Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d051507_circ_g.3 |
ID in PlantcircBase | zma_circ_008127 |
Alias | Zm04circ00062 |
Organism | Zea mays |
Position | chr4: 160695780-160699097 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d051507 |
Parent gene annotation |
Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 |
Parent gene strand | - |
Alternative splicing | Zm00001d051507_circ_g.1 Zm00001d051507_circ_g.2 |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | CT-GC |
Number of exons covered | Zm00001d051507_T044:6 Zm00001d051507_T066:11 Zm00001d051507_T026:11 Zm00001d051507_T007:11 Zm00001d051507_T072:11 Zm00001d051507_T062:6 Zm00001d051507_T075:11 Zm00001d051507_T041:11 Zm00001d051507_T008:10 Zm00001d051507_T058:2 Zm00001d051507_T049:5 Zm00001d051507_T085:3 Zm00001d051507_T006:10 Zm00001d051507_T028:11 Zm00001d051507_T038:4 Zm00001d051507_T084:10 Zm00001d051507_T073:11 Zm00001d051507_T019:10 Zm00001d051507_T009:11 Zm00001d051507_T082:10 Zm00001d051507_T023:10 Zm00001d051507_T015:8 Zm00001d051507_T018:11 Zm00001d051507_T024:11 Zm00001d051507_T005:11 Zm00001d051507_T054:7 Zm00001d051507_T030:11 Zm00001d051507_T012:3 Zm00001d051507_T014:7 Zm00001d051507_T051:11 Zm00001d051507_T037:3 Zm00001d051507_T070:8 Zm00001d051507_T003:11 Zm00001d051507_T022:10 Zm00001d051507_T021:2 Zm00001d051507_T035:10 Zm00001d051507_T039:11 Zm00001d051507_T031:11 Zm00001d051507_T069:8 Zm00001d051507_T076:11 Zm00001d051507_T017:10 Zm00001d051507_T013:4 Zm00001d051507_T043:10 Zm00001d051507_T052:11 Zm00001d051507_T016:10 Zm00001d051507_T074:11 Zm00001d051507_T001:11 Zm00001d051507_T034:9 Zm00001d051507_T053:11 Zm00001d051507_T083:11 Zm00001d051507_T064:7 Zm00001d051507_T061:4 Zm00001d051507_T071:5 Zm00001d051507_T033:11 Zm00001d051507_T047:11 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.02377009 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
160699081-160696015(+) 160695947-160699075(-) 160699052-160699022(-) |
Potential amino acid sequence |
MSTELVLVIDRRNISVTFTMILLHKLSIRMAIIHFLRRIAIFT*(+) MVKVTEIFLLSMTSTSSVLML*(-) MASKGPRSKLDHETRARRQKALEAPREPRRPKVHWDHVLAEMMWLSKEFDSERKWKLSMAKKIA QRANKSIVDQATKGERKQKEKEHRMRKVALNISKDVKKFWIKIEKLVVYKHQLELEERKKKALD KQLDFLLGQTERYSTMLAENLVDMPYPENLENRTSQINQRSHQEEVPEKNLNATISDDFDNMEV DDDYESSLDEEPEDDEHTIDEDEAQITEAERNEELAALEAEADLPLDVILKMYTKTKVSREGSP DSKDMLSNLGSKILIVDSLKQANGRDHEPAHSSSEDGNSSEEVDDGHSYAEFVKKNHGKSNGNI SSINDQYQFGAHALRYDIGLERWRQKVPGQS*(-) |
Sponge-miRNAs | zma-miR394b-3p |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Han et al., 2020 |