Detail information of Os03g0197000_circ_g.6


General Information
CircRNA Name Os03g0197000_circ_g.6
ID in PlantcircBase osa_circ_018368
Alias Os_ciR9080
Organism Oryza sativa
Position chr3: 5087401-5088363  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os03g0197000
Parent gene annotation Di-trans-poly-cis-decaprenylcistransferase-like domain containin
g protein. (Os03t0197000-01)
Parent gene strand -
Alternative splicing Os03g0197000_circ_g.2 Os03g0197000_circ_g.3 Os03g0197000_circ_g.4 Os03g0197000_circ_g.5
Support reads 2/1
Tissues root/root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0197000-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGATCAGATCAAACCATAAACTGCAAAGGCTGATTGCTAAGTGGACGATGAACCAAAGCAACCC
CAGAATCAGCTTGATAATCACTGATGGTCGAGACATctattgctttcaatgcaccggacatgtc
agcttctgtaaatactatttcaccatttccacaagtattcctattgccgttcacacaagttgag
caaagtaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 562
Transcript exons: 5087401-5087605,5087696-5087763,5088075-5088363
CTATTGCTTTCAATGCACCGGACATGTCAGCTTCTGTAAATACTATTTCACCATTTCCACAAGT
ATTCCTATTGCCGTTCACACAAGTTGAGCAAAGTAAGCTGGCTGCTTTAGCAATCCCATCCTTG
CCATCAGAACCAGAAATACACTCTATTGTCATCTCTTTATGACAACAGGTCAAAGCTTTTGTAT
TTGCACCCACATCCAGATATTTTCCTGAATTCCCATATCTTGAACCATTCATAGCAGGTGCAAA
TGTTTTCTTCAGCACTCCATCAATGTCATAAAGACATACATACTTCACACCAACATTTGAGAGC
CAACATAAGAGCTGATTGATCTTTGCAACATTTTTAGCTTCTCTGCTATCTACCACAACAGCCA
AGTGTTTGAGCCTATCCAGTTGGAATTTCCGATACTTTGGAATCAGCCCGAATGAAATGAGATA
GCATTCTATACTGTAGATCAGATCAAACCATAAACTGCAAAGGCTGATTGCTAAGTGGACGATG
AACCAAAGCAACCCCAGAATCAGCTTGATAATCACTGATGGTCGAGACAT

Genomic sequence CTATTGCTTTCAATGCACCGGACATGTCAGCTTCTGTAAATACTATTTCACCATTTCCACAAGT
ATTCCTATTGCCGTTCACACAAGTTGAGCAAAGTAAGCTGGCTGCTTTAGCAATCCCATCCTTG
CCATCAGAACCAGAAATACACTCTATTGTCATCTCTTTATGACAACAGGTCAAAGCTTTTGTAT
TTGCACCCACATCCTACATGTTGTCATGGACATGAGGGAATATCGAGATCAATGTCATGGAATA
AGAAAACAAAGCAACAAAAAGCTCGATTATGTGACTTACCAGATATTTTCCTGAATTCCCATAT
CTTGAACCATTCATAGCAGGTGCAAATGTTTTCTTCAGCACTCCTATGGTGCAACATAAAGTGT
TAATGTGCATCCCTTGTGCACTAGGTCACTAGACAGTGACACAGTGTTGCTTAAATATCAGAAA
CTAAAGTGTAAAAGGATTAAAAGGAAACATGGCTATAATTTGAATTATTCATCCACTGTTCTCC
AAATAACAAAGACCACTGTTTCTCAAAGCCATTTAATTTCTTATACTCATGTTCATTTTGATGA
AAGGGAAAATGTTATATGTATGTACTAGGCCACTGGAGATATTCTGCAAAGGAAACAATAGCAT
TCTACAAATGCAAATAGCAAACTCATTGTCTTACCATCAATGTCATAAAGACATACATACTTCA
CACCAACATTTGAGAGCCAACATAAGAGCTGATTGATCTTTGCAACATTTTTAGCTTCTCTGCT
ATCTACCACAACAGCCAAGTGTTTGAGCCTATCCAGTTGGAATTTCCGATACTTTGGAATCAGC
CCGAATGAAATGAGATAGCATTCTATACTGTAGATCAGATCAAACCATAAACTGCAAAGGCTGA
TTGCTAAGTGGACGATGAACCAAAGCAACCCCAGAATCAGCTTGATAATCACTGATGGTCGAGA
CAT
Conservation Information
Conserved circRNAs NA
PMCS 0.267054431
Functional Information
Coding potential Y
Potential coding position 5088352-5087567(+)
5088312-5087488(+)
5088365-5088274(-)
Potential amino acid sequence MVETSIAFNAPDMSASVNTISPFPQVFLLPFTQVEQSKLAALAIPSLPSEPEIHSIVISL*(+)
MNQSNPRISLIITDGRDIYCFQCTGHVSFCKYYFTISTSIPIAVHTS*(+)
MSRPSVIIKLILGLLWFIVHLAISLCSLWFDLIYSIECYLISFGLIPKYRKFQLDRLKHLAVVV
DSREAKNVAKINQLLCWLSNVGVKYVCLYDIDGVLKKTFAPAMNGSRYGNSGKYLDVGANTKAL
TCCHKEMTIECISGSDGKDGIAKAASLLCSTCVNGNRNTCGNGEIVFTEADMSGALKAIDVSTI
SDYQADSGVALVHRPLSNQPLQFMV*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017