Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os01g0191300_circ_g.3 |
ID in PlantcircBase | osa_circ_000657 |
Alias | Os01circ04894/Os_ciR737, |
Organism | Oryza sativa |
Position | chr1: 4881888-4883265 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | ue-circRNA |
Identification method | CIRCexplorer, CIRI, KNIFE, PcircRNA_finder, SMALT, Segemehl, circRNA_finder, circseq_cup, find_circ, CIRI-long |
Parent gene | Os01g0191300 |
Parent gene annotation |
Similar to NAC-type transcription factor. (Os01t0191300-01);Simi lar to NAC-type transcription factor. (Os01t0191300-02);Similar to NAC-type transcription factor. (Os01t0191300-03) |
Parent gene strand | - |
Alternative splicing | Os01g0191300_circ_g.2 Os01g0191300_circ_g.4 Os01g0191300_circ_g.5 Os01g0191300_circ_g.6 |
Support reads | 10/46/9/14 |
Tissues | leaf and panicle/root/root/shoot, root, seed, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os01t0191300-02:2 Os01t0191300-01:2 Os01t0191300-03:1 |
Conservation Information | |
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Conserved circRNAs | osi_circ_001864* osi_circ_011306 |
PMCS | 0.611462031 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
4883207-4883106(+) 4883090-4881890(-) |
Potential amino acid sequence |
MLLLRPPKLIGVYLITTYTNSFCARRRAAHYQFLQAGRPPVKLLLLLLKFVVVEKDCWHVELIM IKNDRCMLHCWWHYI*(+) MQHASVVLDHDQFHVPAILLHHDKFQQQQQKLDRRSAGLEELIMGCTSSSTKGVGISGDQVHSN QLGRSEQQHAGQEQQPHRPLLATTTAVPATAFLISRPTNPVSNIVPPAMQHASVVLDHDQFHVP AILLHHDKFQQQQQKLDRRSAGLEELIMGCTSSSTKGVGISGDQVHSNQLGRSEQQHAGQEQQP HRPLLATTTAVPATAFLISRPTNPVSNIVPPAMQHASVVLDHDQFHVPAILLHHDKFQQQQQKL DRRSAGLEELIMGCTSSSTKGVGISGDQVHSNQLGRSEQQHAGQEQQPHRPLLATTTAVPATAF LISRPTNPVSNIVPPAMQHASVVLDHDQFHVPAILLHHDKFQQQQQKLDRRSAGLEELIMGCTS SSTKG(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Lu et al., 2015;Ye et al., 2015;Ye et al., 2016;Chu et al., 2017; this study |