Plant Circular RNA Database

Detail information of Os01g0191300_circ_g.4

			
						 General Information
					
						CircRNA Name
						Os01g0191300_circ_g.4
					
						ID in PlantcircBase
						osa_circ_000658
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr1: 4881888-4884615  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os01g0191300						
					
						Parent gene annotation
						
							Similar to NAC-type transcription factor. (Os01t0191300-01);Simi
lar to NAC-type transcription factor. (Os01t0191300-02);Similar 
to NAC-type transcription factor. (Os01t0191300-03)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os01g0191300_circ_g.2 Os01g0191300_circ_g.3 Os01g0191300_circ_g.5 Os01g0191300_circ_g.6 						
					
						Support reads
						2
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os01t0191300-02:3
Os01t0191300-01:3
Os01t0191300-03:2

General Information
CircRNA Name	Os01g0191300_circ_g.4
ID in PlantcircBase	osa_circ_000658
Alias	NA
Organism	Oryza sativa
Position	chr1: 4881888-4884615 JBrowse»
Reference genome	IRGSP-1.0.38
Type	u-circRNA
Identification method	CIRCexplorer
Parent gene	Os01g0191300
Parent gene annotation	Similar to NAC-type transcription factor. (Os01t0191300-01);Simi lar to NAC-type transcription factor. (Os01t0191300-02);Similar to NAC-type transcription factor. (Os01t0191300-03)
Parent gene strand	-
Alternative splicing	Os01g0191300_circ_g.2 Os01g0191300_circ_g.3 Os01g0191300_circ_g.5 Os01g0191300_circ_g.6
Support reads	2
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os01t0191300-02:3 Os01t0191300-01:3 Os01t0191300-03:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TCGCACTCCGTCTGGATCTTCCGCCGCTTCCTCGTCCCCGTCGTGTACGCCTTCGACGGCCGGT
GGAAGAAGTGCTTGCTCAGGCCGTCCCTTGTCACACtccttttgtgctcgaagacgtgcagccc
attatcagttcctccaagccggcagacctcctgtcaagcttttgttgctgctgctgctgtgttg
catgttcg

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							TCCTTTTGTGCTCGAAGACGTGCAGCCCATTATCAGTTCCTCCAAGCCGGCAGACCTCCTGTCA
AGCTTTTGTTGCTGCTGCTGCTGTGTTGCATGTTCGTTGTTAATTATGTTGGGATAGAACAGTA
GCTAAAGCATTCTTTAGTAAAGAGCAAAACGAAAAAAAAAAGTAAAGGAGCTACAATAATATAA
TTAAGTAAATCACCAAAGAGATGAAGAATGAGCTGAGACAATGCATTAGTATCTTGATATATAT
GAAATAAACAGTTCAATTGTATATAGATTTACCTAAAGTGATACATATATATAGGAACGGTGGA
AATACAAAGCAGATTCATTACCAGATTACACATATATATATGGGTAAACAAAGAATCCTTCCAG
AATTGTCTAGGCTCTATATTTATAGTCTAGAAAATGCATCTTCAGACAGCTTAATTTCATCCAT
ATGCAACTTCCTTGGTATATATATAAAAAAACATAGTTCATATCAAATAGTAATTACACGACTT
GAAAAACCCTACATATGTACAAATCAACATTAGAAGTGCCATAACTAGAATTTTTTTTAATATT
TTGTATATCACAATTATTTGTATAAATTATTGCCCAATATGTTTAGTATGACCAACTAAAAATG
ACTAATTTTGACACTTAAGATTATCACAAATCCTTGATTCTTTTTATTGAAATTGAAAGCTGAG
AATGGTTTTTAGTTTATTTTTAGAGAATTCAAAGGGATCCTATGATAGCAAGAAACTCTTAGCT
TGAAGGAGGAAAATGTGGACTTTAGACCAAGCCGTACTAATTAAGTTTGTCTAGATGGGAAGTA
TGAAATGTACTGCCTAGCGAGTCCATTGCTTGTTTTCAAGCTGAAATTGTTTTTTGTTGGAGAT
GGTTTGTTACTCCTTACTTAAATTTAACATTCTGAATATGTAAAGAATATTCTTCATAAATGCA
TGCATATATGTGTTCCTATAGTTTTTTTTTCAACAGCTACCGTGCCCAATCTATTACCCAGCTG
CTAGAAAAAGAGAAATTAGTATTAATTTTAGGGAATTATTTTAGATAATGGAAATGTTTTATTT
GAGGAGAAAATGTATAAGATGAGATGAAATCACACCTGAAATTTGTCGTGGTGGAGAAGGATTG
CTGGCACGTGGAACTGATCATGATCAAGAACGACAGATGCATGCTGCATTGCTGGTGGCACTAT
ATTTGATACAGGGTTCGTCGGCCGGCTGATCAGGAAGGCCGTGGCAGGCACCGCCGTCGTGGTT
GCAAGCAACGGCCGGTGCGGCTGTTGTTCCTGGCCAGCATGCTGCTGCTCCGACCTCCCAAGCT
GATTGGAGTGTACCTGATCACCACTTATACCAACCTGTTTGATGCAAACAAATGGAAAAATTCC
ATGTCATGCATGCATAATGTTTTTTATAAAACTAACATACATGCATAATGTTCCCATTATATTT
GTCTTTTATCACTCCCTTTCAGTTAGTATGTATGTTACAGTAGTATGTATATTATTTGAACTTT
CTTGAAATATACATTTTTTGGTTGGAATAATTGAAAGAATGAGACCGGGCCAATTATATATATT
ACTAGTTTTTGCTTTCACGGTGGGTGGATCGTGGATGGTTTTAGGGTTGCTTGCAATCTGAGTA
AAATGATGTGAGGCTCGAACTAAAAGGGTCCATGCTGCTGTGTGATGTGTAGCTCATCTTTTGC
TTTAAATTGGCGCATCCTACACATTTGGTCAGCTACCCCGCCCCAAACCGCTCATCCATACGCA
ACAAATTGAAGGAAGCTCATCTAATCAAACAGAAAGTATATGTATCCCAATCTGCACCTAGAAA
AACAGAAAGTCAGTATATATCCATGCGAGCGAGTGTATATATATCCATGCATGCGTGCATGGGA
ATATGGACCATGGTTAATTTGCATGATCTGCATGACGTGCACTGATTAAGATGCATGCAGAAAA
CGGCACAGAACCTAACCAGCAGTTTACTTGGAGAGAAACTGATTAGGATGCGTAACCTAACCAG
CATTACTCCGAAAACTGATCAAAGATTCATACAGTATGTATACAGAAAAGTGGCAGTATGCATG
TAACAAGTGGTAATTAAATTAATTACCTCCTCGAAACTCTTCCTGAAAGGCGCGAAGCTGAAAT
GGTCGGCGGCATGCTTCAAATGCTGCATCTCGACGGCGGCGGCGACGGCGTACCCGGCCGTCGA
GTAGGACGTCGCCGACACCTCGTGGTCCCTCGTCGACGAGCAGCTGCCGCTGCCGCTGTCCCTC
CTGCGCTGCTGATCCTGCTGCACCGCCGCCGTCGTCACGGCGGATGCGGTGGCGGCGGCGCCGC
CGCCGCGGTCGGAGGACCAGCTGCACTGCCGAGGCTGCGTCTGGTAGAAGATCTTGCAGACGAC
GAGCTCCCCTTCCTTCTCCTCCTCGAGGTCGCCGAGGTGGTACTGGTGCATCACCCAGTTGGTC
TTCTCCGGCTTGCGGTGCTTGCCGAAGTTGGTGTAGAGGACCAGTATCTTCTTGCACCCCTTCT
GCCGGCCGCTCACCATCACCGGCCGGGTCTTGCCGGTCTTGTGCCACCTCGTCTCCCCCTTCTG
CACGTCGCACTCCGTCTGGATCTTCCGCCGCTTCCTCGTCCCCGTCGTGTACGCCTTCGACGGC
CGGTGGAAGAAGTGCTTGCTCAGGCCGTCCCTTGTCACAC
						
					

			
		

Sequences
Splice junction sequence	TCGCACTCCGTCTGGATCTTCCGCCGCTTCCTCGTCCCCGTCGTGTACGCCTTCGACGGCCGGT GGAAGAAGTGCTTGCTCAGGCCGTCCCTTGTCACACtccttttgtgctcgaagacgtgcagccc attatcagttcctccaagccggcagacctcctgtcaagcttttgttgctgctgctgctgtgttg catgttcg
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	TCCTTTTGTGCTCGAAGACGTGCAGCCCATTATCAGTTCCTCCAAGCCGGCAGACCTCCTGTCA AGCTTTTGTTGCTGCTGCTGCTGTGTTGCATGTTCGTTGTTAATTATGTTGGGATAGAACAGTA GCTAAAGCATTCTTTAGTAAAGAGCAAAACGAAAAAAAAAAGTAAAGGAGCTACAATAATATAA TTAAGTAAATCACCAAAGAGATGAAGAATGAGCTGAGACAATGCATTAGTATCTTGATATATAT GAAATAAACAGTTCAATTGTATATAGATTTACCTAAAGTGATACATATATATAGGAACGGTGGA AATACAAAGCAGATTCATTACCAGATTACACATATATATATGGGTAAACAAAGAATCCTTCCAG AATTGTCTAGGCTCTATATTTATAGTCTAGAAAATGCATCTTCAGACAGCTTAATTTCATCCAT ATGCAACTTCCTTGGTATATATATAAAAAAACATAGTTCATATCAAATAGTAATTACACGACTT GAAAAACCCTACATATGTACAAATCAACATTAGAAGTGCCATAACTAGAATTTTTTTTAATATT TTGTATATCACAATTATTTGTATAAATTATTGCCCAATATGTTTAGTATGACCAACTAAAAATG ACTAATTTTGACACTTAAGATTATCACAAATCCTTGATTCTTTTTATTGAAATTGAAAGCTGAG AATGGTTTTTAGTTTATTTTTAGAGAATTCAAAGGGATCCTATGATAGCAAGAAACTCTTAGCT TGAAGGAGGAAAATGTGGACTTTAGACCAAGCCGTACTAATTAAGTTTGTCTAGATGGGAAGTA TGAAATGTACTGCCTAGCGAGTCCATTGCTTGTTTTCAAGCTGAAATTGTTTTTTGTTGGAGAT GGTTTGTTACTCCTTACTTAAATTTAACATTCTGAATATGTAAAGAATATTCTTCATAAATGCA TGCATATATGTGTTCCTATAGTTTTTTTTTCAACAGCTACCGTGCCCAATCTATTACCCAGCTG CTAGAAAAAGAGAAATTAGTATTAATTTTAGGGAATTATTTTAGATAATGGAAATGTTTTATTT GAGGAGAAAATGTATAAGATGAGATGAAATCACACCTGAAATTTGTCGTGGTGGAGAAGGATTG CTGGCACGTGGAACTGATCATGATCAAGAACGACAGATGCATGCTGCATTGCTGGTGGCACTAT ATTTGATACAGGGTTCGTCGGCCGGCTGATCAGGAAGGCCGTGGCAGGCACCGCCGTCGTGGTT GCAAGCAACGGCCGGTGCGGCTGTTGTTCCTGGCCAGCATGCTGCTGCTCCGACCTCCCAAGCT GATTGGAGTGTACCTGATCACCACTTATACCAACCTGTTTGATGCAAACAAATGGAAAAATTCC ATGTCATGCATGCATAATGTTTTTTATAAAACTAACATACATGCATAATGTTCCCATTATATTT GTCTTTTATCACTCCCTTTCAGTTAGTATGTATGTTACAGTAGTATGTATATTATTTGAACTTT CTTGAAATATACATTTTTTGGTTGGAATAATTGAAAGAATGAGACCGGGCCAATTATATATATT ACTAGTTTTTGCTTTCACGGTGGGTGGATCGTGGATGGTTTTAGGGTTGCTTGCAATCTGAGTA AAATGATGTGAGGCTCGAACTAAAAGGGTCCATGCTGCTGTGTGATGTGTAGCTCATCTTTTGC TTTAAATTGGCGCATCCTACACATTTGGTCAGCTACCCCGCCCCAAACCGCTCATCCATACGCA ACAAATTGAAGGAAGCTCATCTAATCAAACAGAAAGTATATGTATCCCAATCTGCACCTAGAAA AACAGAAAGTCAGTATATATCCATGCGAGCGAGTGTATATATATCCATGCATGCGTGCATGGGA ATATGGACCATGGTTAATTTGCATGATCTGCATGACGTGCACTGATTAAGATGCATGCAGAAAA CGGCACAGAACCTAACCAGCAGTTTACTTGGAGAGAAACTGATTAGGATGCGTAACCTAACCAG CATTACTCCGAAAACTGATCAAAGATTCATACAGTATGTATACAGAAAAGTGGCAGTATGCATG TAACAAGTGGTAATTAAATTAATTACCTCCTCGAAACTCTTCCTGAAAGGCGCGAAGCTGAAAT GGTCGGCGGCATGCTTCAAATGCTGCATCTCGACGGCGGCGGCGACGGCGTACCCGGCCGTCGA GTAGGACGTCGCCGACACCTCGTGGTCCCTCGTCGACGAGCAGCTGCCGCTGCCGCTGTCCCTC CTGCGCTGCTGATCCTGCTGCACCGCCGCCGTCGTCACGGCGGATGCGGTGGCGGCGGCGCCGC CGCCGCGGTCGGAGGACCAGCTGCACTGCCGAGGCTGCGTCTGGTAGAAGATCTTGCAGACGAC GAGCTCCCCTTCCTTCTCCTCCTCGAGGTCGCCGAGGTGGTACTGGTGCATCACCCAGTTGGTC TTCTCCGGCTTGCGGTGCTTGCCGAAGTTGGTGTAGAGGACCAGTATCTTCTTGCACCCCTTCT GCCGGCCGCTCACCATCACCGGCCGGGTCTTGCCGGTCTTGTGCCACCTCGTCTCCCCCTTCTG CACGTCGCACTCCGTCTGGATCTTCCGCCGCTTCCTCGTCCCCGTCGTGTACGCCTTCGACGGC CGGTGGAAGAAGTGCTTGCTCAGGCCGTCCCTTGTCACAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.397870003

Conservation Information
Conserved circRNAs	NA
PMCS	0.397870003

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							4883207-4883011(+)
4884236-4883106(+)
4884465-4884612(-)
						
						Potential amino acid sequence
						
							MLLLRPPKLIGVYLITTYTNLLETLPERREAEMVGGMLQMLHLDGGGDGVPGRRVGRRRHLVVP
RRRAAAAAAVPPALLILLHRRRRHGGCGGGGAAAAVGGPAALPRLRLVEDLADDELPFLLLLEV
AEVVLVHHPVGLLRLAVLAEVGVEDQYLLAPLLPAAHHHRPGLAGLVPPRLPLLHVALRLDLPP
LPRPRRVRLRRPVEEVLAQAVPCHTPFVLEDVQPIISSSKPADLLSSFCCCC*(+)
MRWRRRRRRGRRTSCTAEAASGRRSCRRRAPLPSPPRGRRGGTGASPSWSSPACGACRSWCRGP
VSSCTPSAGRSPSPAGSCRSCATSSPPSARRTPSGSSAASSSPSCTPSTAGGRSACSGRPLSHS
FCARRRAAHYQFLQAGRPPVKLLLLLLKFVVVEKDCWHVELIMIKNDRCMLHCWWHYI*(+)
MVSGRQKGCKKILVLYTNFGKHRKPEKTNWVMHQYHLGDLEEEKEGELVVCKIFYQTQPRQCSW
SSDRGGGAAATASAVTTAAVQQDQQRRRDSGSGSCSSTRDHEVSATSYSTAGYAVAAAVEMQHL
KHAADHFSFAPFRKSFEEVGISGDQVHSNQLGRSEQQHAGQEQQPHRPLLATTTAVPATAFLIS
RPTNPVSNIVPPAMQHASVVLDHDQFHVPAILLHHDKFQQQQQKLDRRSAGLEELIMGCTSSST
KGV*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	4883207-4883011(+) 4884236-4883106(+) 4884465-4884612(-)
Potential amino acid sequence	MLLLRPPKLIGVYLITTYTNLLETLPERREAEMVGGMLQMLHLDGGGDGVPGRRVGRRRHLVVP RRRAAAAAAVPPALLILLHRRRRHGGCGGGGAAAAVGGPAALPRLRLVEDLADDELPFLLLLEV AEVVLVHHPVGLLRLAVLAEVGVEDQYLLAPLLPAAHHHRPGLAGLVPPRLPLLHVALRLDLPP LPRPRRVRLRRPVEEVLAQAVPCHTPFVLEDVQPIISSSKPADLLSSFCCCC(+) MRWRRRRRRGRRTSCTAEAASGRRSCRRRAPLPSPPRGRRGGTGASPSWSSPACGACRSWCRGP VSSCTPSAGRSPSPAGSCRSCATSSPPSARRTPSGSSAASSSPSCTPSTAGGRSACSGRPLSHS FCARRRAAHYQFLQAGRPPVKLLLLLLKFVVVEKDCWHVELIMIKNDRCMLHCWWHYI(+) MVSGRQKGCKKILVLYTNFGKHRKPEKTNWVMHQYHLGDLEEEKEGELVVCKIFYQTQPRQCSW SSDRGGGAAATASAVTTAAVQQDQQRRRDSGSGSCSSTRDHEVSATSYSTAGYAVAAAVEMQHL KHAADHFSFAPFRKSFEEVGISGDQVHSNQLGRSEQQHAGQEQQPHRPLLATTTAVPATAFLIS RPTNPVSNIVPPAMQHASVVLDHDQFHVPAILLHHDKFQQQQQKLDRRSAGLEELIMGCTSSST KGV*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os01g0191300_circ_g.4

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