Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os03g0197000_circ_g.6 |
ID in PlantcircBase | osa_circ_018368 |
Alias | Os_ciR9080 |
Organism | Oryza sativa |
Position | chr3: 5087401-5088363 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, find_circ |
Parent gene | Os03g0197000 |
Parent gene annotation |
Di-trans-poly-cis-decaprenylcistransferase-like domain containin g protein. (Os03t0197000-01) |
Parent gene strand | - |
Alternative splicing | Os03g0197000_circ_g.2 Os03g0197000_circ_g.3 Os03g0197000_circ_g.4 Os03g0197000_circ_g.5 |
Support reads | 2/1 |
Tissues | root/root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os03t0197000-01:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.267054431 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
5088352-5087567(+) 5088312-5087488(+) 5088365-5088274(-) |
Potential amino acid sequence |
MVETSIAFNAPDMSASVNTISPFPQVFLLPFTQVEQSKLAALAIPSLPSEPEIHSIVISL*(+) MNQSNPRISLIITDGRDIYCFQCTGHVSFCKYYFTISTSIPIAVHTS*(+) MSRPSVIIKLILGLLWFIVHLAISLCSLWFDLIYSIECYLISFGLIPKYRKFQLDRLKHLAVVV DSREAKNVAKINQLLCWLSNVGVKYVCLYDIDGVLKKTFAPAMNGSRYGNSGKYLDVGANTKAL TCCHKEMTIECISGSDGKDGIAKAASLLCSTCVNGNRNTCGNGEIVFTEADMSGALKAIDVSTI SDYQADSGVALVHRPLSNQPLQFMV*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015;Chu et al., 2017 |