Detail information of BGIOSGA022967_circ_ig.2


General Information
CircRNA Name BGIOSGA022967_circ_ig.2
ID in PlantcircBase osi_circ_016240
Alias Chr06:12830295_12831545(MH63RS2), Chr06:12830295_12831545(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr6: 18404941-18406191  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method find_circ, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   TT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAGTCTATGCTAGATAATAGGCTTGTGAAAAGAATTGTTAAACTAGCTTTATGCAAATAAACCA
ATGGCCATACTTTGAATACCACTATCATATGCATTGtcatcactaatctttgagcatgttgaac
ctattgcgaaaattatgttgatttaaataaaattgcacgctatatatataaatatgaatgccct
acttgtta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TCATCACTAATCTTTGAGCATGTTGAACCTATTGCGAAAATTATGTTGATTTAAATAAAATTGC
ACGCTATATATATAAATATGAATGCCCTACTTGTTATATATGCCATGCCTTGATATTGATTATC
CGTATGACCATTGCAAACTGTGCTAACGTGTGTACTTAGTCGATATTGAACAAATGCTTAGTCA
TGCTAATTAGAATCATGCATTCTCATATTTATCAAGTGATATATGCTTGGGCAACTACCTTAGG
GAAGGTAGTTGAGATGCGGCATGTGGAGGCGTGGACACAACATTGCCATGACAAGGATAACATG
AATTGTGAAAAGAGAAACAAAATTAAACACTGTTTTTGACCGGGGCGGCTAGGGTACTTGGGTG
GTGTCCGGAAAAGGCTAGTGCTGTCCCTGGTTAGTTAAGGACCGAGCCATAAAGTTAAGCATGA
AACGACCCTCGTACAACCGTACTTCTCGTATGGGTATAGACCTAGCGGAGTACATAGCCGAGCG
GAGGCAGTATCCCTGCATAGTGGTTATTCTTGATGTGTGTGGGGCAGGGCCTACGGTGGGGCAG
CCATTGATGGGACCGCGAGGGGCGACTGCTTACAGTGGTGTCGCCATCGGTAGGACTGCCATGT
GTAAACTTAACTTAACTAAAACTTAATGCATGTGTGAGTCTTCCCTTCCCGGGAGCGCCAGAAC
TCCTCTCACTGCTAGAAACTTATGACGCCTAGAGTGCATGAGGATGTAAGTTCATGGAGCGGGT
ACTGTCAACGTGAGGTTATTGAAAGGCTTTGCCATGGCAAGTCTCATTCGTTGGGACGTAGGCT
CATGTGTTGGGCAAGTTGCGGAGTACGGGTAAAGTGTACATCCACTGCAGTGTGAGTAAACCAA
ATCTATTCGAATAGCCGTGCTCACGGATAATGAGCACCGGGACATGTATTATACTTGGCTAGAC
TCTAAATTCTTAAATTGATTGGGATGGGATATGCATGATGATTTTGTACTGGCGGATCAACTTC
TCGAGAGGCGAGAAGGAGTAAACTCCAGAAAACCATTACGGCCAGTAACGGGAAGCCATCTTTG
GGAAGACAATGGATGGTGAACAAAACCGTTGCTGTGTAATAAATACTGGAATTAAAACTGGACT
AGTCTATGCTAGATAATAGGCTTGTGAAAAGAATTGTTAAACTAGCTTTATGCAAATAAACCAA
TGGCCATACTTTGAATACCACTATCATATGCATTG
Conservation Information
Conserved circRNAs osa_circ_006435
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021