Detail information of Zm00001d051507_circ_g.3


General Information
CircRNA Name Zm00001d051507_circ_g.3
ID in PlantcircBase zma_circ_008127
Alias Zm04circ00062
Organism Zea mays
Position chr4: 160695780-160699097  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRI2
Parent gene Zm00001d051507
Parent gene annotation Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1
Parent gene strand -
Alternative splicing Zm00001d051507_circ_g.1 Zm00001d051507_circ_g.2
Support reads NA
Tissues leaf, endosperm
Exon boundary   Yes-Yes
Splicing signals   CT-GC
Number of exons covered Zm00001d051507_T044:6
Zm00001d051507_T066:11
Zm00001d051507_T026:11
Zm00001d051507_T007:11
Zm00001d051507_T072:11
Zm00001d051507_T062:6
Zm00001d051507_T075:11
Zm00001d051507_T041:11
Zm00001d051507_T008:10
Zm00001d051507_T058:2
Zm00001d051507_T049:5
Zm00001d051507_T085:3
Zm00001d051507_T006:10
Zm00001d051507_T028:11
Zm00001d051507_T038:4
Zm00001d051507_T084:10
Zm00001d051507_T073:11
Zm00001d051507_T019:10
Zm00001d051507_T009:11
Zm00001d051507_T082:10
Zm00001d051507_T023:10
Zm00001d051507_T015:8
Zm00001d051507_T018:11
Zm00001d051507_T024:11
Zm00001d051507_T005:11
Zm00001d051507_T054:7
Zm00001d051507_T030:11
Zm00001d051507_T012:3
Zm00001d051507_T014:7
Zm00001d051507_T051:11
Zm00001d051507_T037:3
Zm00001d051507_T070:8
Zm00001d051507_T003:11
Zm00001d051507_T022:10
Zm00001d051507_T021:2
Zm00001d051507_T035:10
Zm00001d051507_T039:11
Zm00001d051507_T031:11
Zm00001d051507_T069:8
Zm00001d051507_T076:11
Zm00001d051507_T017:10
Zm00001d051507_T013:4
Zm00001d051507_T043:10
Zm00001d051507_T052:11
Zm00001d051507_T016:10
Zm00001d051507_T074:11
Zm00001d051507_T001:11
Zm00001d051507_T034:9
Zm00001d051507_T053:11
Zm00001d051507_T083:11
Zm00001d051507_T064:7
Zm00001d051507_T061:4
Zm00001d051507_T071:5
Zm00001d051507_T033:11
Zm00001d051507_T047:11
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGCCTAGCTCTTGTCTCATGGTCTAACTTTGACCGGGGACCTTTTGACGCCATCTTTCCAATCC
TATATCATATCTTAGAGCATGAGCACCGAACTGGTActggtcattgatagaagaaatatttccg
ttacttttaccctggaaaaataaaaaaaaggttttgcattacaatcagataatgtgcaatgtcg
aggatttc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGGTCATTGATAGAAGAAATATTTCCGTTACTTTTACCCTGGAAAAATAAAAAAAAGGTTTTG
CATTACAATCAGATAATGTGCAATGTCGAGGATTTCATCCAAAGAATAAAGAATAAAGGCAACA
CATTGAGCACAGATAAGATAAAGAAAACAAGCGTACATGATTCTTCTTCACAAACTCAGCATAA
GAATGGCCATCATCCACTTCCTCAGAAGAATTGCCATCTTCACTTGAAGAGTGAGCAGGTTCAT
GATCACGCCCATTAGCCTGCTTCAAAGAATCTGAAAATAGAAGGGCAAGATCCACATCAATCAT
AAGAAATGCCATCAAATAGTCTGATTAACTTCCTAATACTCTACATGATCTCACCTACAATCAA
AATCTTCGAACCTAAGTTACTTAGCATGTCTTTGCTATCTGGACTGCCTTCCCTGCTAACTGAG
ACATATTGAACTGATCAAATTATCAATTGAGTGTCAAACAATGTCAAACAATGAAAATAAGCTG
ACCTATGTATGGAAGTGGATAAGAGAGAATTGTTGTTGGAGATCACCTTTAGTTTTTGTGTACA
TCTTGAGAATAACATCAAGTGGTAGATCAGCTTCTGCCTCTAAAGCAGCTAGTTCTTCGTTGCG
CTCAGCTTCAGTGATCTGAGCTTCATCCTCATCAATTGTGTGCTCATCATCTTCCTGCAGCATT
CACACATAAAAGTATGATTCATGTGAATAACGGTATCAAAAAAGACTATAAATATTCCATTCCA
ATACTTTTATGCAGTCTACTACAAATTGATTACAGTTAACAGTATGTCAAAAAATCTATCACCA
ACTTTTGCTGGTCTAAACAATAATTGATAAAGGAAAATATATTTACTGCCATGTAACAGTACAA
TATTAAGTATATACTATGGATAGTAACAGCCTCAAAGAAAAGGATCCTTCTCAAATTAACGAAG
AACATAATGCACCCTGATACATAGAATTCCTTACATTTACTTTCTGAGTGACAAAAGAAAAACT
AAACCAGGTAACTGAAATGGCTTACTGGCTCTTCGTCCAAGGAGCTCTCATAATCATCATCGAC
TTCCATATTATCTGCAAAGAAAAATTGTTTAAACTAAGAGAACAAAAATAAAATCTTGACACAT
GCAAAATATATCACTATGCTACAAACCAAAATCATCAGAAATGGTTGCATTTAAGTTCTTTTCT
GGTACTTCCTCTTGATGGGATCGTTGGTTTATCTGTGAAGTCCTGTTTTCTAGGTTTTCGGGAT
AGGGCATATCCACAAGATTTTCCGCCAACATTGTCGAATACCTGAAGAACAGAAGGTTAATATA
CAACTAGGAACAAAATTAAAGAGGCTACAGGTCAGATGAACCATAATGAGACTGACATACCTTT
CAGTCTGACCTAAAAGAAAATCAAGTTGCTTATCAAGTGCCTTCTTCTTTCTCTCCTCAAGCTC
CAGCTGGTGCTTATAAACAACCTGCTTTCTCTCAAATACAAAAACATAGCTCAGTTTTCTTCCA
AAAAGGAATGTCCTTAAGTAGTGTCACAGTTAACCATGACATTAGAAGTCAAAAATGAACTTGC
CAGCTTTTCTATTTTGATCCAGAACTTCTTCACATCCTTTGAAATATTAAGGGCAACTTTTCGC
ATTCTATGTTCTTTCTCCTGCAGAAGAAGAATCATCATATACTGGAATAATTCTCTTAATTCAT
TATTTACATAATTCGACTTTGGGTTTATTACTGGAGAACCATATCTTCATTCAAAGGCATTACA
GAAAATAATCGTAGCTAACATTCCATAGATAAGATATATGACAGAACAGTGTTTACAAGTCATC
TGATTAATCAGCCTAATCGGACCCTTGAAGTCAACTAGGGACACCGAGGCAATTAGCTTGACTA
GAAACCTGACTTGATTTCCAGTCATCTGACTAGGAGGGAGACGCCCCCTGGCTGGATGCTGTGA
CGGCTTGTCCTTTCACAGTCCTGCTCAACTGGGCTTAGTTGCTTAGAGGTGGGCTATGGACTGC
CAATTTGGCCTCTTACGGTTAACATAATTGTGCCCCAACTCAAGCAAAACGCAGAGGACGGAGT
CGTGCTTGAATTTTTTATCCCACACCACCGCAAGTCCTTTCGTGCATGATTCCTCTCTTCCCCC
GCGCTATTCTTCGTCTCCCGCGTGCCTATCCTCCTCTCTCATGATATTCCACGTTTCCCATGTG
TTGTTCCTCCTCTTGTAAAGCCATCAAGGCACCGCCACACTCTCAAGACATCACCCCTCTTCGT
GATGTACTCCTCAAATGGTGAGTATCTCCATCCTGAGGTGCTGTACAGCTGTTGCGTACATGTG
AAGATGTGGAACAGCGGCATGCAGTGGTGGAAGTGATCATGCATGACCTTGAATGTAGTCTTGA
TGCTTAGTTTATTGTGTATATATATAGTATGTATGTCCAGAATATATAAGACAACTAAGACTGA
CTAGTCTCGACTAATCAGTCTGGTCCACAACTAATCATGAGTAGTTTCCTTGTCAGTCAGATGG
CCGCTAGGTTCAATTATGTGATTTATAAACATTGTGACAGAAGAATCGAACCTTCTGTTTTCTC
TCGCCCTTTGTTGCTTGGTCAACTATGCTCTTATTTGCTCTTTGAGCAATCTTTTTGGCCATGG
ACAACTTCCATTTTCTCTCAGAATCAAACTCCTGCAGCATACACAATTTTAAGCTTGCAAAAAG
AAAAAATAATTACAAATTGACGATAAATTTAAGTGGGGGCTTTCCAATGAGAAGGATTGCAATA
AGCCGATTATAATATAATAATAAAGCAACCTTTGACAGCCACATCATCTCAGCAAGGACATGGT
CCCAGTGAACTTTTGGTCGTCGAGGCTCCCTTGGAGCTTCAAGAGCCTGCACCAATAAGATACA
GTTTAAGGTAACATAATCAGAACAAAACAGAAAATGTAGTGATTTTACTGACATTAAAGAAAAT
GTAGTTATTTTACTGACATTAAACAATATAAGAGAAAATGCACAAAGAATAACAAATTTCTGTT
ATGTTTCCTCTCTCAAACTACAGATCATGACAACATAAAAATGGCAGTGTGCAGGTACAATATG
TCAAGTAAACTGGCTCAGAGATGAAGAAAAATATACAGTGGATGGATTCATGCAACATCAAATC
TATGAGCTAACCTTCTGACGCCTAGCTCTTGTCTCATGGTCTAACTTTGACCGGGGACCTTTTG
ACGCCATCTTTCCAATCCTATATCATATCTTAGAGCATGAGCACCGAACTGGTA
Conservation Information
Conserved circRNAs NA
PMCS 0.02377009
Functional Information
Coding potential Y
Potential coding position 160699081-160696015(+)
160695947-160699075(-)
160699052-160699022(-)
Potential amino acid sequence MSTELVLVIDRRNISVTFTMILLHKLSIRMAIIHFLRRIAIFT*(+)
MVKVTEIFLLSMTSTSSVLML*(-)
MASKGPRSKLDHETRARRQKALEAPREPRRPKVHWDHVLAEMMWLSKEFDSERKWKLSMAKKIA
QRANKSIVDQATKGERKQKEKEHRMRKVALNISKDVKKFWIKIEKLVVYKHQLELEERKKKALD
KQLDFLLGQTERYSTMLAENLVDMPYPENLENRTSQINQRSHQEEVPEKNLNATISDDFDNMEV
DDDYESSLDEEPEDDEHTIDEDEAQITEAERNEELAALEAEADLPLDVILKMYTKTKVSREGSP
DSKDMLSNLGSKILIVDSLKQANGRDHEPAHSSSEDGNSSEEVDDGHSYAEFVKKNHGKSNGNI
SSINDQYQFGAHALRYDIGLERWRQKVPGQS*(-)
Sponge-miRNAs zma-miR394b-3p
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Han et al., 2020