Detail information of Os06g0270900_circ_g.7


General Information
CircRNA Name Os06g0270900_circ_g.7
ID in PlantcircBase osa_circ_030519
Alias NA
Organism Oryza sativa
Position chr6: 9094789-9095193  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os06g0270900
Parent gene annotation Similar to RF2 (EC 1.2.1.3) (T cytoplasm male sterility restorer
factor 2). (Os06t0270900-01);Similar to Aldehyde dehydrogenase.
(Os06t0270900-02)
Parent gene strand +
Alternative splicing Os06g0270900_circ_g.3 Os06g0270900_circ_g.4 Os06g0270900_circ_g.5 Os06g0270900_circ_g.6 Os06g0270900_circ_g.8
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os06t0270900-01:2
Os06t0270900-02:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGAGCGTATCTATGATGAGTTCGTGGAGAAGGCCAAGGCTCGTGCTCTCAAGCGTGTGGTTGGT
GATCCATTCAAGAATGGTGTTGAACAGGGCCCTCAGattgcattcactggatcgaccgatactg
gaaaagtcgtccttgagttggctgcaaggagcaaccttaagtcagtgacactggagctaggagg
caagtctc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTGCATTCACTGGATCGACCGATACTGGAAAAGTCGTCCTTGAGTTGGCTGCAAGGAGCAACC
TTAAGTCAGTGACACTGGAGCTAGGAGGCAAGTCTCCTTTCATCATCATGGATGATGCTGATGT
TGACCATGCTGTTGAGCTTGCGCATTTTGCACTGTTCTTTAACCAGGTACCACATGATAAATTA
TGTCAAAGCAGGCACAACAACTTTGTTCATTAGTTTGAAATCTCTAAATGATTTTTCTTGACTT
AAAATTTCAAGGGACAATGTTGCTGTGCTGGGTCTCGTACATTTGTGCATGAGCGTATCTATGA
TGAGTTCGTGGAGAAGGCCAAGGCTCGTGCTCTCAAGCGTGTGGTTGGTGATCCATTCAAGAAT
GGTGTTGAACAGGGCCCTCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.308062058
Functional Information
Coding potential Y
Potential coding position 9094901-9095190(+)
9094905-9094861(+)
9094903-9095192(-)
Potential amino acid sequence MDDADVDHAVELAHFALFFNQGQCCCAGSRTFVHERIYDEFVEKAKARALKRVVGDPFKNGVEQ
GPQIAFTGSTDTGKVVLELAARSNLKSVTLELGGKSPFIIMDDADVDHAVELAHFALFFNQGQC
CCAGSRTFVHERIYDEFVEKAKARALKRVVGDPFKNGVEQGPQIAFTGSTDTGKVVLELAARSN
LKSVTLELGGKSPFIIMDDADVDHAVELAHFALFFNQGQCCCAGSRTFVHERIYDEFVEKAKAR
ALKRVVGDPFKNGVEQGPQIAFTGSTDTGKVVLELAARSNLKSVTLELGGKSPFIIMDDADVDH
AVELAHFALFFNQGQCCCAGSRTFVHERIYDEFVEKAKARALKRVVGDPFKNGVEQGPQ(+)
MMLMLTMLLSLRILHCSLTRDNVAVLGLVHLCMSVSMMSSWRRPRLVLSSVWLVIHSRMVLNRA
LRLHSLDRPILEKSSLSWLQGATLSQ*(+)
MMMKGDLPPSSSVTDLRLLLAANSRTTFPVSVDPVNAI*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017