Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os10g0471350_circ_g.2 |
ID in PlantcircBase | osa_circ_007072 |
Alias | NA |
Organism | Oryza sativa |
Position | chr10: 17477083-17479164 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os10g0471350 |
Parent gene annotation |
Similar to helicase domain-containing protein. (Os10t0471350-01) |
Parent gene strand | - |
Alternative splicing | Os10g0471350_circ_g.3 Os10g0471350_circ_g.4 Os10g0471350_circ_g.5 |
Support reads | 1 |
Tissues | shoot |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os10t0471350-01:5 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.301388457 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
17479010-17477121(+) 17479143-17477137(+) 17479004-17477085(-) |
Potential amino acid sequence |
MEWNNQESIGISKEIIPLNLIQKFRNFIPTSKEHKDCTFSFMTTDVLNCTFNLQSSCFANKPNV R*(+) MYSIVPSTFNPLVLLTNPMSDSRSKN*(+) MPTVNQREIFDRPPANMRKIVLATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWI SKASAHQRRGRAGRVQPGACYRLYPKVIYDAMPQFQLPEILRTPLQELCLTIKSLQLGAVASFL AKALQPPDPLSVNNAIELLKTVGALDDVEELTSLGRHLCTLPLDPNIGKMLLIGSVFQCLDPAL TIAAALAYRNPFVLPIDRKEEADAVKRSFAGDSCSDHIALVKAFEAWKEARRSGRERSFCWENF LSPMTLQMMDDMRNQFFDLLSDIGFVSKTRGLKVEGTIEYICRHEGEGAILVFLTGWDEISKLL DKIKGNNLLGNSNRFLVIPLHGSMPTVNQREIFDRPPANMRKIVLATNIAESSITIDDVVYVID CGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGACYRLYPKVIYDAMPQFQLPEIL RTPLQELCLTIKSLQLGAVASFLAKALQPPDPLSVNNAIELLKTVGALDDVEELTSLGRHLCTL PLDPNIGKMLLIGSVFQCLDPALTIAAALAYRNPFVLPIDRKEEADAVKRSFAGDSCSDHIALV KAFEAWKEARRSGRERSFCWENFLSPMTLQMMDDMRNQFFDLLSDIGFVSKTRGLKVEGTIEYI CRHEGEGAILVFLTGWDEISKLLDKIKGNNLLGNSNRFLVIPLHGSMPTVNQREIFDRPPANMR KIVLATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPG ACYRLYPKVIYDAMPQFQLPEILRTPLQELCLTIKSLQLGAVASFLAKALQPPDPLSVNNAIEL LKTVGALDDVEELTSLGRHLCTLPLDPNIGKMLLIGSVFQCLDPALTIAAALAYRNPFVLPIDR KEEADAVKRSFAGDSCSDHIALVKAFEAWKEARRSGRERSFCWENFLSPMTLQMMDDMRNQFFD LLSDIGFVSKTRGLKVEGTIEYICRHEGEGAILVFLTGWDEISKLLDKIKGNNLLGNSNRFLVI PLHGSMPTVNQREIFDRPPANMRKIVLATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACL LPSWISKASAHQRRGRAGRVQPGACYRLYPKVIYDAMPQFQLPEILRTPLQELCLTIKSLQLGA VASFLAKALQPPDPLSVNNAIELLKTVGALDDVEELTSLGRHLCTLPLDPNIGKMLLIGSVFQC LDPALTIAAALAYRNPFVLPIDRKEEADAVKRSFAGDSCSDHIALVKAFEAWKEARRSGRERSF CWENFLSPMTLQMMDDMRNQFFDLLSDIGFVSKTRGLK(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |