Detail information of Os03g0197000_circ_g.3


General Information
CircRNA Name Os03g0197000_circ_g.3
ID in PlantcircBase osa_circ_018365
Alias Os_ciR9079
Organism Oryza sativa
Position chr3: 5086353-5089255  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method find_circ
Parent gene Os03g0197000
Parent gene annotation Di-trans-poly-cis-decaprenylcistransferase-like domain containin
g protein. (Os03t0197000-01)
Parent gene strand -
Alternative splicing Os03g0197000_circ_g.2 Os03g0197000_circ_g.4 Os03g0197000_circ_g.5 Os03g0197000_circ_g.6
Support reads 2
Tissues root
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered Os03t0197000-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTACAGGACGGCAAGAAGAAGAGCTAAATTCACCAGCATCCATACATGTGGAGGAGACTGATTC
ATGAATAGGGGAATCTCATTGGCCACAAATGCCGCCcaaaattttggtatttcttcgagaattt
atagaatgctttcacaatggcgccatatttcattgaattcagtggtcccatatgcctggatgag
acatggaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAAAATTTTGGTATTTCTTCGAGAATTTATAGAATGCTTTCACAATGGCGCCATATTTCATTGA
ATTCAGTGGTCCCATATGCCTGGATGAGACATGGAAGAGATATTTCAATGGTGGAAATAGTCAA
ATAGATAATGAGATCGAATTGCCGAGGTGCATGATTTCAGAATATGATTGAAGCATGCAGTCCT
TTTATGAAGATAAAGATACCTCTCCTAACATTTACATGCAAACCTGTTAGGACTGGTATATAAA
TATCTCTTTGGAGGATAATTAAATAGCTCAAAGTATAAAAGAACTATTACTTGGGAACAAGAAA
ATAGTGACTAGATTGGGTACTGAATGGTTATTTAATTACACCATACATGGGCTTACGCACCTAA
AAGCGAAATTGAGTCTGTTTGTTGTAATGCCATATGATCACGCTAAAATTTGAATAATCTTATT
CTATAATGATATTACTATAGGCATGAGCAGGAGTTATTCTGTGTATCATATTCTTTCTTTTTTA
CTCCCTCTGATTTAAAATGAAGAGTTCTCTACTCTTCTCTAAAAGTATGTTGTTATCTGACTTC
AAGGCATGTCCTCCATTTGTTCCTCCTATGCCTTTGCTCATTGAATGCTACAACTCCCATGTAT
GAGGTACCATTTCTAGTGTGTAATTACTACAGGGCAACAAGGTCACTTAACACTTTCTTAATTT
CTAAGCATAACTCTATAAGGACCTACATTTGGAATAAGAGGGACAAGAGTGGTGCGCATGTAGT
TTGAGTTCATTATCACAGGATCAATGCAAAATGTGAACAGAAAAACTAAAATGACCAAAAAAAA
ACACATACATTATCTCAGTATACCGCAATCTCCATGCAGGAAAACCTAAATGGCATCTAGCAGG
GCCATACACAAGAAGAAGATCAGGTTCTGGTCCACCACAACCTAATGAACGCAGCAGGAACAAT
TGGTCATATAGATTTATAATGATATAACTGATAAATGAGTATTATAAATTACAACATGCATTAA
AAATGGAAGGTTTTCCAAGCATACCTATTGCTTTCAATGCACCGGACATGTCAGCTTCTGTAAA
TACTATTTCACCATTTCCACAAGTATTCCTATTGCCGTTCACACAAGTTGAGCAAAGTAAGCTG
GCTGCTTTAGCAATCCCATCCTTGCCATCAGAACCAGAAATACACTCTATTGTCATCTCTTTAT
GACAACAGGTCAAAGCTTTTGTATTTGCACCCACATCCTACATGTTGTCATGGACATGAGGGAA
TATCGAGATCAATGTCATGGAATAAGAAAACAAAGCAACAAAAAGCTCGATTATGTGACTTACC
AGATATTTTCCTGAATTCCCATATCTTGAACCATTCATAGCAGGTGCAAATGTTTTCTTCAGCA
CTCCTATGGTGCAACATAAAGTGTTAATGTGCATCCCTTGTGCACTAGGTCACTAGACAGTGAC
ACAGTGTTGCTTAAATATCAGAAACTAAAGTGTAAAAGGATTAAAAGGAAACATGGCTATAATT
TGAATTATTCATCCACTGTTCTCCAAATAACAAAGACCACTGTTTCTCAAAGCCATTTAATTTC
TTATACTCATGTTCATTTTGATGAAAGGGAAAATGTTATATGTATGTACTAGGCCACTGGAGAT
ATTCTGCAAAGGAAACAATAGCATTCTACAAATGCAAATAGCAAACTCATTGTCTTACCATCAA
TGTCATAAAGACATACATACTTCACACCAACATTTGAGAGCCAACATAAGAGCTGATTGATCTT
TGCAACATTTTTAGCTTCTCTGCTATCTACCACAACAGCCAAGTGTTTGAGCCTATCCAGTTGG
AATTTCCGATACTTTGGAATCAGCCCGAATGAAATGAGATAGCATTCTATACTGTAGATCAGAT
CAAACCATAAACTGCAAAGGCTGATTGCTAAGTGGACGATGAACCAAAGCAACCCCAGAATCAG
CTTGATAATCACTGATGGTCGAGACATCTGCACATCGAGACAGAGGCACAACTTTCAATGTTCT
TTCTTCCCCAACAATAGACATATATTTCAGGAAACAGAGAAGTATATCCATTTGCAACAATTGG
CTTTGGAATCTAACCCTTAATGAGTTCAAATGATTTAATGGTAATAGCATCTGACAACTGGATT
GTTATACCATGCATATTGCTTATGTGTCACAACATTACTCTTGAGAATCTGATACTCAATTCAA
ACAATACATGAAAACTGAGAATGGATCAGCATGAAACAAAAAGGTTGACATTTACATTGTCCCC
AACAAGGCAATAACTTGAAGAACTTGAATCAATTTAAAATAGGGTTGCAATACCAGGAGATCTT
TCCAAGGAAAGCCAAGACAACAAATATGATAGCTTGACATAATTGAAATTTTTTTATTGGACTA
AGTCAGTATTGAACTTTCAGCTAGGATCATCAAAATAATGGACGAGGTCAACAAGAAAACTTTC
AGCTAAGGTCATGATATGTCAAAAGAGACAAATCACAGAAATCTTCTTTATCAAGCAATTGCAA
ATAGAAACAAATAGGAAACTACTCCAAAAGAAGTTAATGCATTGTCTCTGCTATACTTATCCCT
TCCACTCACCAGTACAGACTGTCACTGCAAAAAACCCGTCTGTAAGATTAAAAATAGTACGTTT
CTGCAGGACAATAGCAACCCAGCCTACCTACCCTTATTCACAGAAAGAATACACACGCAAGTTT
TTAGTCTATATTAATTCAATCTCATTCTATAAATAGGAGGGAAATAAGTCTCTACAGGACGGCA
AGAAGAAGAGCTAAATTCACCAGCATCCATACATGTGGAGGAGACTGATTCATGAATAGGGGAA
TCTCATTGGCCACAAATGCCGCC
Conservation Information
Conserved circRNAs NA
PMCS 0.223826361
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015