Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Zm00001d051507_circ_g.1 |
| ID in PlantcircBase | zma_circ_008125 |
| Alias | Zm04circ00060 |
| Organism | Zea mays |
| Position | chr4: 160687990-160693878 JBrowse» |
| Reference genome | AGPv4.38 |
| Type | ue-circRNA |
| Identification method | CIRI2 |
| Parent gene | Zm00001d051507 |
| Parent gene annotation |
Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 |
| Parent gene strand | - |
| Alternative splicing | Zm00001d051507_circ_g.2 Zm00001d051507_circ_g.3 |
| Support reads | NA |
| Tissues | leaf, endosperm |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Zm00001d051507_T031:7 Zm00001d051507_T016:7 Zm00001d051507_T044:8 Zm00001d051507_T005:7 Zm00001d051507_T074:7 Zm00001d051507_T008:7 Zm00001d051507_T075:7 Zm00001d051507_T020:5 Zm00001d051507_T014:7 Zm00001d051507_T033:7 Zm00001d051507_T037:7 Zm00001d051507_T007:7 Zm00001d051507_T003:7 Zm00001d051507_T053:7 Zm00001d051507_T012:8 Zm00001d051507_T019:7 Zm00001d051507_T024:7 Zm00001d051507_T021:8 Zm00001d051507_T030:7 Zm00001d051507_T072:7 Zm00001d051507_T011:4 Zm00001d051507_T073:7 Zm00001d051507_T028:7 Zm00001d051507_T069:7 Zm00001d051507_T006:7 Zm00001d051507_T052:8 Zm00001d051507_T082:6 Zm00001d051507_T034:7 Zm00001d051507_T054:7 Zm00001d051507_T035:7 Zm00001d051507_T038:7 Zm00001d051507_T071:7 Zm00001d051507_T058:7 Zm00001d051507_T061:8 Zm00001d051507_T010:4 Zm00001d051507_T009:7 Zm00001d051507_T076:7 Zm00001d051507_T039:7 Zm00001d051507_T083:4 Zm00001d051507_T066:7 Zm00001d051507_T064:7 Zm00001d051507_T043:7 Zm00001d051507_T018:7 Zm00001d051507_T001:7 Zm00001d051507_T062:7 Zm00001d051507_T051:7 Zm00001d051507_T070:7 Zm00001d051507_T022:7 Zm00001d051507_T023:7 Zm00001d051507_T041:7 Zm00001d051507_T047:7 Zm00001d051507_T015:7 Zm00001d051507_T026:7 Zm00001d051507_T013:7 Zm00001d051507_T084:4 Zm00001d051507_T017:7 Zm00001d051507_T049:7 Zm00001d051507_T057:7 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.263242389 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
160692396-160687992(-) 160688224-160693847(-) |
| Potential amino acid sequence |
MSLDDQSVSILEAKSDLFVDHQSRDVLETEDTAPRSEIASEPCAKQNFDEENNLTDVKTVNGDK SDDVKSDDVIADAAAAARSAQPTGNTFLTTKVRTKFPFLLKHSLREYQHIGLDWLVAMYEKRLN GILADEMGLGKTIMTISLLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSA KERKQKRQGWMKPNFFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFN SKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFCNPISGMVEGQDKVNKEIIDRLH NVLRPFILRRLKRDVEKQLPKKQEHVIYCRLSRRQRNLYEDFIASSETQATLASGNYFGMISII MQLRKVCNHPDLFEGRPIISSFDMAGINMQLSYSVCMLLDKSPFSQVGLSDMNLVFTQNEFSMS SWEADEVISAFPLSTTSWNHDLDTFCSNKDRQGSNLTNIFEDIQKALQEERIKESRERAASIAW WNRVRCQKRPVYGTNMIHVLTVKHHVSNILDKRNNPLCHMDYSSSLADLVLPSVERFQKMLDIV ESFTFAIPAARAPPPVCWYSKGNSPVFIDPAYREKCMNEFSPILSPIRSAIVRRQVYFPDRRLI QFDCGKLQELAILLRRLKSEGHRALIFTQMTKMLDVLEEFINLYGYTYLRLDGSTPPEERQTLM QRFNTNPKFFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRL ISESTIEENILKKANQKRALDDLVIQRGSYNTEFFKKLDPMEFFSGHTSLHAEDQEKNCSTTSG VSNDVDLALSIADVEAAIRQAEDEADYMALKKLEEEEAVDNQEFSEEAAGRQEEDELVNEENGK PDEHINEEQKYNSSDVEKEKHITLSTNRLNKEKALTLAVGDEDTDMLADVKQMAAAAAAAGQAS SSFENQLRPIDRYAMRFMELWDPVIDKAALNHQVNVEEEEWELDRIEKFKEDLEAEIDEDQEPL SYESWDVDFATTAYRQHVEALTQKQLLEEQERQAQEATKELEEKNDNMSSHHRKSKKNKKKTGK LKPLKRVRLSPESEVILEETSVDNAPSPELTSDESPHHYCNKRKKITVATEENSNSRSLKKLKK TTKSSFISEALSPRLKEDLNDSDSKSVGRTKSDGRFFIPCMPVKRVIVIKPERLKRKGIWSRDC ASDSWSSEEDAVLCGTVHEYGPLWELASDFLHFLPGGSLYRGRYHHPVHCCERYRELFCKHGMS ATDNSNSEKVPSGTGKAILRVSEEDKDYIATEEVKDDEATLSEEEELAKKEDPDYLEEVKLLQK ESEIPLEELLARYREDGCADHETAELKNSPHFVEEVNTDMSLDDQSVSILEAKSDLFVDHQSRD VLETEDTAPRSEIASEPCAKQNFDEENNLTDVKTVNGDKSDDVKSDDVIADAAAAARSAQPTGN TFLTTKVRTKFPFLLKHSLREYQHIGLDWLVAMYEKRLNGILADEMGLGKTIMTISLLAHLACE KGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKQKRQGWMKPNFFHVCITTYRL VIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHF LMPHVFQSHQEFKDWFCNPISGMVEGQDKVNKEIIDRLHNVLRPFILRRLKRDVEKQLPKKQEH VIYCRLSRRQRNLYEDFIASSETQATLASGNYFGMISIIMQLRKVCNHPDLFEGRPIISSFDMA GINMQLSYSVCMLLDKSPFSQVGLSDMNLVFTQNEFSMSSWEADEVISAFPLSTTSWNHDLDTF CSNKDRQGSNLTNIFEDIQKALQEERIKESRERAASIAWWNRVRCQKRPVYGTNMIHVLTVKHH VSNILDKRNNPLCHMDYSSSLADLVLPSVERFQKMLDIVESFTFAIPAARAPPPVCWYSKGNSP VFIDPAYREKCMNEFSPILSPIRSAIVRRQVYFPDRRLIQFDCGKLQELAILLRRLKSEGHRAL IFTQMTKMLDVLEEFINLYGYTYLRLDGSTPPEERQTLMQRFNTNPKFFLFILSTRSGGVGINL VGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVI QRGSYNTEFFKKLDPMEFFSGHTSLHAEDQEKNCSTTSGVSNDVDLALSIADVEAAIRQAEDEA DYMALKKLEEEEAVDNQEFSEEAAGRQEEDELVNEENGKPDEHINEEQKYNSSDVEKEKHITLS TNRLNKEKALTLAVGDEDTDMLADVKQMAAAAAAAGQASSSFENQLRPIDRYAMRFMELWDPVI DKAALNHQVNVEEEEWELDRIEKFKEDLEAEIDEDQEPLSYESWDVDFATTAYRQHVEALTQKQ LLEEQERQAQEATKELEEKNDNMSSHHRKSKKNKKKTGKLKPLKRVRLSPESEVILEETSVDNA PSPELTSDESPHHYCNKRKKITVATEENSNSRSLKKLKKTTKSSFISEALSPRLKEDLNDSDSK SVGRTKSDGRFFIPCMPVKRVIVIKPERLKRKGIWSRDCASDSWSSEEDAVLCGTVHEYGPLWE LASDFLHFLPGGSLYRGRYHHPVHCCERYRELFCKHGMSATDNSNSEKVPSGTGKAILRVSEED KDYIATEEVKDDEATLSEEEELAKKEDPDYLEEVKLLQKESEIPLEELLARYREDGCADHETAE LKNSPHFVEEVNTDMSLDDQSVSILEAKSDLFVDHQSRDVLETEDTAPRSEIASEPCAKQNFDE ENNLTDVKTVNGDKSDDVKSDDVIADAAAAARSAQPTGNTFLTTKVRTKFPFLLKHSLREYQHI GLDWLVAMYEKRLNGILADEMGLGKTIMTISLLAHLACEKGIWGPHLIVVPTSVMLNWETEFLK WCPAFKILTYFGSAKERKQKRQGWMKPNFFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIK NWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFCNPISGMVE GQDKVNKEIIDRLHNVLRPFILRRLKRDVEKQLPKKQEHVIYCRLSRRQRNLYEDFIASSETQA TLASGNYFGMISIIMQLRKVCNHPDLFEGRPIISSFDMAGINMQLSYSVCMLLDKSPFSQVGLS DMNLVFTQNEFSMSSWEADEVISAFPLSTTSWNHDLDTFCSNKDRQGSNLTNIFEDIQKALQEE RIKESRERAASIAWWNRVRCQKRPVYGTNMIHVLTVKHHVSNILDKRNNPLCHMDYSSSLADLV LPSVERFQKMLDIVESFTFAIPAARAPPPVCWYSKGNSPVFIDPAYREKCMNEFSPILSPIRSA IVRRQVYFPDRRLIQFDCGKLQELAILLRRLKSEGHRALIFTQMTKMLDVLEEFINLYGYTYLR LDGSTPPEERQTLMQRFNTNPKFFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRC HRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQRGSYNTEFFKKLDPMEFFSGHTSL HAEDQEKNCSTTSGVSNDVDLALSIADVEAAIRQAEDEADYMALKKLEEEEAVDNQEFSEEAAG RQEEDELVNEENGKPDEHINEEQKYNSSDVEKEKHITLSTNRLNKEKALTLAVGDEDTDMLADV KQMAAAAAAAGQASSSFENQLRPIDRYAMRFMELWDPVIDKAALNHQVNVEEEEWELDRIEKFK EDLEAEIDEDQEPLSYESWDVDFATTAYRQHVEALTQKQLLEEQERQAQEATKELEEKNDNMSS HHRKSKKNKKKTGKLKPLKRVRLSPESEVILEETSVDNAPSPELTSDESPHHYCNKRKKITVAT EENSNSRSLKKLKKTTKSSFISEALSPRLKEDLNDSDSKSVGRTKSDGRFFIPCMPVKRVIVIK PERLKRKGIWSRDCASDSWSSEEDAVLCGTVHEYGPLWELASDFLHFLPGGSLYRGRYHHPVHC CERYRELFCKHGMSATDNSNSEKVPSGTGKAILRVSEEDKDYIATEEVKDDEATLSEEEELAKK EDPDYLEEVKLLQKESEIPLEELLARYREDGCADHETAELKNSPHFVEEVNTDMSLDDQSVSIL EAKSDLFVDHQSRDVLETEDTAPRSEIASEPCAKQNFDEENNLTDVKTVNGDKSDDVKSDDVIA DAAAAARSAQPTGNTFLTTKVRTKFPFLLKHSLREYQHIGLDWLVAMYEKRLNGILADEMGLGK TIMTISLLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKQKRQGWM KPNFFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTP LQNDLMELWSLMHFLMPHVFQSHQEFKDWFCNPISGMVEGQDKVNKEIIDRLHNVLRPFILRRL KRDVEKQLPKKQEHVIYCRLSRRQRNLYEDFIASSETQATLASGNYFGMISIIMQLRKVCNHPD LFEGRPIISSFDMAGINMQLSYSVCMLLDKSPFSQVGLSDMNLVFTQNEFSMSSWEADEVISAF PLSTTSWNHDLDTFCSNKDRQGSNLTNIFEDIQKALQEERIKESRERAASIAWWNRVRCQKRPV YGTNMIHVLTVKHHVSNILDKRNNPLCHMDYSSSLADLVLPSVERFQKMLDIVESFTFAIPAAR APPPVCWYSKGNSPVFIDPAYREKCMNEFSPILSPIRSAIVRRQVYFPDRRLIQFDCGKLQELA ILLRRLKSEGHRALIFTQMTKMLDVLEEFINLYGYTYLRLDGSTPPEERQTLMQRFNTNPKFFL FILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENIL KKANQKRALDDLVIQRGSYNTEFFKKLDPMEFFSGHTSLHAEDQEKNCSTTSGVSNDVDLALSI ADVEAAIRQAEDEADYMALKKLEEEEAVDNQEFSEEAAGRQEEDELVNEENGKPDEHINEEQKY NSSDVEKEKHITLSTNRLNKEKALTLAVGDEDTDMLADVKQMAAAAAAAGQASSSFENQLRPID RYAMRFMELWDPVIDKAALNHQVNVEEEEWELDRIEKFKEDLEAEIDEDQEPLSYESWDVDFAT TAYRQHVEALTQKQLLEEQERQAQEATKELEEKNDNMSSHHRKSKKNKKKTGKLKPLKRVRLSP ESEVILEETSVDNAPSPELTSDESPHHYCNKRKKITVATEENSNSRSLKKLKKTTKSSFISEAL SPRLKEDLNDSDSKSVGRTKSDGRFFIPCMPVKRVIVIKPERLKRKGIWSRDCASDSWSSEEDA VLCGTVHEYGPLWELASDFLHFLPGGSLYRGRYHHPVHCCERYRELFCKHGMSATDNSNSEKVP SGTGKAILRVSE(-) MQFFVELFMSMVHFGNWQVIFFIFCQAVPCIGEDIIILCIAVRDTENCSANMECQQQIILTVKR FLLGLERLYLECLRRTKITLLLKK*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Han et al., 2020 |