Detail information of Os03g0827700_circ_g.7


General Information
CircRNA Name Os03g0827700_circ_g.7
ID in PlantcircBase osa_circ_022544
Alias Os_ciR4761
Organism Oryza sativa
Position chr3: 34769466-34770369  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method KNIFE, PcircRNA_finder, circRNA_finder, find_circ
Parent gene Os03g0827700
Parent gene annotation Similar to ATP-dependent RNA helicase. (Os03t0827700-01);Similar
to cDNA clone:J013043E01, full insert sequence. (Os03t0827700-0
2)
Parent gene strand +
Alternative splicing Os03g0827700_circ_g.4 Os03g0827700_circ_g.5 Os03g0827700_circ_g.6 Os03g0827700_circ_g.8 Os03g0827700_circ_g.9 Os03g0827700_circ_g.10 Os03g0827700_circ_g.11 Os03g0827700_circ_g.12 Os03g0827700_circ_g.13
Support reads 4/2
Tissues root/pistil
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0827700-02:2
Os03t0827700-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGGGTTCTTTTCTCCTAGATCTGTTACTGGCTTTCTGTCTGATGTTTCTTCAGCTGCTGCTGAT
GAAGTTGGCAAAATTTTCCTTACAGCAGATGAGAAGattatccattatgaattgcccaatgatc
cagagacttttgttcatcgttctggacgcactggccgagctgggaaagcaggaactgcaatctt
gatgttca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 522
Transcript exons: 34769466-34769843,34770226-34770369
ATTATCCATTATGAATTGCCCAATGATCCAGAGACTTTTGTTCATCGTTCTGGACGCACTGGCC
GAGCTGGGAAAGCAGGAACTGCAATCTTGATGTTCACAAACAGCCAGAGAAGGACAGTTAGATC
ACTTGAGCGTGATGTTGGATGCAGATTTGACTTCATAAGTCCTCCAGCAATTGAGGATGTGCTG
GAGTCCTCTGCTGAACATGTCATAGCTACTTTAAGAGGTGTGCACACGGAGTCGATTCAGTACT
TCATTCCAGCAGCTGAAAGACTGCAAGAAGAATTAGGACCTAATGCTCTTGCTTCTGCATTGGC
ACATCTGAGTGGATTTTCTCAGCCACCCTCTTCACGTTCTCTTATCAGTCATGAGCAGGGATGG
GTGACTTTGCAACTAACTAGAGATCCAGGATATGGAAGGGGGTTCTTTTCTCCTAGATCTGTTA
CTGGCTTTCTGTCTGATGTTTCTTCAGCTGCTGCTGATGAAGTTGGCAAAATTTTCCTTACAGC
AGATGAGAAG

Genomic sequence ATTATCCATTATGAATTGCCCAATGATCCAGAGACTTTTGTTCATCGTTCTGGACGCACTGGCC
GAGCTGGGAAAGCAGGAACTGCAATCTTGATGTTCACAAACAGCCAGAGAAGGACAGTTAGATC
ACTTGAGCGTGATGTTGGATGCAGATTTGACTTCATAAGTCCTCCAGCAATTGAGGATGTGCTG
GAGTCCTCTGCTGAACATGTCATAGCTACTTTAAGAGGTGTGCACACGGAGTCGATTCAGTACT
TCATTCCAGCAGCTGAAAGACTGCAAGAAGAATTAGGACCTAATGCTCTTGCTTCTGCATTGGC
ACATCTGAGTGGATTTTCTCAGCCACCCTCTTCACGTTCTCTTATCAGTCATGAGCAGGTAAGA
ATTAATAAGTGACCCGAGGAAATTACATGTATCCATCATTAACTGATATTTTACTATTTCTACC
ATTGTATCGAACACTTCCTTTTTCCCTACCTTAGTTATAGCTACCCATCAACTTCATCCAGCTG
TCCTGATTTATGCCTTCTACATTTGAGGATTTATATCCACCTAATGTTATATGAATACAATGGG
CTACTAGTACTGATTACTGAAATTGCATCTTTTATAAATTTATAATGGGCAATCAAATAATTGT
ATAGAAAAGCTCCACTTTTTTTTTTGAGTTGCTCAAAGTTTTGTTGTGCGTTTACCGTTTATAT
TTTCTTTTTAAAGCTAGAAGCACTCATATGATTTCTTACCCTCTATTAAAACACAGGGATGGGT
GACTTTGCAACTAACTAGAGATCCAGGATATGGAAGGGGGTTCTTTTCTCCTAGATCTGTTACT
GGCTTTCTGTCTGATGTTTCTTCAGCTGCTGCTGATGAAGTTGGCAAAATTTTCCTTACAGCAG
ATGAGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.43222749
Functional Information
Coding potential Y
Potential coding position 34769560-34770366(+)
34770264-34769556(+)
34769512-34770321(-)
Potential amino acid sequence MFTNSQRRTVRSLERDVGCRFDFISPPAIEDVLESSAEHVIATLRGVHTESIQYFIPAAERLQE
ELGPNALASALAHLSGFSQPPSSRSLISHEQGWVTLQLTRDPGYGRGFFSPRSVTGFLSDVSSA
AADEVGKIFLTADEKIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNSQRRTVRSLERDVG
CRFDFISPPAIEDVLESSAEHVIATLRGVHTESIQYFIPAAERLQEELGPNALASALAHLSGFS
QPPSSRSLISHEQGWVTLQLTRDPGYGRGFFSPRSVTGFLSDVSSAAADEVGKIFLTADEKIIH
YELPNDPETFVHRSGRTGRAGKAGTAILMFTNSQRRTVRSLERDVGCRFDFISPPAIEDVLESS
AEHVIATLRGVHTESIQYFIPAAERLQEELGPNALASALAHLSGFSQPPSSRSLISHEQGWVTL
QLTRDPGYGRGFFSPRSVTGFLSDVSSAAADEVGKIFLTADEKIIHYELPNDPETFVHRSGRTG
RAGKAGTAILMFTNSQRRTVRSLERDVGCRFDFISPPAIEDVLESSAEHVIATLRGVHTESIQY
FIPAAERLQEELGPNALASALAHLSGFSQPPSSRSLISHEQGWVTLQLTRDPGYGRGFFSPRSV
TGFLSDVSSAAADEVGKIFLTADEK(+)
MEGGSFLLDLLLAFCLMFLQLLLMKLAKFSLQQMRRLSIMNCPMIQRLLFIVLDALAELGKQEL
QS*(+)
MNKSLWIIGQFIMDNLLICCKENFANFISSS*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017