Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT2G31040_circ_g.1 |
ID in PlantcircBase | ath_circ_015802 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr2: 13209533-13209625 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | PcircRNA_finder |
Parent gene | AT2G31040 |
Parent gene annotation |
ATP synthase protein I-like protein |
Parent gene strand | - |
Alternative splicing | AT2G31040_circ_g.2 AT2G31040_circ_g.3 AT2G31040_circ_g.4 AT2G31040_circ_g.5 AT2G31040_circ_g.6 AT2G31040_circ_g.7 AT2G31040_circ_g.8 AT2G31040_circ_g.9 |
Support reads | 3 |
Tissues | aerial |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT2G31040.1:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.192655917 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
13209592-13209535(-) 13209560-13209622(+) 13209594-13209622(+) |
Potential amino acid sequence |
MRMLGNSVDAMADGARGVANFGAGLLGSLAYMRMLGNSVDAMADGARGVANFGAGLLGSLAYMR MLGNSVDAMADGARGVANFGAGLLGSLAYMRMLGNSVDAMADGARGVA(-) MASTELPSILIYASEPNKPAPKLATPLAPSAMASTELPSILIYASEPNKPAPKLATPLAPSAMA STELPSILIYASEPNKPAPKLATPLAPSAMASTELPSILIYASEPNKPAPK(+) MQVNPTSQHQNWQLLWLHLPWHLQSYQASSYMQVNPTSQHQNWQLLWLHLPWHLQSYQASSYMQ VNPTSQHQNWQLLWLHLPWHLQSYQASSYMQVNPTSQHQ(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |