Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Os01g0191300_circ_g.3 |
| ID in PlantcircBase | osa_circ_000657 |
| Alias | Os01circ04894/Os_ciR737, |
| Organism | Oryza sativa |
| Position | chr1: 4881888-4883265 JBrowse» |
| Reference genome | IRGSP-1.0.38 |
| Type | ue-circRNA |
| Identification method | CIRCexplorer, CIRI, KNIFE, PcircRNA_finder, SMALT, Segemehl, circRNA_finder, circseq_cup, find_circ, CIRI-long |
| Parent gene | Os01g0191300 |
| Parent gene annotation |
Similar to NAC-type transcription factor. (Os01t0191300-01);Simi lar to NAC-type transcription factor. (Os01t0191300-02);Similar to NAC-type transcription factor. (Os01t0191300-03) |
| Parent gene strand | - |
| Alternative splicing | Os01g0191300_circ_g.2 Os01g0191300_circ_g.4 Os01g0191300_circ_g.5 Os01g0191300_circ_g.6 |
| Support reads | 10/46/9/14 |
| Tissues | leaf and panicle/root/root/shoot, root, seed, root |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Os01t0191300-02:2 Os01t0191300-01:2 Os01t0191300-03:1 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | osi_circ_001864* osi_circ_011306 |
| PMCS | 0.611462031 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
4883207-4883106(+) 4883090-4881890(-) |
| Potential amino acid sequence |
MLLLRPPKLIGVYLITTYTNSFCARRRAAHYQFLQAGRPPVKLLLLLLKFVVVEKDCWHVELIM IKNDRCMLHCWWHYI*(+) MQHASVVLDHDQFHVPAILLHHDKFQQQQQKLDRRSAGLEELIMGCTSSSTKGVGISGDQVHSN QLGRSEQQHAGQEQQPHRPLLATTTAVPATAFLISRPTNPVSNIVPPAMQHASVVLDHDQFHVP AILLHHDKFQQQQQKLDRRSAGLEELIMGCTSSSTKGVGISGDQVHSNQLGRSEQQHAGQEQQP HRPLLATTTAVPATAFLISRPTNPVSNIVPPAMQHASVVLDHDQFHVPAILLHHDKFQQQQQKL DRRSAGLEELIMGCTSSSTKGVGISGDQVHSNQLGRSEQQHAGQEQQPHRPLLATTTAVPATAF LISRPTNPVSNIVPPAMQHASVVLDHDQFHVPAILLHHDKFQQQQQKLDRRSAGLEELIMGCTS SSTKG(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Lu et al., 2015;Ye et al., 2015;Ye et al., 2016;Chu et al., 2017; this study |