Detail information of AT2G31040_circ_g.1


General Information
CircRNA Name AT2G31040_circ_g.1
ID in PlantcircBase ath_circ_015802
Alias NA
Organism Arabidpsis thaliana
Position chr2: 13209533-13209625  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT2G31040
Parent gene annotation ATP synthase protein I-like protein
Parent gene strand -
Alternative splicing AT2G31040_circ_g.2 AT2G31040_circ_g.3 AT2G31040_circ_g.4 AT2G31040_circ_g.5 AT2G31040_circ_g.6 AT2G31040_circ_g.7 AT2G31040_circ_g.8 AT2G31040_circ_g.9
Support reads 3
Tissues aerial
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G31040.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGCATCCTCATATATGCAAGTGAACCCAACAAGCCAGCACCAAAAttggcaactcctctggct
ccatctgccatggcatctacagagttacc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTGGCAACTCCTCTGGCTCCATCTGCCATGGCATCTACAGAGTTACCAAGCATCCTCATATATG
CAAGTGAACCCAACAAGCCAGCACCAAAA
Conservation Information
Conserved circRNAs NA
PMCS 0.192655917
Functional Information
Coding potential Y
Potential coding position 13209592-13209535(-)
13209560-13209622(+)
13209594-13209622(+)
Potential amino acid sequence MRMLGNSVDAMADGARGVANFGAGLLGSLAYMRMLGNSVDAMADGARGVANFGAGLLGSLAYMR
MLGNSVDAMADGARGVANFGAGLLGSLAYMRMLGNSVDAMADGARGVA(-)
MASTELPSILIYASEPNKPAPKLATPLAPSAMASTELPSILIYASEPNKPAPKLATPLAPSAMA
STELPSILIYASEPNKPAPKLATPLAPSAMASTELPSILIYASEPNKPAPK(+)
MQVNPTSQHQNWQLLWLHLPWHLQSYQASSYMQVNPTSQHQNWQLLWLHLPWHLQSYQASSYMQ
VNPTSQHQNWQLLWLHLPWHLQSYQASSYMQVNPTSQHQ(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017