Detail information of Os10g0471350_circ_g.2


General Information
CircRNA Name Os10g0471350_circ_g.2
ID in PlantcircBase osa_circ_007072
Alias NA
Organism Oryza sativa
Position chr10: 17477083-17479164  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os10g0471350
Parent gene annotation Similar to helicase domain-containing protein. (Os10t0471350-01)
Parent gene strand -
Alternative splicing Os10g0471350_circ_g.3 Os10g0471350_circ_g.4 Os10g0471350_circ_g.5
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os10t0471350-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTTATCCAAAAGTTTCGAAATTTCATCCCAACCAGTAAGGAACACAAGGATTGCACCTTCTCC
TTCATGACGACAGATGTACTCAATTGTACCTTCAACcttcaatcctcttgttttgctaacaaac
ccaatgtcagatagtagatcaaaaaactgattacgcatgtcatccatcatctgcagggtcatgg
gtgaaagg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1029
Transcript exons: 17477083-17477269,17477532-17477724,17477829-17478102,17
478180-17478339,17478950-17479164
CTTCAATCCTCTTGTTTTGCTAACAAACCCAATGTCAGATAGTAGATCAAAAAACTGATTACGC
ATGTCATCCATCATCTGCAGGGTCATGGGTGAAAGGAAATTTTCCCAGCAGAAAGAGCGTTCTC
TTCCACTGCGTCTTGCTTCCTTCCATGCTTCGAACGCCTTAACAAGAGCAATGTGATCACTGCA
GGAGTCACCAGCAAATGATCTTTTGACAGCATCAGCTTCTTCTTTCCTATCTATTGGGAGCACA
AATGGATTACGATATGCAAGAGCAGCAGCGATTGTTAATGCAGGATCCAGACACTGAAAAACAG
ATCCAATAAGCAGCATTTTTCCAATGTTTGGATCTAGCGGAAGTGTACAAAGATGTCGCCCTAA
AGAAGTCAGCTCCTCCACGTCATCCAATGCTCCAACGGTTTTCAAAAGCTCGATCGCATTATTA
ACAGAAAGCGGGTCTGGTGGCTGCAGTGCCTTGGCTAAGAAAGAGGCTACAGCTCCAAGCTGTA
AGCTTTTGATAGTAAGACAGAGCTCTTGCAAAGGAGTCCTAAGAATTTCAGGTAACTGAAACTG
TGGCATCGCATCATAAATGACTTTAGGATACAGCCTATAGCAAGCACCAGGCTGAACACGTCCT
GCACGACCTCGCCTCTGATGGGCAGAAGCTTTTGATATCCATGATGGTAGAAGGCATGCAAGCT
TATTTAAGGCATCATAACTTGTTTCCTTTGCTTTGCCACAATCAATTACATAGACAACATCATC
TATTGTAATACTGCTTTCTGCAATATTTGTTGCCAAAACAATTTTCCTCATATTGGCTGGTGGT
CTATCAAAAATTTCACGCTGATTGACAGTGGGCATAGAACCATGGAGTGGAATAACCAGGAATC
TATTGGAATTTCCAAGGAGATTATTCCCCTTAATCTTATCCAAAAGTTTCGAAATTTCATCCCA
ACCAGTAAGGAACACAAGGATTGCACCTTCTCCTTCATGACGACAGATGTACTCAATTGTACCT
TCAAC

Genomic sequence CTTCAATCCTCTTGTTTTGCTAACAAACCCAATGTCAGATAGTAGATCAAAAAACTGATTACGC
ATGTCATCCATCATCTGCAGGGTCATGGGTGAAAGGAAATTTTCCCAGCAGAAAGAGCGTTCTC
TTCCACTGCGTCTTGCTTCCTTCCATGCTTCGAACGCCTTAACAAGAGCAATGTGATCACTGGA
AAAATAAGTTACAAAAAATTATCAACATAACATTACTTTCAAAACTAAAGTACTTGTAGAAATG
TTATAATTGTCAAAGTAAGTTATCAGCGGTAACCTAGTACGCAACCCAGCATTCTACATCAATT
TGGTACTTATGTCTGAGGTAATAACAGTATAACACTCACATTCTTTGCATTATATGGTGACAAA
GATATTTTAGTACAGGTAAGACAAAAGGAATCAATACGGAACAGAGAAAAGATTATATTAATTA
CCTGCAGGAGTCACCAGCAAATGATCTTTTGACAGCATCAGCTTCTTCTTTCCTATCTATTGGG
AGCACAAATGGATTACGATATGCAAGAGCAGCAGCGATTGTTAATGCAGGATCCAGACACTGAA
AAACAGATCCAATAAGCAGCATTTTTCCAATGTTTGGATCTAGCGGAAGTGTACAAAGATGTCG
CCCTGCATACACAGAAGAAGACACACAGAGTAAATAAAAACAGTTAGAATAGAATCAAGAAAGA
GATCCACAATACAAGACTAAAAGGTGCAGCAAAATTTCAAACCTAAAGAAGTCAGCTCCTCCAC
GTCATCCAATGCTCCAACGGTTTTCAAAAGCTCGATCGCATTATTAACAGAAAGCGGGTCTGGT
GGCTGCAGTGCCTTGGCTAAGAAAGAGGCTACAGCTCCAAGCTGTAAGCTTTTGATAGTAAGAC
AGAGCTCTTGCAAAGGAGTCCTAAGAATTTCAGGTAACTGAAACTGTGGCATCGCATCATAAAT
GACTTTAGGATACAGCCTATAGCAAGCACCAGGCTGAACACGTCCTGCACGACCTCGCCTCTGT
GTAACATAACCAAAATCCATTTAGTACATCTATTGTTGGATTTTTCAACTTTCCATAAACTGTG
ACAGTGTACCTGATGGGCAGAAGCTTTTGATATCCATGATGGTAGAAGGCATGCAAGCTTATTT
AAGGCATCATAACTTGTTTCCTTTGCTTTGCCACAATCAATTACATAGACAACATCATCTATTG
TAATACTGCTTTCTGCAATATTTGTTGCCAAAACAATTTTCCTGAAAAATACATATGCAACAGC
AATAAGCAATACAGGTTGTTCAAATAAAATAGGATTAGCCATTAAGACACAGCTAGCTCAAATG
TAACATAAAAAGCGTCAAAATAAAACAAAATAAAATGGTAATCAAACACAATACATAAATAATG
AATAATGAAGCAAAAAACAAAAAACCTGAATGTCAGTGAATAAGATAGCTTTTTAAGAAACCCA
GATAGCTCAAAACTGGGACTTGGAAAAATACAGAAGATATGTCATTGCTAAATAAGCCTAGCTT
AAGTTATTTTATTAACATTACATAATTCTGTACCTTCACAAGTTCACTTGCCAACCATAGTATA
TCAAATATGCCAACTATATGTACCAGATCTGGCTTTAATTTTATAGATACTGAAACTGGAAATT
AGAAGGGTAGGAAACCCAGCATGCTTCTATAAGTTCCTAATAAAAGTGTAATAGCAGAAATATA
AATAGATAACATGAGAAGAAATGCAAGTAGAAAGGCAAAAACTTGGCTATAACATATTAGCCAT
AACAACTAGACAGCAAAGATTCATGCATCCAAGTCCAATCTTCTATATTTCTAGGTAGGTACCT
AGGTGATTTACCTCATATTGGCTGGTGGTCTATCAAAAATTTCACGCTGATTGACAGTGGGCAT
AGAACCATGGAGTGGAATAACCAGGAATCTATTGGAATTTCCAAGGAGATTATTCCCCTTAATC
TTATCCAAAAGTTTCGAAATTTCATCCCAACCAGTAAGGAACACAAGGATTGCACCTTCTCCTT
CATGACGACAGATGTACTCAATTGTACCTTCAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.301388457
Functional Information
Coding potential Y
Potential coding position 17479010-17477121(+)
17479143-17477137(+)
17479004-17477085(-)
Potential amino acid sequence MEWNNQESIGISKEIIPLNLIQKFRNFIPTSKEHKDCTFSFMTTDVLNCTFNLQSSCFANKPNV
R*(+)
MYSIVPSTFNPLVLLTNPMSDSRSKN*(+)
MPTVNQREIFDRPPANMRKIVLATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWI
SKASAHQRRGRAGRVQPGACYRLYPKVIYDAMPQFQLPEILRTPLQELCLTIKSLQLGAVASFL
AKALQPPDPLSVNNAIELLKTVGALDDVEELTSLGRHLCTLPLDPNIGKMLLIGSVFQCLDPAL
TIAAALAYRNPFVLPIDRKEEADAVKRSFAGDSCSDHIALVKAFEAWKEARRSGRERSFCWENF
LSPMTLQMMDDMRNQFFDLLSDIGFVSKTRGLKVEGTIEYICRHEGEGAILVFLTGWDEISKLL
DKIKGNNLLGNSNRFLVIPLHGSMPTVNQREIFDRPPANMRKIVLATNIAESSITIDDVVYVID
CGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGACYRLYPKVIYDAMPQFQLPEIL
RTPLQELCLTIKSLQLGAVASFLAKALQPPDPLSVNNAIELLKTVGALDDVEELTSLGRHLCTL
PLDPNIGKMLLIGSVFQCLDPALTIAAALAYRNPFVLPIDRKEEADAVKRSFAGDSCSDHIALV
KAFEAWKEARRSGRERSFCWENFLSPMTLQMMDDMRNQFFDLLSDIGFVSKTRGLKVEGTIEYI
CRHEGEGAILVFLTGWDEISKLLDKIKGNNLLGNSNRFLVIPLHGSMPTVNQREIFDRPPANMR
KIVLATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPG
ACYRLYPKVIYDAMPQFQLPEILRTPLQELCLTIKSLQLGAVASFLAKALQPPDPLSVNNAIEL
LKTVGALDDVEELTSLGRHLCTLPLDPNIGKMLLIGSVFQCLDPALTIAAALAYRNPFVLPIDR
KEEADAVKRSFAGDSCSDHIALVKAFEAWKEARRSGRERSFCWENFLSPMTLQMMDDMRNQFFD
LLSDIGFVSKTRGLKVEGTIEYICRHEGEGAILVFLTGWDEISKLLDKIKGNNLLGNSNRFLVI
PLHGSMPTVNQREIFDRPPANMRKIVLATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACL
LPSWISKASAHQRRGRAGRVQPGACYRLYPKVIYDAMPQFQLPEILRTPLQELCLTIKSLQLGA
VASFLAKALQPPDPLSVNNAIELLKTVGALDDVEELTSLGRHLCTLPLDPNIGKMLLIGSVFQC
LDPALTIAAALAYRNPFVLPIDRKEEADAVKRSFAGDSCSDHIALVKAFEAWKEARRSGRERSF
CWENFLSPMTLQMMDDMRNQFFDLLSDIGFVSKTRGLK(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017