Plant Circular RNA Database

Detail information of Os04g0610900_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os04g0610900_circ_g.2
					
						ID in PlantcircBase
						osa_circ_025188
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr4: 30975476-30978728  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os04g0610900						
					
						Parent gene annotation
						
							Similar to EDR1. (Os04t0610900-01)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os04g0611000_circ_g.1 Os04g0611000_circ_g.2 Os04g0611000_circ_g.3 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os04t0610900-01:9

General Information
CircRNA Name	Os04g0610900_circ_g.2
ID in PlantcircBase	osa_circ_025188
Alias	NA
Organism	Oryza sativa
Position	chr4: 30975476-30978728 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os04g0610900
Parent gene annotation	Similar to EDR1. (Os04t0610900-01)
Parent gene strand	+
Alternative splicing	Os04g0611000_circ_g.1 Os04g0611000_circ_g.2 Os04g0611000_circ_g.3
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os04t0610900-01:9

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GGCGAAAGGCATCAACTATCTCCATTGCCTGAATCCTCCAATTGTACATTGGGATTTGAAAACG
CCAAACATGCTGGTGGACAAGAACTGGTCCGTGAAGgtgaacgggtgcttgtcgtggggggaca
agatcgcgcacgggttctacaacatcctgggggtggacccgcacgtgtgggcgatgtgcaacgc
tgcggcgg

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GTGAACGGGTGCTTGTCGTGGGGGGACAAGATCGCGCACGGGTTCTACAACATCCTGGGGGTGG
ACCCGCACGTGTGGGCGATGTGCAACGCTGCGGCGGAGGACGGCCGGCGGCTGCCGACGCTGGT
GGCGCTCCGGGCGGTGGACAGCGGCGAGTCGTCGGTGCTGGAGGTGGTGCTCGTCGACAAGTGC
GGCGACCCAGCGCTCGCCGACCTCGAGCGCCGGGCCCTCGACCTCTACCGCGCCGCCGGCGTCT
CCCTCGACCTCGTCCGCCACCTCGCCGTCCTCGTCTCCGACCACATGGGGTAATCACACACTAA
CCAATGCAATGTACCCCTTACTGTTGTCTTGGTTTATTTTCTCCGTCCTAAAAGAAACCTGGAT
TATTTTCTCCGTCCTAAAAGAAACCCACCGACCTATAAGCGAGTTTGTTTTGGGATGGAGGGAG
CATTTTACAAGAAATGTTGACCGGATTATCGACGAGAGTTCGTTAGTTTGCGTTTTAGCTTATC
AGCCGTAGCTAAAATTTAATTTTAGAGTTGATTTTGATTTTTTTTGTTGTGTTATTTTTCATTA
TTGGTTTTTAAATTAAAAACATACTGTATATAAAAATTTTCCTCACAAATTATCTTTTAAGTTG
TGTTGTTCACCTGTACAACAAACGATGAGTCTGTTCGTTGATAAAAATTAGCGGCGTACTAGCC
GCCGTGCTGTGGATGCAACTGCGAATGTGATTCACAGGACTGGGCAAGTCAACAAGCTCGATCG
TCCCCGTGAACATGAGCACCGACGAACACGTGAACACAGCTTCATTTTTCAGAAAAATAAGTGA
GCTAGATAATCTAGGTACTGTACGGCTGTATAAACGGAGTAGTACGCCCAGGCTTAATTCGCTG
CACGTACCTCTGTACTTGTCTGTACCTGTGCAAGTTGCATCTACTATCTGTTTCTTTGCTTAAT
TGGTCTTTGAAATGTACAGTGTCACCATGCATCTGTACTCTATGGACCACAAGAACTATTAAGG
ACTATACTTAACAGTCAAGTCTAGTTGCTCTTAGATTTTGTAGACATATGCTTTCTCCGTTTCA
TATTGTAGCAAGTAGTTTTAGGTTTGTTCCAAGTCAAACCTTGTCTTGAGTTTTACTGAGTTTA
TTGAAAAAATACTCCAACAACTGAAACATCAAATTAGTTTTATTAAACCCACCGTGAAATGTCT
TGGTAGTGTATTTATTTGTTACCGGGTGTATTTTTCTATAAACTCAGTCAAAATTAGAGAAGTT
TAACTTAAGATAAAACTAAAATGTCTTACAATATGAAAGAGAAAAACTAAGTTGTGCTTTGCTC
GTCAGAACTTGCAGACATGTAGACTCAGATTTCAGTTGCAGGTTCACTTTCAGGCATAGTTGCA
CCGAACATTCAGCATTGGTCTCTGACGACTTTCAATGGAGTTTGTGTTTGTGCAGGGGCGCGTT
GCGGTCGGAGGACGGGGACCTGTTCATGCGGTGGAAGGCGGTGAGCAAGCAGCTGAGGAAGCGG
CACAGGTGCGTCGTCGTCCCCATCGGCAGCCTCTCCATCGGCTTCTGCCGCCACCGCGCCATCC
TCTTCAAGAGCCTCGCCGACTTCATCGGCCTTCCCTGCCGGATCGCGCAGGGCTGCAAGTACTG
CTCCGCGCCGCACCGCTCGTCCTGCCTCGTCAAGATCGACAACGAGAGAAGGTTTGTAAGGTCA
GTCTGTCGATCTCCCTCTGAAATGTAGCAGATGTGCTGTTGCATATGACTTGACTGAACTTTGC
TGGTTGGTTGGTTCAGGGAGTACGTCGTCGACCTCGTCGTTGAGCCGGGAAGACTCAGCAGTCC
AGACTCGTCTATCAATGGCCAGTTGCTCTCCTCCGTGCCTTCACCTTTCAAGACCTCATGTACA
ATGAGTTCTGCAAACTATGCAACACCGGCTGCTTCGTGGAATCGCGCGATATCTGGAGATCGTC
GCAACTCGATACTGTCAAATCCTCAGTATTCAGGTACAGATATACCATTCTTTCTCCACAGCAA
ATATGTTATTGGAGTATTCTGATTAGCCATTTACAATCTTTCTTGTGCTGCGTACAGTTGCTAA
GTACTGTGTTGCCGAGGAGAAGAGCTCTGTTCAGGTAGCCACCAAAGAAGCCATGCTGCCAAAA
TGCGGTCAGATCACGCAGAACGGCAACTGCAACAAGAACAGTATGGCAGTGTTCGAAGTGTCGA
AGCAGATGAAGGCGATGGAGATCAGTTCTGAGAGTGGCGATAAGGACAACATCTCCAGTGCTAC
GCCTCTGAAACGGCTGAGCATCGAGCCGTCTTTCTGCGCCGATTGGCTCGAGATTTCATGGGAC
GAGATCGAGCTAAAGGAACGCGTAGGCGCCGGTACTTCTTTACCTTCATGTTTGTTACTGATTT
ACCTGTATGATGTGAAATCTGATCGCTGCTGAAATGCAATGCAGGTTCGTTTGGAACTGTGTAT
CGTGCTGACTGGCACGGCTCTGTAAGTATATTGAACTTTTGGCTCATTGTGTAAGCTTGATTCC
CTTTGGAGATCATAAACTTGAGGTTGTAGATTTGAAATGTAGGATGTTGCAGTGAAGGTGCTTA
CTGACCAGGATGTCGGCGAAGCTCAACTGAAAGAATTCCTTAGAGAGGTCTCTGCCCCATTATG
CTTTGATTCTTTATAACTTGAACTAACTGTTCCTTTGGATCACAAACCAGTTCCATCTTTCTAA
CTTGGAAATTGTTTTTAACCACTACAGATTGCAATCATGAAGCGTGTTCGCCATCCGAATGTGG
TGTTATTCATGGGTGCAGTGACAAAATGCCCACATTTGTCGATAGTAACAGAGTATCTGCCCAG
GTGAACCTCTCCCTCAGTTTCAGTTGACAAAACCTATCAATGATAGTTTGTCCTTCACCAAATA
ATCTTTCTGATGATGCAAATAGAGGGAGCCTCTTCCGTCTCATCAACAAGGCATCTGCTGGAGA
AATGCTCGATTTAAGGCGTCGTTTGCGCATGGCGTTAGATGTTGTATGTATCACAGCTTTTTTC
TTCTCTTCTGCATACTGTATGCATCTGAACCGTTACTGGTTTCTCTGAACAATGTATCACCCAT
GCTTTGTTTGTAATGCAGGCGAAAGGCATCAACTATCTCCATTGCCTGAATCCTCCAATTGTAC
ATTGGGATTTGAAAACGCCAAACATGCTGGTGGACAAGAACTGGTCCGTGAAG
						
					

			
		

Sequences
Splice junction sequence	GGCGAAAGGCATCAACTATCTCCATTGCCTGAATCCTCCAATTGTACATTGGGATTTGAAAACG CCAAACATGCTGGTGGACAAGAACTGGTCCGTGAAGgtgaacgggtgcttgtcgtggggggaca agatcgcgcacgggttctacaacatcctgggggtggacccgcacgtgtgggcgatgtgcaacgc tgcggcgg
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GTGAACGGGTGCTTGTCGTGGGGGGACAAGATCGCGCACGGGTTCTACAACATCCTGGGGGTGG ACCCGCACGTGTGGGCGATGTGCAACGCTGCGGCGGAGGACGGCCGGCGGCTGCCGACGCTGGT GGCGCTCCGGGCGGTGGACAGCGGCGAGTCGTCGGTGCTGGAGGTGGTGCTCGTCGACAAGTGC GGCGACCCAGCGCTCGCCGACCTCGAGCGCCGGGCCCTCGACCTCTACCGCGCCGCCGGCGTCT CCCTCGACCTCGTCCGCCACCTCGCCGTCCTCGTCTCCGACCACATGGGGTAATCACACACTAA CCAATGCAATGTACCCCTTACTGTTGTCTTGGTTTATTTTCTCCGTCCTAAAAGAAACCTGGAT TATTTTCTCCGTCCTAAAAGAAACCCACCGACCTATAAGCGAGTTTGTTTTGGGATGGAGGGAG CATTTTACAAGAAATGTTGACCGGATTATCGACGAGAGTTCGTTAGTTTGCGTTTTAGCTTATC AGCCGTAGCTAAAATTTAATTTTAGAGTTGATTTTGATTTTTTTTGTTGTGTTATTTTTCATTA TTGGTTTTTAAATTAAAAACATACTGTATATAAAAATTTTCCTCACAAATTATCTTTTAAGTTG TGTTGTTCACCTGTACAACAAACGATGAGTCTGTTCGTTGATAAAAATTAGCGGCGTACTAGCC GCCGTGCTGTGGATGCAACTGCGAATGTGATTCACAGGACTGGGCAAGTCAACAAGCTCGATCG TCCCCGTGAACATGAGCACCGACGAACACGTGAACACAGCTTCATTTTTCAGAAAAATAAGTGA GCTAGATAATCTAGGTACTGTACGGCTGTATAAACGGAGTAGTACGCCCAGGCTTAATTCGCTG CACGTACCTCTGTACTTGTCTGTACCTGTGCAAGTTGCATCTACTATCTGTTTCTTTGCTTAAT TGGTCTTTGAAATGTACAGTGTCACCATGCATCTGTACTCTATGGACCACAAGAACTATTAAGG ACTATACTTAACAGTCAAGTCTAGTTGCTCTTAGATTTTGTAGACATATGCTTTCTCCGTTTCA TATTGTAGCAAGTAGTTTTAGGTTTGTTCCAAGTCAAACCTTGTCTTGAGTTTTACTGAGTTTA TTGAAAAAATACTCCAACAACTGAAACATCAAATTAGTTTTATTAAACCCACCGTGAAATGTCT TGGTAGTGTATTTATTTGTTACCGGGTGTATTTTTCTATAAACTCAGTCAAAATTAGAGAAGTT TAACTTAAGATAAAACTAAAATGTCTTACAATATGAAAGAGAAAAACTAAGTTGTGCTTTGCTC GTCAGAACTTGCAGACATGTAGACTCAGATTTCAGTTGCAGGTTCACTTTCAGGCATAGTTGCA CCGAACATTCAGCATTGGTCTCTGACGACTTTCAATGGAGTTTGTGTTTGTGCAGGGGCGCGTT GCGGTCGGAGGACGGGGACCTGTTCATGCGGTGGAAGGCGGTGAGCAAGCAGCTGAGGAAGCGG CACAGGTGCGTCGTCGTCCCCATCGGCAGCCTCTCCATCGGCTTCTGCCGCCACCGCGCCATCC TCTTCAAGAGCCTCGCCGACTTCATCGGCCTTCCCTGCCGGATCGCGCAGGGCTGCAAGTACTG CTCCGCGCCGCACCGCTCGTCCTGCCTCGTCAAGATCGACAACGAGAGAAGGTTTGTAAGGTCA GTCTGTCGATCTCCCTCTGAAATGTAGCAGATGTGCTGTTGCATATGACTTGACTGAACTTTGC TGGTTGGTTGGTTCAGGGAGTACGTCGTCGACCTCGTCGTTGAGCCGGGAAGACTCAGCAGTCC AGACTCGTCTATCAATGGCCAGTTGCTCTCCTCCGTGCCTTCACCTTTCAAGACCTCATGTACA ATGAGTTCTGCAAACTATGCAACACCGGCTGCTTCGTGGAATCGCGCGATATCTGGAGATCGTC GCAACTCGATACTGTCAAATCCTCAGTATTCAGGTACAGATATACCATTCTTTCTCCACAGCAA ATATGTTATTGGAGTATTCTGATTAGCCATTTACAATCTTTCTTGTGCTGCGTACAGTTGCTAA GTACTGTGTTGCCGAGGAGAAGAGCTCTGTTCAGGTAGCCACCAAAGAAGCCATGCTGCCAAAA TGCGGTCAGATCACGCAGAACGGCAACTGCAACAAGAACAGTATGGCAGTGTTCGAAGTGTCGA AGCAGATGAAGGCGATGGAGATCAGTTCTGAGAGTGGCGATAAGGACAACATCTCCAGTGCTAC GCCTCTGAAACGGCTGAGCATCGAGCCGTCTTTCTGCGCCGATTGGCTCGAGATTTCATGGGAC GAGATCGAGCTAAAGGAACGCGTAGGCGCCGGTACTTCTTTACCTTCATGTTTGTTACTGATTT ACCTGTATGATGTGAAATCTGATCGCTGCTGAAATGCAATGCAGGTTCGTTTGGAACTGTGTAT CGTGCTGACTGGCACGGCTCTGTAAGTATATTGAACTTTTGGCTCATTGTGTAAGCTTGATTCC CTTTGGAGATCATAAACTTGAGGTTGTAGATTTGAAATGTAGGATGTTGCAGTGAAGGTGCTTA CTGACCAGGATGTCGGCGAAGCTCAACTGAAAGAATTCCTTAGAGAGGTCTCTGCCCCATTATG CTTTGATTCTTTATAACTTGAACTAACTGTTCCTTTGGATCACAAACCAGTTCCATCTTTCTAA CTTGGAAATTGTTTTTAACCACTACAGATTGCAATCATGAAGCGTGTTCGCCATCCGAATGTGG TGTTATTCATGGGTGCAGTGACAAAATGCCCACATTTGTCGATAGTAACAGAGTATCTGCCCAG GTGAACCTCTCCCTCAGTTTCAGTTGACAAAACCTATCAATGATAGTTTGTCCTTCACCAAATA ATCTTTCTGATGATGCAAATAGAGGGAGCCTCTTCCGTCTCATCAACAAGGCATCTGCTGGAGA AATGCTCGATTTAAGGCGTCGTTTGCGCATGGCGTTAGATGTTGTATGTATCACAGCTTTTTTC TTCTCTTCTGCATACTGTATGCATCTGAACCGTTACTGGTTTCTCTGAACAATGTATCACCCAT GCTTTGTTTGTAATGCAGGCGAAAGGCATCAACTATCTCCATTGCCTGAATCCTCCAATTGTAC ATTGGGATTTGAAAACGCCAAACATGCTGGTGGACAAGAACTGGTCCGTGAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.108785969

Conservation Information
Conserved circRNAs	NA
PMCS	0.108785969

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							30975558-30978725(+)
30978318-30977307(+)
						
					

						Potential amino acid sequence
						
							MCNAAAEDGRRLPTLVALRAVDSGESSVLEVVLVDKCGDPALADLERRALDLYRAAGVSLDLVR
HLAVLVSDHMGGALRSEDGDLFMRWKAVSKQLRKRHRCVVVPIGSLSIGFCRHRAILFKSLADF
IGLPCRIAQGCKYCSAPHRSSCLVKIDNERRFVREYVVDLVVEPGRLSSPDSSINGQLLSSVPS
PFKTSCTMSSANYATPAASWNRAISGDRRNSILSNPQYSVAKYCVAEEKSSVQVATKEAMLPKC
GQITQNGNCNKNSMAVFEVSKQMKAMEISSESGDKDNISSATPLKRLSIEPSFCADWLEISWDE
IELKERVGAGSFGTVYRADWHGSDVAVKVLTDQDVGEAQLKEFLREIAIMKRVRHPNVVLFMGA
VTKCPHLSIVTEYLPRGSLFRLINKASAGEMLDLRRRLRMALDVAKGINYLHCLNPPIVHWDLK
TPNMLVDKNWSVKVNGCLSWGDKIAHGFYNILGVDPHVWAMCNAAAEDGRRLPTLVALRAVDSG
ESSVLEVVLVDKCGDPALADLERRALDLYRAAGVSLDLVRHLAVLVSDHMGGALRSEDGDLFMR
WKAVSKQLRKRHRCVVVPIGSLSIGFCRHRAILFKSLADFIGLPCRIAQGCKYCSAPHRSSCLV
KIDNERRFVREYVVDLVVEPGRLSSPDSSINGQLLSSVPSPFKTSCTMSSANYATPAASWNRAI
SGDRRNSILSNPQYSVAKYCVAEEKSSVQVATKEAMLPKCGQITQNGNCNKNSMAVFEVSKQMK
AMEISSESGDKDNISSATPLKRLSIEPSFCADWLEISWDEIELKERVGAGSFGTVYRADWHGSD
VAVKVLTDQDVGEAQLKEFLREIAIMKRVRHPNVVLFMGAVTKCPHLSIVTEYLPRGSLFRLIN
KASAGEMLDLRRRLRMALDVAKGINYLHCLNPPIVHWDLKTPNMLVDKNWSVKVNGCLSWGDKI
AHGFYNILGVDPHVWAMCNAAAEDGRRLPTLVALRAVDSGESSVLEVVLVDKCGDPALADLERR
ALDLYRAAGVSLDLVRHLAVLVSDHMGGALRSEDGDLFMRWKAVSKQLRKRHRCVVVPIGSLSI
GFCRHRAILFKSLADFIGLPCRIAQGCKYCSAPHRSSCLVKIDNERRFVREYVVDLVVEPGRLS
SPDSSINGQLLSSVPSPFKTSCTMSSANYATPAASWNRAISGDRRNSILSNPQYSVAKYCVAEE
KSSVQVATKEAMLPKCGQITQNGNCNKNSMAVFEVSKQMKAMEISSESGDKDNISSATPLKRLS
IEPSFCADWLEISWDEIELKERVGAGSFGTVYRADWHGSDVAVKVLTDQDVGEAQLKEFLREIA
IMKRVRHPNVVLFMGAVTKCPHLSIVTEYLPRGSLFRLINKASAGEMLDLRRRLRMALDVAKGI
NYLHCLNPPIVHWDLKTPNMLVDKNWSVKVNGCLSWGDKIAHGFYNILGVDPHVWAMCNAAAED
GRRLPTLVALRAVDSGESSVLEVVLVDKCGDPALADLERRALDLYRAAGVSLDLVRHLAVLVSD
HMGGALRSEDGDLFMRWKAVSKQLRKRHRCVVVPIGSLSIGFCRHRAILFKSLADFIGLPCRIA
QGCKYCSAPHRSSCLVKIDNERRFVREYVVDLVVEPGRLSSPDSSINGQLLSSVPSPFKTSCTM
SSANYATPAASWNRAISGDRRNSILSNPQYSVAKYCVAEEKSSVQVATKEAMLPKCGQITQNGN
CNKNSMAVFEVSKQMKAMEISSESGDKDNISSATPLKRLSIEPSFCADWLEISWDEIELKERVG
AGSFGTVYRADWHGSDVAVKVLTDQDVGEAQLKEFLREIAIMKRVRHPNVVLFMGAVTKCPHLS
IVTEYLPRGSLFRLINKASAGEMLDLRRRLRMALDVAKGINYLHCLNPPIVHWDLKTPNMLVDK
NWSVK(+)
MPTFVDSNRVSAQREPLPSHQQGICWRNARFKASFAHGVRCCERHQLSPLPESSNCTLGFENAK
HAGGQELVREGERVLVVGGQDRARVLQHPGGGPARVGDVQRCGGGRPAAADAGGAPGGGQRRVV
GAGGGARRQVRRPSARRPRAPGPRPLPRRRRLPRPRPPPRRPRLRPHGGRVAVGGRGPVHAVEG
GEQAAEEAAQVRRRPHRQPLHRLLPPPRHPLQEPRRLHRPSLPDRAGLQVLLRAAPLVLPRQDR
QREKVCKGVRRRPRR*(+)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	30975558-30978725(+) 30978318-30977307(+)
Potential amino acid sequence	MCNAAAEDGRRLPTLVALRAVDSGESSVLEVVLVDKCGDPALADLERRALDLYRAAGVSLDLVR HLAVLVSDHMGGALRSEDGDLFMRWKAVSKQLRKRHRCVVVPIGSLSIGFCRHRAILFKSLADF IGLPCRIAQGCKYCSAPHRSSCLVKIDNERRFVREYVVDLVVEPGRLSSPDSSINGQLLSSVPS PFKTSCTMSSANYATPAASWNRAISGDRRNSILSNPQYSVAKYCVAEEKSSVQVATKEAMLPKC GQITQNGNCNKNSMAVFEVSKQMKAMEISSESGDKDNISSATPLKRLSIEPSFCADWLEISWDE IELKERVGAGSFGTVYRADWHGSDVAVKVLTDQDVGEAQLKEFLREIAIMKRVRHPNVVLFMGA VTKCPHLSIVTEYLPRGSLFRLINKASAGEMLDLRRRLRMALDVAKGINYLHCLNPPIVHWDLK TPNMLVDKNWSVKVNGCLSWGDKIAHGFYNILGVDPHVWAMCNAAAEDGRRLPTLVALRAVDSG ESSVLEVVLVDKCGDPALADLERRALDLYRAAGVSLDLVRHLAVLVSDHMGGALRSEDGDLFMR WKAVSKQLRKRHRCVVVPIGSLSIGFCRHRAILFKSLADFIGLPCRIAQGCKYCSAPHRSSCLV KIDNERRFVREYVVDLVVEPGRLSSPDSSINGQLLSSVPSPFKTSCTMSSANYATPAASWNRAI SGDRRNSILSNPQYSVAKYCVAEEKSSVQVATKEAMLPKCGQITQNGNCNKNSMAVFEVSKQMK AMEISSESGDKDNISSATPLKRLSIEPSFCADWLEISWDEIELKERVGAGSFGTVYRADWHGSD VAVKVLTDQDVGEAQLKEFLREIAIMKRVRHPNVVLFMGAVTKCPHLSIVTEYLPRGSLFRLIN KASAGEMLDLRRRLRMALDVAKGINYLHCLNPPIVHWDLKTPNMLVDKNWSVKVNGCLSWGDKI AHGFYNILGVDPHVWAMCNAAAEDGRRLPTLVALRAVDSGESSVLEVVLVDKCGDPALADLERR ALDLYRAAGVSLDLVRHLAVLVSDHMGGALRSEDGDLFMRWKAVSKQLRKRHRCVVVPIGSLSI GFCRHRAILFKSLADFIGLPCRIAQGCKYCSAPHRSSCLVKIDNERRFVREYVVDLVVEPGRLS SPDSSINGQLLSSVPSPFKTSCTMSSANYATPAASWNRAISGDRRNSILSNPQYSVAKYCVAEE KSSVQVATKEAMLPKCGQITQNGNCNKNSMAVFEVSKQMKAMEISSESGDKDNISSATPLKRLS IEPSFCADWLEISWDEIELKERVGAGSFGTVYRADWHGSDVAVKVLTDQDVGEAQLKEFLREIA IMKRVRHPNVVLFMGAVTKCPHLSIVTEYLPRGSLFRLINKASAGEMLDLRRRLRMALDVAKGI NYLHCLNPPIVHWDLKTPNMLVDKNWSVKVNGCLSWGDKIAHGFYNILGVDPHVWAMCNAAAED GRRLPTLVALRAVDSGESSVLEVVLVDKCGDPALADLERRALDLYRAAGVSLDLVRHLAVLVSD HMGGALRSEDGDLFMRWKAVSKQLRKRHRCVVVPIGSLSIGFCRHRAILFKSLADFIGLPCRIA QGCKYCSAPHRSSCLVKIDNERRFVREYVVDLVVEPGRLSSPDSSINGQLLSSVPSPFKTSCTM SSANYATPAASWNRAISGDRRNSILSNPQYSVAKYCVAEEKSSVQVATKEAMLPKCGQITQNGN CNKNSMAVFEVSKQMKAMEISSESGDKDNISSATPLKRLSIEPSFCADWLEISWDEIELKERVG AGSFGTVYRADWHGSDVAVKVLTDQDVGEAQLKEFLREIAIMKRVRHPNVVLFMGAVTKCPHLS IVTEYLPRGSLFRLINKASAGEMLDLRRRLRMALDVAKGINYLHCLNPPIVHWDLKTPNMLVDK NWSVK(+) MPTFVDSNRVSAQREPLPSHQQGICWRNARFKASFAHGVRCCERHQLSPLPESSNCTLGFENAK HAGGQELVREGERVLVVGGQDRARVLQHPGGGPARVGDVQRCGGGRPAAADAGGAPGGGQRRVV GAGGGARRQVRRPSARRPRAPGPRPLPRRRRLPRPRPPPRRPRLRPHGGRVAVGGRGPVHAVEG GEQAAEEAAQVRRRPHRQPLHRLLPPPRHPLQEPRRLHRPSLPDRAGLQVLLRAAPLVLPRQDR QREKVCKGVRRRPRR*(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os04g0610900_circ_g.2

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