Detail information of Os07g0438500_circ_igg.1


General Information
CircRNA Name Os07g0438500_circ_igg.1
ID in PlantcircBase osa_circ_033606
Alias Os_ciR10889
Organism Oryza sativa
Position chr7: 14727045-14727293  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os07g0438500_circ_g.4 Os07g0438550_circ_igg.1 Os07g0438500_circ_ig.1 Os07g0438500_circ_ig.2 Os07g0438550_circ_igg.3 Os07g0438500_circ_ig.4
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACAGGACAACCCACCTATGACAAAGAATGTTGAAGGGTTTCAGGTTGACAATCCTTATACTAAT
ATGCACGAGATGATGCCATCTGTTCCTGAGTTTGAGgagggagtttatcctttggtacatgcag
agcatgatgcagttaacgtgaagaatgtggctcctcagaatgatgttcatctggaaacttatcc
agtatctt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAGGGAGTTTATCCTTTGGTACATGCAGAGCATGATGCAGTTAACGTGAAGAATGTGGCTCCTC
AGAATGATGTTCATCTGGAAACTTATCCAGTATCTTCTGGCATCAATCTTGATTCTAGTATTTT
GCCTCCAGGTTTCATCTCATCACAGGACAACCCACCTATGACAAAGAATGTTGAAGGGTTTCAG
GTTGACAATCCTTATACTAATATGCACGAGATGATGCCATCTGTTCCTGAGTTTGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.207416332
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015