Detail information of Os07g0438550_circ_igg.3


General Information
CircRNA Name Os07g0438550_circ_igg.3
ID in PlantcircBase osa_circ_033610
Alias NA
Organism Oryza sativa
Position chr7: 14729489-14730420  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os07g0438500_circ_g.4 Os07g0438500_circ_igg.1 Os07g0438550_circ_igg.1 Os07g0438500_circ_ig.1 Os07g0438500_circ_ig.2 Os07g0438500_circ_ig.4
Support reads 1
Tissues shoot
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTTGTCTACAGGTTGATGTATTTTCCTTTGGCATTGTTATGTGGGAAATACTTACTGGAGAAG
AACCCTATGCCAATATGCATTATGGCGCAATTATTGgcaaatgaattctggcgggaagctgaaa
ttctctctaagcttcaccatccaaatgttgtggccttctatggtgttgtgaaagatggccctgg
tggtacct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCAAATGAATTCTGGCGGGAAGCTGAAATTCTCTCTAAGCTTCACCATCCAAATGTTGTGGCCT
TCTATGGTGTTGTGAAAGATGGCCCTGGTGGTACCTTGGCAACCGTAACTGAGTTCATGGTTAA
TGGTTCTCTTCGGCATGTCTTGCAGCGCAAGGACAAGTAACTGCTTCCTGTGCTTTTTTTTAAA
AGAAAATTAATTTGCTCGTTTTGGGTGAGTAACAGTGTGCTTTGTTTTCTTACTGAGCAGGTAC
CTTGATCGTCGTAAGCGGCTTATCATAGCAATGGATGCAGCATTTGGGCTGGAGTATTTGCACT
CGAAAAATATCGTGCACTTTGATCTGAAGTGTGATAACTTGCTGGTGAATCTTAAAGATCAATC
TCGTCCTATATGTAAAGTGAGTCACACTTCATTTCTAGTGTTATAGCACTGTTTTATACCATTT
ATTAAATAGTTGCTTTGCTTTTTGATCACTCAGTGGATTTATCATCTCGATTTCTGTTCACTGT
TCAGGTTGGTGATTTTGGCCTATCCAAAATAAAAAGAAACACCCTGGTTTCAGGTGGTGTGAGG
GGGACTCTCCCATGGATGGCACCCGAATTACTCAATGGTAGCAGCAATAAGGTGTCTGAAAAGG
TAAAAACATTTTTCTTGGTTTTCTTTTTTCTTCAATTCTTTCTAGCCATGTTCTTAATGTTCCT
TATGGGTAATGAATCCTCTATCATCAATATGTGCTAGCACTTAAAACAATTCCAGGTTGCAGAT
TTATATGCAATTAATTCAACTATAGCAATATTTTTAGAGTTATGTTTAGGGTACTCAGTCATAT
ATTTGTCTACAGGTTGATGTATTTTCCTTTGGCATTGTTATGTGGGAAATACTTACTGGAGAAG
AACCCTATGCCAATATGCATTATGGCGCAATTATTG
Conservation Information
Conserved circRNAs NA
PMCS 0.187107439
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017