Detail information of Os10g0208500_circ_g.1


General Information
CircRNA Name Os10g0208500_circ_g.1
ID in PlantcircBase osa_circ_006435
Alias NA
Organism Oryza sativa
Position chr10: 7687610-7688867  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer
Parent gene Os10g0208500
Parent gene annotation Hypothetical protein. (Os10t0208500-01);Oxoglutarate/iron-depend
ent oxygenase domain containing protein. (Os10t0208500-02);Hypot
hetical conserved gene. (Os10t0208500-03)
Parent gene strand +
Alternative splicing NA
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   GC-AG
Number of exons covered Os10t0208500-02:1
Os10t0208500-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATCAGTTTATGCTAGGTCTTAGGTTTGTGAAATGATATTTGAAAACTCATCTTTACGCAAAGT
AATCATAGCCACTCTTTGTAATACCCTTACATTACTgcaagtcatcactaatctttgagcatgt
tgaacccattgcgaacttattttggatttaaaataaagtttgcatgctatatggatatatgtga
atgcccta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCAAGTCATCACTAATCTTTGAGCATGTTGAACCCATTGCGAACTTATTTTGGATTTAAAATAA
AGTTTGCATGCTATATGGATATATGTGAATGCCCTACTTCGCTATATGCCATGCCTTTGATATT
GATGATCCATGCAATCTTTGTAATCCATGATATCGTGTGTCCTTATTCAATACTTGATAAATGC
TTAGCCATGCTACTTTAGAATCATGCATATTCATATTTATCAAAATGCTTTATGCTTGGGCAAC
TACCTTAGGGAAGGTAGTTGAGATACGGCATGTGGAGACATGAGCACCACATTGCCATGACATT
GGTGACATGATTTGTGAAAGGAAAAATGAAACTAAACAACTGTTTTCGACTGGGGCGGCTGGAG
GACTTGGGTGGTGTCCGGAAAAGGCTAGTGCCGTCCCTGGTCAGTTAAGGACCGAGCCATGAAG
TTAAGCATGAAACGACCCCCGTACAACTGTACTTCTCGTGTGGGTATAGACCTAACGGAGTAAA
TAGCCGAGCGGAGGCGGTACCCAAGCCATAGTGGTTTTCTTGTTGTGTGTGAGGCAGGGCCTAC
GGTGGGGCAGCCATTGGTAGGACCGCGAGGGGCGGGTGCCTACAGTGGTGTCGCCATCGGTAGG
ACTGCCATGTGCAAACCTAAACTTAACTATAACTTAATGAATGTGTGAGTCTTTCCCCCTCGGG
AGCGCCAGAACTCCTCTCACTGCTAGAAACCTTGGACGCCTAGAGTGCATGAGGACTAAAGTTC
ATGGAGCGGGTACTACCAAAGTGAGGTTATTGAAAGGCTTTGCCGTGGCAAGTCTCATTCGTTG
GGACGTAGGCTCATGTGTTGGGCAAGTCGCGGAGTACGGGTAAAGTGTACATCCACTGCAGTGT
GAGTAAACCAATCTATTCGAATAGCCGTGCTCACGGTTATTGAGCACCGGGACATGTATTACAC
TTGGCTAGACTCTAAATTCTTAAAATGATGGGTGGGATATTGCATGATGATTTTGTACTGGTGG
ATCAACTTCTCAAGATGCGAGAAGGGGTAGACCCCCACAAAACCATGACGACCAGTGGCAGGAA
GCTATCATTGGGAACACAATGGATGGTGGACAGAACCGTCGCTGTTTAATGAACAATGGAATTA
AAACTTGATCAGTTTATGCTAGGTCTTAGGTTTGTGAAATGATATTTGAAAACTCATCTTTACG
CAAAGTAATCATAGCCACTCTTTGTAATACCCTTACATTACT
Conservation Information
Conserved circRNAs osi_circ_014267 osi_circ_016240 osi_circ_008900
PMCS 0.351246655
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017