Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G24300_circ_g.3 |
ID in PlantcircBase | ath_circ_004163 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 8617617-8618327 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | PcircRNA_finder, circRNA_finder |
Parent gene | AT1G24300 |
Parent gene annotation |
GYF domain-containing protein |
Parent gene strand | - |
Alternative splicing | AT1G24300_circ_g.2 AT1G24300_circ_g.4 |
Support reads | 19 |
Tissues | aerial, whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G24300.2:1 AT1G24300.1:1 AT1G24300.3:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.327357004 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
8618125-8617619(-) |
Potential amino acid sequence |
MGKLQQPDVEVDQSEAAMPPEDFLFLYIDPQGVIQGPFIGSDIISWFEQGFFGTDLQVRLANAP EGTPFQDLGRVMSYLKTESAHAHISNQESELEETRLKANSDTGLSIAPVAESNDSSSMNGTSRS FSVYNNPSAQDNFQRKSESEFYATPPHTEDRSFLDFSTQDEGLLGSHNGGLGAASSVPRLNSVA SESYGSFGAGYQVSHGSPEAVRSVFTKSPVLDGSESVVGSFEQDYMGKLQQPDVEVDQSEAAMP PEDFLFLYIDPQGVIQGPFIGSDIISWFEQGFFGTDLQVRLANAPEGTPFQDLGRVMSYLKTES AHAHISNQESELEETRLKANSDTGLSIAPVAESNDSSSMNGTSRSFSVYNNPSAQDNFQRKSES EFYATPPHTEDRSFLDFSTQDEGLLGSHNGGLGAASSVPRLNSVASESYGSFGAGYQVSHGSPE AVRSVFTKSPVLDGSESVVGSFEQDYMGKLQQPDVEVDQSEAAMPPEDFLFLYIDPQGVIQGPF IGSDIISWFEQGFFGTDLQVRLANAPEGTPFQDLGRVMSYLKTESAHAHISNQESELEETRLKA NSDTGLSIAPVAESNDSSSMNGTSRSFSVYNNPSAQDNFQRKSESEFYATPPHTEDRSFLDFST QDEGLLGSHNGGLGAASSVPRLNSVASESYGSFGAGYQVSHGSPEAVRSVFTKSPVLDGSESVV GSFEQDYMGKLQQPDVEVDQSEAAMPPEDFLFLYIDPQGVIQGPFIGSDIISWFEQGFFGTDLQ VRLANAPEGTPFQDLGRVMSYLKTESAHAHISNQESELEETRLKANSDTGLSIAPVAESNDSSS MNGTSRSFSVYNNPSAQDNFQRKSESEFYATPPHTEDRSFLDFSTQDE(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |