Detail information of Os10g0495000_circ_g.1


General Information
CircRNA Name Os10g0495000_circ_g.1
ID in PlantcircBase osa_circ_007293
Alias Os_ciR6813
Organism Oryza sativa
Position chr10: 18816836-18818371  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os10g0495000
Parent gene annotation K Homology, type 1, subgroup domain containing protein. (Os10t04
95000-01)
Parent gene strand +
Alternative splicing Os10g0495000_circ_ag.1 Os10g0495300_circ_g.1 Os10g0495300_circ_g.2 Os10g0495400_circ_ag.1 Os10g0495600_circ_g.1 Os10g0495600_circ_g.2 Os10g0495600_circ_g.3 Os10g0495600_circ_g.4 Os10g0495900_circ_g.1 Os10g0496900_circ_g.1 Os10g0496900_circ_g.2 Os10g0496900_circ_g.3 Os10g0496900_circ_g.4 Os10g0496900_circ_g.5 Os10g0496900_circ_g.6 Os10g0496900_circ_g.7 Os10g0496900_circ_g.8 Os10g0496900_circ_g.9 Os10g0497000_circ_ag.1 Os10g0497000_circ_ag.2 Os10g0497000_circ_g.1 Os10g0497000_circ_ag.2 Os10g0497000_circ_g.3 Os10g0497000_circ_ag.4 Os10g0497000_circ_g.5 Os10g0497000_circ_ag.6 Os10g0497000_circ_g.7 Os10g0497100_circ_ag.1 Os10g0497100_circ_ag.2 Os10g0497100_circ_igg.1
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os10t0495000-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGGTACACTACAATTAGGCCTCTCGAGAGCTGGGAATAGTAATGTGCAACAATTAGGAATCACC
AGAGCTGGAAATTCCAATGCTTATGATTATACCGAGatatctggatcttcttcccttgtaagaa
aagctctctatgaaatatctactcgtctgcatcaacatcctcgtaaagacaatccacctctgga
agaaatta
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1335
Transcript exons: 18816836-18817258,18817351-18817596,18817706-18818371
ATATCTGGATCTTCTTCCCTTGTAAGAAAAGCTCTCTATGAAATATCTACTCGTCTGCATCAAC
ATCCTCGTAAAGACAATCCACCTCTGGAAGAAATTATAGATGCAAGCACACAAAGGAAGCATCA
GGCTCCACCACAATTACCACATGCAAATCCAATGTTGCCACACCTGCATGTGGATCACTCACCA
CAAATACCCTTGCTTGATCCATATAGAAACAGGCCACTGCAGTATCATTCTGCTGAAGCTGAAG
AGTTCTCTATTAAAATTCTGTGTGCTTCTGAACACATTGGTCAAGTTATTGGGAAAAGTGGTGG
CAATGTTCGGCAAGTCGAACAGCAGACAGGTGCTTGCGTTCAGGTTAAAGAAGTTGGCAAAAAT
GCTTCTGAAGAAAGGTTAATTGTTGTTTCATCTCAGGAGATTCCAGATGATCCAGTGTCTCCAA
CAATTGAGGCGCTTATTTTGCTCCATAGTAAAGTAAGTACACTTGCTGAGAATCACCACTTGAC
GACACGGCTTGTTGTACCATCAAACAAAGTTGGTTGTATTATTGGGGAAGGTGGAAAGGTAATT
ACTGAAATGAGAAGACGGACTGGGGCTGAAATCCGAGTCTACTCAAAAGCAGATAAACCTAAGT
ACTTGTCTTTTGATGAGGAGCTTGTGCAGGTTGCTGGGCTTCCAGCTATTGCAAGAGGAGCCCT
GACAGAGATTGCTTCGAGGCTTAGAACTAGGACACTCAGAGATGGAAGTTCTTCCAATAATCCG
ACACCTTTTGCCCCTTTTGATGGTCCTCCTGTTGATATCTTGCCTAACAGGGAATTCATGCTAT
ATGGACGATCTGCCAATAGTCCCCCATATGGAGGGCCTCCTAATGATCCACCATATGGAAGACC
TGCCATTGATCCACCATATGGAAGACCTGCCATTGATCCACCATATGGAAGACCAGCCATTGAT
CCACCATATAGAAGACCTGCCAATGATACATCATATGGAGGGTTGAACAATGATGGGCCTCGTG
ATCCTTACACTGCGTATCCTGTAGAGTACTTCTCTAAAAGAGAGTACCCTAGTGGAAATAGCAA
AGTTACACCATCTGCTTCATACGACAGATATGCAGCAACTACTCGCTTGCCTAATAGAGAACTG
CCCTCATCTATTAGTCCTGGTGCCGATTATATGTCCCGCCGTTCTTATCTTGACCAAGTACCTA
CTGATAGGTACTCTAGTAGGGGTACACTACAATTAGGCCTCTCGAGAGCTGGGAATAGTAATGT
GCAACAATTAGGAATCACCAGAGCTGGAAATTCCAATGCTTATGATTATACCGAG

Genomic sequence ATATCTGGATCTTCTTCCCTTGTAAGAAAAGCTCTCTATGAAATATCTACTCGTCTGCATCAAC
ATCCTCGTAAAGACAATCCACCTCTGGAAGAAATTATAGATGCAAGCACACAAAGGAAGCATCA
GGCTCCACCACAATTACCACATGCAAATCCAATGTTGCCACACCTGCATGTGGATCACTCACCA
CAAATACCCTTGCTTGATCCATATAGAAACAGGCCACTGCAGTATCATTCTGCTGAAGCTGAAG
AGTTCTCTATTAAAATTCTGTGTGCTTCTGAACACATTGGTCAAGTTATTGGGAAAAGTGGTGG
CAATGTTCGGCAAGTCGAACAGCAGACAGGTGCTTGCGTTCAGGTTAAAGAAGTTGGCAAAAAT
GCTTCTGAAGAAAGGTTAATTGTTGTTTCATCTCAGGAGGTAATATGCAGATGATTATTCCAAT
TGGCATTGCCTTACCATTTTTATCATGAGTCTTTACAATATTATATCCTCCTACATTTTCTTTC
CAGATTCCAGATGATCCAGTGTCTCCAACAATTGAGGCGCTTATTTTGCTCCATAGTAAAGTAA
GTACACTTGCTGAGAATCACCACTTGACGACACGGCTTGTTGTACCATCAAACAAAGTTGGTTG
TATTATTGGGGAAGGTGGAAAGGTAATTACTGAAATGAGAAGACGGACTGGGGCTGAAATCCGA
GTCTACTCAAAAGCAGATAAACCTAAGTACTTGTCTTTTGATGAGGAGCTTGTGCAGGTAATTT
ATTTGGCCATACCTACACCAGAGATCCATATATTACCTTTATAACTACAGTTTTTACTTGTTAA
CATTTCATTGTGCTTTTACATTTGTTCCAAGCTTTCAGGTTGCTGGGCTTCCAGCTATTGCAAG
AGGAGCCCTGACAGAGATTGCTTCGAGGCTTAGAACTAGGACACTCAGAGATGGAAGTTCTTCC
AATAATCCGACACCTTTTGCCCCTTTTGATGGTCCTCCTGTTGATATCTTGCCTAACAGGGAAT
TCATGCTATATGGACGATCTGCCAATAGTCCCCCATATGGAGGGCCTCCTAATGATCCACCATA
TGGAAGACCTGCCATTGATCCACCATATGGAAGACCTGCCATTGATCCACCATATGGAAGACCA
GCCATTGATCCACCATATAGAAGACCTGCCAATGATACATCATATGGAGGGTTGAACAATGATG
GGCCTCGTGATCCTTACACTGCGTATCCTGTAGAGTACTTCTCTAAAAGAGAGTACCCTAGTGG
AAATAGCAAAGTTACACCATCTGCTTCATACGACAGATATGCAGCAACTACTCGCTTGCCTAAT
AGAGAACTGCCCTCATCTATTAGTCCTGGTGCCGATTATATGTCCCGCCGTTCTTATCTTGACC
AAGTACCTACTGATAGGTACTCTAGTAGGGGTACACTACAATTAGGCCTCTCGAGAGCTGGGAA
TAGTAATGTGCAACAATTAGGAATCACCAGAGCTGGAAATTCCAATGCTTATGATTATACCGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.43355064
Functional Information
Coding potential Y
Potential coding position 18816996-18818368(+)
18816963-18818326(-)
Potential amino acid sequence MLPHLHVDHSPQIPLLDPYRNRPLQYHSAEAEEFSIKILCASEHIGQVIGKSGGNVRQVEQQTG
ACVQVKEVGKNASEERLIVVSSQEIPDDPVSPTIEALILLHSKVSTLAENHHLTTRLVVPSNKV
GCIIGEGGKVITEMRRRTGAEIRVYSKADKPKYLSFDEELVQVAGLPAIARGALTEIASRLRTR
TLRDGSSSNNPTPFAPFDGPPVDILPNREFMLYGRSANSPPYGGPPNDPPYGRPAIDPPYGRPA
IDPPYGRPAIDPPYRRPANDTSYGGLNNDGPRDPYTAYPVEYFSKREYPSGNSKVTPSASYDRY
AATTRLPNRELPSSISPGADYMSRRSYLDQVPTDRYSSRGTLQLGLSRAGNSNVQQLGITRAGN
SNAYDYTEISGSSSLVRKALYEISTRLHQHPRKDNPPLEEIIDASTQRKHQAPPQLPHANPMLP
HLHVDHSPQIPLLDPYRNRPLQYHSAEAEEFSIKILCASEHIGQVIGKSGGNVRQVEQQTGACV
QVKEVGKNASEERLIVVSSQEIPDDPVSPTIEALILLHSKVSTLAENHHLTTRLVVPSNKVGCI
IGEGGKVITEMRRRTGAEIRVYSKADKPKYLSFDEELVQVAGLPAIARGALTEIASRLRTRTLR
DGSSSNNPTPFAPFDGPPVDILPNREFMLYGRSANSPPYGGPPNDPPYGRPAIDPPYGRPAIDP
PYGRPAIDPPYRRPANDTSYGGLNNDGPRDPYTAYPVEYFSKREYPSGNSKVTPSASYDRYAAT
TRLPNRELPSSISPGADYMSRRSYLDQVPTDRYSSRGTLQLGLSRAGNSNVQQLGITRAGNSNA
YDYTEISGSSSLVRKALYEISTRLHQHPRKDNPPLEEIIDASTQRKHQAPPQLPHANPMLPHLH
VDHSPQIPLLDPYRNRPLQYHSAEAEEFSIKILCASEHIGQVIGKSGGNVRQVEQQTGACVQVK
EVGKNASEERLIVVSSQEIPDDPVSPTIEALILLHSKVSTLAENHHLTTRLVVPSNKVGCIIGE
GGKVITEMRRRTGAEIRVYSKADKPKYLSFDEELVQVAGLPAIARGALTEIASRLRTRTLRDGS
SSNNPTPFAPFDGPPVDILPNREFMLYGRSANSPPYGGPPNDPPYGRPAIDPPYGRPAIDPPYG
RPAIDPPYRRPANDTSYGGLNNDGPRDPYTAYPVEYFSKREYPSGNSKVTPSASYDRYAATTRL
PNRELPSSISPGADYMSRRSYLDQVPTDRYSSRGTLQLGLSRAGNSNVQQLGITRAGNSNAYDY
TEISGSSSLVRKALYEISTRLHQHPRKDNPPLEEIIDASTQRKHQAPPQLPHANPMLPHLHVDH
SPQIPLLDPYRNRPLQYHSAEAEEFSIKILCASEHIGQVIGKSGGNVRQVEQQTGACVQVKEVG
KNASEERLIVVSSQEIPDDPVSPTIEALILLHSKVSTLAENHHLTTRLVVPSNKVGCIIGEGGK
VITEMRRRTGAEIRVYSKADKPKYLSFDEELVQVAGLPAIARGALTEIASRLRTRTLRDGSSSN
NPTPFAPFDGPPVDILPNREFMLYGRSANSPPYGGPPNDPPYGRPAIDPPYGRPAIDPPYGRPA
IDPPYRRPANDTSYGGLNNDGPRDPYTAYPVEYFSKREYPSGNSKVTPSASYDRYAATTRLPNR
ELPSSISPGADYMSRRSYLDQVPTDRYSSRGTLQLGLSRAGNSNVQQLGITRAGNSNAYDYTE(
+)
MLPLCACIYNFFQRWIVFTRMLMQTSRYFIESFSYKGRRSRYLGIIISIGISSSGDS*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015