Detail information of Os06g0270900_circ_g.4


General Information
CircRNA Name Os06g0270900_circ_g.4
ID in PlantcircBase osa_circ_030517
Alias NA
Organism Oryza sativa
Position chr6: 9092953-9094654  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os06g0270900
Parent gene annotation Similar to RF2 (EC 1.2.1.3) (T cytoplasm male sterility restorer
factor 2). (Os06t0270900-01);Similar to Aldehyde dehydrogenase.
(Os06t0270900-02)
Parent gene strand +
Alternative splicing Os06g0270900_circ_g.3 Os06g0270900_circ_g.5 Os06g0270900_circ_g.6 Os06g0270900_circ_g.7 Os06g0270900_circ_g.8
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os06t0270900-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATTAAATAGGCTGGACTCCCAGACGGTGTTGTTAACGTGGTATCTGGTTTTGGACCTACTGCT
GGTGCTGCTCTTGCTAGTCACATGGATGTCGATAAGatgggacacaaggattgttgccgggaat
ccttcagaggttcagcactgcagcagtagcagaggagcccatatcacccccagtccaagtgaac
tacactca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATGGGACACAAGGATTGTTGCCGGGAATCCTTCAGAGGTTCAGCACTGCAGCAGTAGCAGAGGA
GCCCATATCACCCCCAGTCCAAGTGAACTACACTCAGCTCCTCATTGATGGAAAATTCGTTGAT
TCAGCATCTGGTACACTTCTTCAGCTCAGCCCTTCCTATGAAACTATTTCAACTCAACTAGTAG
TAATGAGATTGGATTCATAAGGCTAGTTTGGTGGGCTTCAGCTGTTCTATAGGCATTGAACACC
ACAAGGCCCATGAACTGAGAAAAATAGATTGGTTTTAAATTTCTTTTTGTGACAGTAAGTTGAG
CTCATAATTCAAATTGTGCATTGCAATTTCATTAGGCAAAACTTTCCCAACTCTGGACCCTCGT
ACCGGGGAGCTGATTGCCCATGTGGCTGAAGGCGATGCGGAGGATATTAACCGTGCGGTTCATG
CGGCCCGCAAGGCTTTCGATGAAGGGCCATGGCCAAAGATGACTGCCTATGTAAACACTTACTG
ACACTTCTGTTGCTAGCTGCTACTGTTGTATTGTTCTGAAGTCATGCTCATAGAAGTACACAAT
TTATTTTCTTCTACAGGAGAGATCCCGGATTCTGTTGCGGTTTGCTGACTTGATTGAGAAGCAC
AACGATGAAATTGCTGCATTGGAGACATGGGACAACGGCAAGCCGTATGCGCAAGCTGCCAACA
TTGAAGTGCCAATGGTGGCACGGCTGATGCGGTACTATGCTGGTGAGTAAGCTTCCTTCTGACA
TCAACAGCAATGATCAACAAGGTGCCTATGCAGGTGGCTAATATTGTTCCACTCGTGCTGAAAT
GTTTGCAGGTTGGGCTGACAAGATCCATGGGCTTGTCGTGCCGGCTGACGGCCCACACCATGTA
CAGGTGCTGCACGAGCCCATTGGTGTCGCAGGTCAGATCATCCCATGGAACTTTCCGCTTCTGA
TGTTTGCGTGGAAAGTTGGCCCTGCTTTGGCTTGTGGAAACACTGTTGTGCTCAAGACGGCTGA
GCAAACTCCTCTGTCTGCTCTATTTGCTTCTAAGCTGTTGCATGAGGTTGGTGCAGTGATCATT
TTCGTAATTTTTGTTCAATGAGAGGAATCCATTTTTAATTGCTCCATGCTATTTGGACATTTAT
TATGATTACTGAGAATGGCCTGTTGTTGGCTTGTGTAGTTTTGGGATTGCAAAATATTATAATT
AGTTCTAAAGCAACCATTTTGCAAAATATGGTTACTGAGAATTGCATTTTACAGAATTTCTTGT
CCTGCAGTCTAGTGATCAAGAAGCAACTGCAAGTTCAGATCTTCCCGAAAGGAAGGGATAGAAA
CAACCCATTCTAGTGTCAATAATCCTTTTAGGTCTAATATCCAAGACCTAGAGTGAAATGATTC
AAATTTCATTGCATGATCTGTTTGTTTAGTTCTTTGTCAATGCAGCCATCAATTCTGGCTTGCT
TCAGTGCAAAGAAAGAGTGCATTTTTGACTAAGTCTGACCAGCTGAAGCATTCTTTATATTTTC
TAGTCTACAGTGAACAATGTTCTATATCAGCTACACATTATTGAATCAGAATTGATCATCTTAA
ATGATTAAATAGGCTGGACTCCCAGACGGTGTTGTTAACGTGGTATCTGGTTTTGGACCTACTG
CTGGTGCTGCTCTTGCTAGTCACATGGATGTCGATAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.181665957
Functional Information
Coding potential Y
Potential coding position 9094019-9093061(+)
9093440-9093006(+)
Potential amino acid sequence MRLDSQTVLLTWYLVLDLLLVLLLLVTWMSIRWDTRIVAGNPSEVQHCSSSRGAHITPSPSELH
SAPH*(+)
MTAYERSRILLRFADLIEKHNDEIAALETWDNGKPYAQAANIEVPMVARLMRYYAGWADKIHGL
VVPADGPHHVQVLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTVVLKTAEQTPLSALFASK
LLHEAGLPDGVVNVVSGFGPTAGAALASHMDVDKMGHKDCCRESFRGSALQQ*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017