Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Os06g0270900_circ_g.7 |
ID in PlantcircBase | osa_circ_030519 |
Alias | NA |
Organism | Oryza sativa |
Position | chr6: 9094789-9095193 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os06g0270900 |
Parent gene annotation |
Similar to RF2 (EC 1.2.1.3) (T cytoplasm male sterility restorer factor 2). (Os06t0270900-01);Similar to Aldehyde dehydrogenase. (Os06t0270900-02) |
Parent gene strand | + |
Alternative splicing | Os06g0270900_circ_g.3 Os06g0270900_circ_g.4 Os06g0270900_circ_g.5 Os06g0270900_circ_g.6 Os06g0270900_circ_g.8 |
Support reads | 1 |
Tissues | shoot |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os06t0270900-01:2 Os06t0270900-02:2 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.308062058 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
9094901-9095190(+) 9094905-9094861(+) 9094903-9095192(-) |
Potential amino acid sequence |
MDDADVDHAVELAHFALFFNQGQCCCAGSRTFVHERIYDEFVEKAKARALKRVVGDPFKNGVEQ GPQIAFTGSTDTGKVVLELAARSNLKSVTLELGGKSPFIIMDDADVDHAVELAHFALFFNQGQC CCAGSRTFVHERIYDEFVEKAKARALKRVVGDPFKNGVEQGPQIAFTGSTDTGKVVLELAARSN LKSVTLELGGKSPFIIMDDADVDHAVELAHFALFFNQGQCCCAGSRTFVHERIYDEFVEKAKAR ALKRVVGDPFKNGVEQGPQIAFTGSTDTGKVVLELAARSNLKSVTLELGGKSPFIIMDDADVDH AVELAHFALFFNQGQCCCAGSRTFVHERIYDEFVEKAKARALKRVVGDPFKNGVEQGPQ(+) MMLMLTMLLSLRILHCSLTRDNVAVLGLVHLCMSVSMMSSWRRPRLVLSSVWLVIHSRMVLNRA LRLHSLDRPILEKSSLSWLQGATLSQ*(+) MMMKGDLPPSSSVTDLRLLLAANSRTTFPVSVDPVNAI*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Chu et al., 2017 |