Detail information of Os03g0238700_circ_g.2


General Information
CircRNA Name Os03g0238700_circ_g.2
ID in PlantcircBase osa_circ_018777
Alias Os_ciR9147
Organism Oryza sativa
Position chr3: 7324370-7324520  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method find_circ
Parent gene Os03g0238600
Parent gene annotation Similar to Purple acid phosphatase. (Os03t0238600-01)
Parent gene strand +
Alternative splicing Os03g0238700_circ_g.1 Os03g0238700_circ_g.3
Support reads 2
Tissues root
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0238700-01:1
Os03t0238600-01:1
Os03t0238700-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTTCAGGTCAATGGCATCGACTTCTACATCAATGGGCACGACCACTGCCTGGAACACATTAGC
AGCAGAGACAGgttatacagaagttgcctcgatattaagttctgaaggatccacaaaaagagta
cttccttatcactgtttcatgga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTATACAGAAGTTGCCTCGATATTAAGTTCTGAAGGATCCACAAAAAGAGTACTTCCTTATCA
CTGTTTCATGGAATTTCAGGTCAATGGCATCGACTTCTACATCAATGGGCACGACCACTGCCTG
GAACACATTAGCAGCAGAGACAG
Conservation Information
Conserved circRNAs NA
PMCS 0.321876656
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015