGGCCGTGGC
AGGCACCGCCGTCGTGGTTGCAAGCAACGGCCGGTGCGGCTGTTGTTCCTGGCCAGCATGCTGC
TGCTCCGACCTCCCAAGCTGATTGGAGTGTACCTGATCACCACTTATACCAAC

Transcript length: 336
Transcript exons: 4881888-4881968,4883011-4883265
TCCTTTTGTGCTCGAAGACGTGCAGCCCATTATCAGTTCCTCCAAGCCGGCAGACCTCCTGTCA
AGCTTTTGTTGCTGCTGCTGAAATTTGTCGTGGTGGAGAAGGATTGCTGGCACGTGGAACTGAT
CATGATCAAGAACGACAGATGCATGCTGCATTGCTGGTGGCACTATATTTGATACAGGGTTCGT
CGGCCGGCTGATCAGGAAGGCCGTGGCAGGCACCGCCGTCGTGGTTGCAAGCAACGGCCGGTGC
GGCTGTTGTTCCTGGCCAGCATGCTGCTGCTCCGACCTCCCAAGCTGATTGGAGTGTACCTGAT
CACCACTTATACCAAC

Transcript length: 339
Transcript exons: 4881888-4883265
TCCTTTTGTGCTCGAAGACGTGCAGCCCATTATCAGTTCCTCCAAGCCGGCAGACCTCCTGTCA
AGCTTTTGTTGCTGCTGCTGCTGAAATTTGTCGTGGTGGAGAAGGATTGCTGGCACGTGGAACT
GATCATGATCAAGAACGACAGATGCATGCTGCATTGCTGGTGGCACTATATTTGATACAGGGTT
CGTCGGCCGGCTGATCAGGAAGGCCGTGGCAGGCACCGCCGTCGTGGTTGCAAGCAACGGCCGG
TGCGGCTGTTGTTCCTGGCCAGCATGCTGCTGCTCCGACCTCCCAAGCTGATTGGAGTGTACCT
GATCACCACTTATACCAAC

Genomic sequence TCCTTTTGTGCTCGAAGACGTGCAGCCCATTATCAGTTCCTCCAAGCCGGCAGACCTCCTGTCA
AGCTTTTGTTGCTGCTGCTGCTGTGTTGCATGTTCGTTGTTAATTATGTTGGGATAGAACAGTA
GCTAAAGCATTCTTTAGTAAAGAGCAAAACGAAAAAAAAAAGTAAAGGAGCTACAATAATATAA
TTAAGTAAATCACCAAAGAGATGAAGAATGAGCTGAGACAATGCATTAGTATCTTGATATATAT
GAAATAAACAGTTCAATTGTATATAGATTTACCTAAAGTGATACATATATATAGGAACGGTGGA
AATACAAAGCAGATTCATTACCAGATTACACATATATATATGGGTAAACAAAGAATCCTTCCAG
AATTGTCTAGGCTCTATATTTATAGTCTAGAAAATGCATCTTCAGACAGCTTAATTTCATCCAT
ATGCAACTTCCTTGGTATATATATAAAAAAACATAGTTCATATCAAATAGTAATTACACGACTT
GAAAAACCCTACATATGTACAAATCAACATTAGAAGTGCCATAACTAGAATTTTTTTTAATATT
TTGTATATCACAATTATTTGTATAAATTATTGCCCAATATGTTTAGTATGACCAACTAAAAATG
ACTAATTTTGACACTTAAGATTATCACAAATCCTTGATTCTTTTTATTGAAATTGAAAGCTGAG
AATGGTTTTTAGTTTATTTTTAGAGAATTCAAAGGGATCCTATGATAGCAAGAAACTCTTAGCT
TGAAGGAGGAAAATGTGGACTTTAGACCAAGCCGTACTAATTAAGTTTGTCTAGATGGGAAGTA
TGAAATGTACTGCCTAGCGAGTCCATTGCTTGTTTTCAAGCTGAAATTGTTTTTTGTTGGAGAT
GGTTTGTTACTCCTTACTTAAATTTAACATTCTGAATATGTAAAGAATATTCTTCATAAATGCA
TGCATATATGTGTTCCTATAGTTTTTTTTTCAACAGCTACCGTGCCCAATCTATTACCCAGCTG
CTAGAAAAAGAGAAATTAGTATTAATTTTAGGGAATTATTTTAGATAATGGAAATGTTTTATTT
GAGGAGAAAATGTATAAGATGAGATGAAATCACACCTGAAATTTGTCGTGGTGGAGAAGGATTG
CTGGCACGTGGAACTGATCATGATCAAGAACGACAGATGCATGCTGCATTGCTGGTGGCACTAT
ATTTGATACAGGGTTCGTCGGCCGGCTGATCAGGAAGGCCGTGGCAGGCACCGCCGTCGTGGTT
GCAAGCAACGGCCGGTGCGGCTGTTGTTCCTGGCCAGCATGCTGCTGCTCCGACCTCCCAAGCT
GATTGGAGTGTACCTGATCACCACTTATACCAAC
Conservation Information
Conserved circRNAs osi_circ_001864* osi_circ_011306
PMCS 0.611462031
Functional Information
Coding potential Y
Potential coding position 4883207-4883106(+)
4883090-4881890(-)
Potential amino acid sequence MLLLRPPKLIGVYLITTYTNSFCARRRAAHYQFLQAGRPPVKLLLLLLKFVVVEKDCWHVELIM
IKNDRCMLHCWWHYI*(+)
MQHASVVLDHDQFHVPAILLHHDKFQQQQQKLDRRSAGLEELIMGCTSSSTKGVGISGDQVHSN
QLGRSEQQHAGQEQQPHRPLLATTTAVPATAFLISRPTNPVSNIVPPAMQHASVVLDHDQFHVP
AILLHHDKFQQQQQKLDRRSAGLEELIMGCTSSSTKGVGISGDQVHSNQLGRSEQQHAGQEQQP
HRPLLATTTAVPATAFLISRPTNPVSNIVPPAMQHASVVLDHDQFHVPAILLHHDKFQQQQQKL
DRRSAGLEELIMGCTSSSTKGVGISGDQVHSNQLGRSEQQHAGQEQQPHRPLLATTTAVPATAF
LISRPTNPVSNIVPPAMQHASVVLDHDQFHVPAILLHHDKFQQQQQKLDRRSAGLEELIMGCTS
SSTKG(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA