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circRNA ID
AT1G01100_circ_g.2
Alias
ath_circ_000019, 1:50419-50963
Organism
Arabidpsis thaliana
Position
chr1: 50419-50963  JBrowse»
Reference genome
TAIR10.38
Type  
ue-circRNA
Identification method
find_circ; CIRI2
Parent gene
Parent gene annotation
60S acidic ribosomal protein P1-1
Parent gene strand
-
Alternative splicing
Splice junction sequence  
GGAGTCAAAGGAAAGATACCGTGATAGCGATACCCTCGTCCTCGAGGATCATAACAGCGTAGCT
GCAAGCAAGCTCTCCAACTGTCGACATTTTTTTATCcttcttcttctcctcagcagcaggagca
gctgccgcaccaccgccagcagctggagcagcagctgcaaccggagcaccacctccaccaccag
caccaacg
Support reads
2/1
Tissues
root;flower
Exon boundary  
Yes-Yes
Splicing signals  
CT-AC
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
CTTCTTCTTCTCCTCAGCAGCAGGAGCAGCTGCCGCACCACCGCCAGCAGCTGGAGCAGCAGCT
GCAACCGGAGCACCACCTCCACCACCAGCACCAACGTTCATGATGAGATCAGTCACGTTACGTT
TCTCAGCCATCTTGGCGAATAGCATTGGCCAGTATGACTCAATACTAACACCAGCAGCTTTCAC
CAAGGTCGCGATTTTGTCAGCCTATCAACGACATAAACAAACACAAGTAAAGATCTTTACCCAA
TTCAAAACACATTTAGACAGATACATAAAATACTTGTTCAATTCCTGACCAAATAATACTATAC
CAAATCCTTATCACTCCATAAGAATCATTTTCACTAAGTTTCTAACTATCAAGTCAAAAGAAAC
GGTTCCAAAACCCTACTGACTAAAGCAAAGAGACCAATCAAGATTTAGAAATAGACAAGCAGGA
GTCAAAGGAAAGATACCGTGATAGCGATACCCTCGTCCTCGAGGATCATAACAGCGTAGCTGCA
AGCAAGCTCTCCAACTGTCGACATTTTTTTATC
Number of exons covered
AT1G01100.1:2
AT1G01100.4:2
AT1G01100.2:2
AT1G01100.3:3
Conserved circRNAs
NA
Coding potential
NA
Potential coding position
NA
Potential amino acid sequence
NA
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Philips et al., 2020

Copyright©2017-2021 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

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